===> Building for py311-macs2-2.2.9.1nb1 * Building wheel... /opt/pkg/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /opt/pkg/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: BSD License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running bdist_wheel running build running build_py creating build/lib.macosx-12.3-arm64-cpython-311/MACS2 copying MACS2/Constants.py -> build/lib.macosx-12.3-arm64-cpython-311/MACS2 copying MACS2/OptValidator.py -> build/lib.macosx-12.3-arm64-cpython-311/MACS2 copying MACS2/OutputWriter.py -> build/lib.macosx-12.3-arm64-cpython-311/MACS2 copying MACS2/__init__.py -> build/lib.macosx-12.3-arm64-cpython-311/MACS2 copying MACS2/bdgbroadcall_cmd.py -> build/lib.macosx-12.3-arm64-cpython-311/MACS2 copying MACS2/bdgcmp_cmd.py -> build/lib.macosx-12.3-arm64-cpython-311/MACS2 copying MACS2/bdgdiff_cmd.py -> build/lib.macosx-12.3-arm64-cpython-311/MACS2 copying MACS2/bdgopt_cmd.py -> build/lib.macosx-12.3-arm64-cpython-311/MACS2 copying MACS2/bdgpeakcall_cmd.py -> build/lib.macosx-12.3-arm64-cpython-311/MACS2 copying MACS2/callpeak_cmd.py -> build/lib.macosx-12.3-arm64-cpython-311/MACS2 copying MACS2/cmbreps_cmd.py -> build/lib.macosx-12.3-arm64-cpython-311/MACS2 copying MACS2/diffpeak_cmd.py -> build/lib.macosx-12.3-arm64-cpython-311/MACS2 copying MACS2/filterdup_cmd.py -> build/lib.macosx-12.3-arm64-cpython-311/MACS2 copying MACS2/pileup_cmd.py -> build/lib.macosx-12.3-arm64-cpython-311/MACS2 copying MACS2/predictd_cmd.py -> build/lib.macosx-12.3-arm64-cpython-311/MACS2 copying MACS2/randsample_cmd.py -> build/lib.macosx-12.3-arm64-cpython-311/MACS2 copying MACS2/refinepeak_cmd.py -> build/lib.macosx-12.3-arm64-cpython-311/MACS2 creating build/lib.macosx-12.3-arm64-cpython-311/MACS2/IO copying MACS2/IO/__init__.py -> build/lib.macosx-12.3-arm64-cpython-311/MACS2/IO copying MACS2/cPosValCalculation.pxd -> build/lib.macosx-12.3-arm64-cpython-311/MACS2 copying MACS2/khash.pxd -> build/lib.macosx-12.3-arm64-cpython-311/MACS2 running build_ext building 'MACS2.Prob' extension creating build/temp.macosx-12.3-arm64-cpython-311/MACS2 clang -pipe -Os -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/lib/python3.11/site-packages/numpy/_core/include -I/opt/pkg/include/python3.11 -c MACS2/Prob.c -o build/temp.macosx-12.3-arm64-cpython-311/MACS2/Prob.o -w -O3 -ffast-math -g0 In file included from MACS2/Prob.c:1258: In file included from /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/arrayobject.h:5: In file included from /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12: In file included from /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1913: /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. clang -bundle -undefined dynamic_lookup -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -pipe -Os -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -I/opt/pkg/include build/temp.macosx-12.3-arm64-cpython-311/MACS2/Prob.o -L/opt/pkg/lib -lm -o build/lib.macosx-12.3-arm64-cpython-311/MACS2/Prob.so building 'MACS2.IO.Parser' extension creating build/temp.macosx-12.3-arm64-cpython-311/MACS2/IO clang -pipe -Os -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/lib/python3.11/site-packages/numpy/_core/include -I/opt/pkg/include/python3.11 -c MACS2/IO/Parser.c -o build/temp.macosx-12.3-arm64-cpython-311/MACS2/IO/Parser.o -w -O3 -ffast-math -g0 In file included from MACS2/IO/Parser.c:1259: In file included from /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/arrayobject.h:5: In file included from /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12: In file included from /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1913: /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. clang -bundle -undefined dynamic_lookup -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -pipe -Os -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -I/opt/pkg/include build/temp.macosx-12.3-arm64-cpython-311/MACS2/IO/Parser.o -L/opt/pkg/lib -o build/lib.macosx-12.3-arm64-cpython-311/MACS2/IO/Parser.so building 'MACS2.Pileup' extension clang -pipe -Os -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -I/opt/pkg/include -IMACS2 -I/opt/pkg/lib/python3.11/site-packages/numpy/_core/include -I/opt/pkg/include/python3.11 -c MACS2/Pileup.c -o build/temp.macosx-12.3-arm64-cpython-311/MACS2/Pileup.o -w -O3 -ffast-math -g0 In file included from MACS2/Pileup.c:1263: In file included from /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/arrayobject.h:5: In file included from /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12: In file included from /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1913: /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. clang -pipe -Os -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -I/opt/pkg/include -IMACS2 -I/opt/pkg/lib/python3.11/site-packages/numpy/_core/include -I/opt/pkg/include/python3.11 -c MACS2/cPosValCalculation.c -o build/temp.macosx-12.3-arm64-cpython-311/MACS2/cPosValCalculation.o -w -O3 -ffast-math -g0 clang -bundle -undefined dynamic_lookup -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -pipe -Os -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -I/opt/pkg/include build/temp.macosx-12.3-arm64-cpython-311/MACS2/Pileup.o build/temp.macosx-12.3-arm64-cpython-311/MACS2/cPosValCalculation.o -L/opt/pkg/lib -o build/lib.macosx-12.3-arm64-cpython-311/MACS2/Pileup.so building 'MACS2.PeakModel' extension clang -pipe -Os -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/lib/python3.11/site-packages/numpy/_core/include -I/opt/pkg/include/python3.11 -c MACS2/PeakModel.c -o build/temp.macosx-12.3-arm64-cpython-311/MACS2/PeakModel.o -w -O3 -ffast-math -g0 In file included from MACS2/PeakModel.c:1257: In file included from /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/arrayobject.h:5: In file included from /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12: In file included from /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1913: /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. clang -bundle -undefined dynamic_lookup -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -pipe -Os -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -I/opt/pkg/include build/temp.macosx-12.3-arm64-cpython-311/MACS2/PeakModel.o -L/opt/pkg/lib -o build/lib.macosx-12.3-arm64-cpython-311/MACS2/PeakModel.so building 'MACS2.PeakDetect' extension clang -pipe -Os -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -c MACS2/PeakDetect.c -o build/temp.macosx-12.3-arm64-cpython-311/MACS2/PeakDetect.o -w -O3 -ffast-math -g0 clang -bundle -undefined dynamic_lookup -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -pipe -Os -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -I/opt/pkg/include build/temp.macosx-12.3-arm64-cpython-311/MACS2/PeakDetect.o -L/opt/pkg/lib -o build/lib.macosx-12.3-arm64-cpython-311/MACS2/PeakDetect.so building 'MACS2.Signal' extension clang -pipe -Os -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/lib/python3.11/site-packages/numpy/_core/include -I/opt/pkg/include/python3.11 -c MACS2/Signal.c -o build/temp.macosx-12.3-arm64-cpython-311/MACS2/Signal.o -w -O3 -ffast-math -g0 In file included from MACS2/Signal.c:1257: In file included from /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/arrayobject.h:5: In file included from /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12: In file included from /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1913: /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. clang -bundle -undefined dynamic_lookup -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -pipe -Os -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -I/opt/pkg/include build/temp.macosx-12.3-arm64-cpython-311/MACS2/Signal.o -L/opt/pkg/lib -o build/lib.macosx-12.3-arm64-cpython-311/MACS2/Signal.so building 'MACS2.IO.PeakIO' extension clang -pipe -Os -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -c MACS2/IO/PeakIO.c -o build/temp.macosx-12.3-arm64-cpython-311/MACS2/IO/PeakIO.o -w -O3 -ffast-math -g0 clang -bundle -undefined dynamic_lookup -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -pipe -Os -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -I/opt/pkg/include build/temp.macosx-12.3-arm64-cpython-311/MACS2/IO/PeakIO.o -L/opt/pkg/lib -o build/lib.macosx-12.3-arm64-cpython-311/MACS2/IO/PeakIO.so building 'MACS2.IO.BedGraphIO' extension clang -pipe -Os -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -c MACS2/IO/BedGraphIO.c -o build/temp.macosx-12.3-arm64-cpython-311/MACS2/IO/BedGraphIO.o -w -O3 -ffast-math -g0 clang -bundle -undefined dynamic_lookup -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -pipe -Os -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -I/opt/pkg/include build/temp.macosx-12.3-arm64-cpython-311/MACS2/IO/BedGraphIO.o -L/opt/pkg/lib -o build/lib.macosx-12.3-arm64-cpython-311/MACS2/IO/BedGraphIO.so building 'MACS2.IO.FixWidthTrack' extension clang -pipe -Os -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/lib/python3.11/site-packages/numpy/_core/include -I/opt/pkg/include/python3.11 -c MACS2/IO/FixWidthTrack.c -o build/temp.macosx-12.3-arm64-cpython-311/MACS2/IO/FixWidthTrack.o -w -O3 -ffast-math -g0 In file included from MACS2/IO/FixWidthTrack.c:1259: In file included from /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/arrayobject.h:5: In file included from /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12: In file included from /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1913: /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. clang -bundle -undefined dynamic_lookup -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -pipe -Os -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -I/opt/pkg/include build/temp.macosx-12.3-arm64-cpython-311/MACS2/IO/FixWidthTrack.o -L/opt/pkg/lib -o build/lib.macosx-12.3-arm64-cpython-311/MACS2/IO/FixWidthTrack.so building 'MACS2.IO.PairedEndTrack' extension clang -pipe -Os -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/lib/python3.11/site-packages/numpy/_core/include -I/opt/pkg/include/python3.11 -c MACS2/IO/PairedEndTrack.c -o build/temp.macosx-12.3-arm64-cpython-311/MACS2/IO/PairedEndTrack.o -w -O3 -ffast-math -g0 In file included from MACS2/IO/PairedEndTrack.c:1257: In file included from /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/arrayobject.h:5: In file included from /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12: In file included from /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1913: /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. clang -bundle -undefined dynamic_lookup -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -pipe -Os -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -I/opt/pkg/include build/temp.macosx-12.3-arm64-cpython-311/MACS2/IO/PairedEndTrack.o -L/opt/pkg/lib -o build/lib.macosx-12.3-arm64-cpython-311/MACS2/IO/PairedEndTrack.so building 'MACS2.IO.BedGraph' extension clang -pipe -Os -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -c MACS2/IO/BedGraph.c -o build/temp.macosx-12.3-arm64-cpython-311/MACS2/IO/BedGraph.o -w -O3 -ffast-math -g0 clang -bundle -undefined dynamic_lookup -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -pipe -Os -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -I/opt/pkg/include build/temp.macosx-12.3-arm64-cpython-311/MACS2/IO/BedGraph.o -L/opt/pkg/lib -lm -o build/lib.macosx-12.3-arm64-cpython-311/MACS2/IO/BedGraph.so building 'MACS2.IO.ScoreTrack' extension clang -pipe -Os -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/lib/python3.11/site-packages/numpy/_core/include -I/opt/pkg/include/python3.11 -c MACS2/IO/ScoreTrack.c -o build/temp.macosx-12.3-arm64-cpython-311/MACS2/IO/ScoreTrack.o -w -O3 -ffast-math -g0 In file included from MACS2/IO/ScoreTrack.c:1257: In file included from /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/arrayobject.h:5: In file included from /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12: In file included from /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1913: /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. clang -bundle -undefined dynamic_lookup -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -pipe -Os -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -I/opt/pkg/include build/temp.macosx-12.3-arm64-cpython-311/MACS2/IO/ScoreTrack.o -L/opt/pkg/lib -o build/lib.macosx-12.3-arm64-cpython-311/MACS2/IO/ScoreTrack.so building 'MACS2.IO.CallPeakUnit' extension clang -pipe -Os -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/lib/python3.11/site-packages/numpy/_core/include -I/opt/pkg/include/python3.11 -c MACS2/IO/CallPeakUnit.c -o build/temp.macosx-12.3-arm64-cpython-311/MACS2/IO/CallPeakUnit.o -w -O3 -ffast-math -g0 In file included from MACS2/IO/CallPeakUnit.c:1257: In file included from /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/arrayobject.h:5: In file included from /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12: In file included from /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1913: /Users/pbulk/build/biology/py-macs2/work/.buildlink/lib/python3.11/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ MACS2/IO/CallPeakUnit.c:18780:54: warning: format string is not a string literal (potentially insecure) [-Wformat-security] (void)(fprintf(__pyx_v_self->bedGraph_treat_f, __pyx_t_12)); ^~~~~~~~~~ MACS2/IO/CallPeakUnit.c:18780:54: note: treat the string as an argument to avoid this (void)(fprintf(__pyx_v_self->bedGraph_treat_f, __pyx_t_12)); ^ "%s", MACS2/IO/CallPeakUnit.c:18811:53: warning: format string is not a string literal (potentially insecure) [-Wformat-security] (void)(fprintf(__pyx_v_self->bedGraph_ctrl_f, __pyx_t_12)); ^~~~~~~~~~ MACS2/IO/CallPeakUnit.c:18811:53: note: treat the string as an argument to avoid this (void)(fprintf(__pyx_v_self->bedGraph_ctrl_f, __pyx_t_12)); ^ "%s", MACS2/IO/CallPeakUnit.c:25767:54: warning: format string is not a string literal (potentially insecure) [-Wformat-security] (void)(fprintf(__pyx_v_self->bedGraph_treat_f, __pyx_t_13)); ^~~~~~~~~~ MACS2/IO/CallPeakUnit.c:25767:54: note: treat the string as an argument to avoid this (void)(fprintf(__pyx_v_self->bedGraph_treat_f, __pyx_t_13)); ^ "%s", MACS2/IO/CallPeakUnit.c:25794:53: warning: format string is not a string literal (potentially insecure) [-Wformat-security] (void)(fprintf(__pyx_v_self->bedGraph_ctrl_f, __pyx_t_13)); ^~~~~~~~~~ MACS2/IO/CallPeakUnit.c:25794:53: note: treat the string as an argument to avoid this (void)(fprintf(__pyx_v_self->bedGraph_ctrl_f, __pyx_t_13)); ^ "%s", 5 warnings generated. clang -bundle -undefined dynamic_lookup -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -pipe -Os -I/opt/pkg/include/python3.11 -I/opt/pkg/include -I/opt/pkg/include/python3.11 -I/opt/pkg/include build/temp.macosx-12.3-arm64-cpython-311/MACS2/IO/CallPeakUnit.o -L/opt/pkg/lib -o build/lib.macosx-12.3-arm64-cpython-311/MACS2/IO/CallPeakUnit.so running build_scripts creating build/scripts-3.11 copying and adjusting bin/macs2 -> build/scripts-3.11 changing mode of build/scripts-3.11/macs2 from 644 to 755 installing to build/bdist.macosx-12.3-arm64/wheel running install running install_lib creating build/bdist.macosx-12.3-arm64/wheel creating build/bdist.macosx-12.3-arm64/wheel/MACS2 copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/Constants.py -> build/bdist.macosx-12.3-arm64/wheel/./MACS2 creating build/bdist.macosx-12.3-arm64/wheel/MACS2/IO copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/IO/BedGraph.so -> build/bdist.macosx-12.3-arm64/wheel/./MACS2/IO copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/IO/BedGraphIO.so -> build/bdist.macosx-12.3-arm64/wheel/./MACS2/IO copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/IO/CallPeakUnit.so -> build/bdist.macosx-12.3-arm64/wheel/./MACS2/IO copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/IO/FixWidthTrack.so -> build/bdist.macosx-12.3-arm64/wheel/./MACS2/IO copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/IO/PairedEndTrack.so -> build/bdist.macosx-12.3-arm64/wheel/./MACS2/IO copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/IO/Parser.so -> build/bdist.macosx-12.3-arm64/wheel/./MACS2/IO copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/IO/PeakIO.so -> build/bdist.macosx-12.3-arm64/wheel/./MACS2/IO copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/IO/ScoreTrack.so -> build/bdist.macosx-12.3-arm64/wheel/./MACS2/IO copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/IO/__init__.py -> build/bdist.macosx-12.3-arm64/wheel/./MACS2/IO copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/OptValidator.py -> build/bdist.macosx-12.3-arm64/wheel/./MACS2 copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/OutputWriter.py -> build/bdist.macosx-12.3-arm64/wheel/./MACS2 copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/PeakDetect.so -> build/bdist.macosx-12.3-arm64/wheel/./MACS2 copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/PeakModel.so -> build/bdist.macosx-12.3-arm64/wheel/./MACS2 copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/Pileup.so -> build/bdist.macosx-12.3-arm64/wheel/./MACS2 copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/Prob.so -> build/bdist.macosx-12.3-arm64/wheel/./MACS2 copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/Signal.so -> build/bdist.macosx-12.3-arm64/wheel/./MACS2 copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/__init__.py -> build/bdist.macosx-12.3-arm64/wheel/./MACS2 copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/bdgbroadcall_cmd.py -> build/bdist.macosx-12.3-arm64/wheel/./MACS2 copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/bdgcmp_cmd.py -> build/bdist.macosx-12.3-arm64/wheel/./MACS2 copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/bdgdiff_cmd.py -> build/bdist.macosx-12.3-arm64/wheel/./MACS2 copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/bdgopt_cmd.py -> build/bdist.macosx-12.3-arm64/wheel/./MACS2 copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/bdgpeakcall_cmd.py -> build/bdist.macosx-12.3-arm64/wheel/./MACS2 copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/cPosValCalculation.pxd -> build/bdist.macosx-12.3-arm64/wheel/./MACS2 copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/callpeak_cmd.py -> build/bdist.macosx-12.3-arm64/wheel/./MACS2 copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/cmbreps_cmd.py -> build/bdist.macosx-12.3-arm64/wheel/./MACS2 copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/diffpeak_cmd.py -> build/bdist.macosx-12.3-arm64/wheel/./MACS2 copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/filterdup_cmd.py -> build/bdist.macosx-12.3-arm64/wheel/./MACS2 copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/khash.pxd -> build/bdist.macosx-12.3-arm64/wheel/./MACS2 copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/pileup_cmd.py -> build/bdist.macosx-12.3-arm64/wheel/./MACS2 copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/predictd_cmd.py -> build/bdist.macosx-12.3-arm64/wheel/./MACS2 copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/randsample_cmd.py -> build/bdist.macosx-12.3-arm64/wheel/./MACS2 copying build/lib.macosx-12.3-arm64-cpython-311/MACS2/refinepeak_cmd.py -> build/bdist.macosx-12.3-arm64/wheel/./MACS2 running install_egg_info running egg_info creating MACS2.egg-info writing MACS2.egg-info/PKG-INFO writing dependency_links to MACS2.egg-info/dependency_links.txt writing requirements to MACS2.egg-info/requires.txt writing top-level names to MACS2.egg-info/top_level.txt writing manifest file 'MACS2.egg-info/SOURCES.txt' dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /opt/pkg/lib/python3.11/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'MACS2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching '.gitignore' warning: no previously-included files found matching '.travis.yml' warning: no previously-included files matching '.ipynb_checkpoints/*' found anywhere in distribution no previously-included directories found matching '.github' no previously-included directories found matching 'DOCKER' adding license file 'LICENSE' writing manifest file 'MACS2.egg-info/SOURCES.txt' Copying MACS2.egg-info to build/bdist.macosx-12.3-arm64/wheel/./MACS2-2.2.9.1-py3.11.egg-info running install_scripts creating build/bdist.macosx-12.3-arm64/wheel/macs2-2.2.9.1.data/scripts copying build/scripts-3.11/macs2 -> build/bdist.macosx-12.3-arm64/wheel/macs2-2.2.9.1.data/scripts changing mode of build/bdist.macosx-12.3-arm64/wheel/macs2-2.2.9.1.data/scripts/macs2 to 755 creating build/bdist.macosx-12.3-arm64/wheel/macs2-2.2.9.1.dist-info/WHEEL creating '/Users/pbulk/build/biology/py-macs2/work/MACS-2.2.9.1/dist/.tmp-ei0m2y1r/macs2-2.2.9.1-cp311-cp311-macosx_12_0_arm64.whl' and adding 'build/bdist.macosx-12.3-arm64/wheel' to it adding 'MACS2/Constants.py' adding 'MACS2/OptValidator.py' adding 'MACS2/OutputWriter.py' adding 'MACS2/PeakDetect.so' adding 'MACS2/PeakModel.so' adding 'MACS2/Pileup.so' adding 'MACS2/Prob.so' adding 'MACS2/Signal.so' adding 'MACS2/__init__.py' adding 'MACS2/bdgbroadcall_cmd.py' adding 'MACS2/bdgcmp_cmd.py' adding 'MACS2/bdgdiff_cmd.py' adding 'MACS2/bdgopt_cmd.py' adding 'MACS2/bdgpeakcall_cmd.py' adding 'MACS2/cPosValCalculation.pxd' adding 'MACS2/callpeak_cmd.py' adding 'MACS2/cmbreps_cmd.py' adding 'MACS2/diffpeak_cmd.py' adding 'MACS2/filterdup_cmd.py' adding 'MACS2/khash.pxd' adding 'MACS2/pileup_cmd.py' adding 'MACS2/predictd_cmd.py' adding 'MACS2/randsample_cmd.py' adding 'MACS2/refinepeak_cmd.py' adding 'MACS2/IO/BedGraph.so' adding 'MACS2/IO/BedGraphIO.so' adding 'MACS2/IO/CallPeakUnit.so' adding 'MACS2/IO/FixWidthTrack.so' adding 'MACS2/IO/PairedEndTrack.so' adding 'MACS2/IO/Parser.so' adding 'MACS2/IO/PeakIO.so' adding 'MACS2/IO/ScoreTrack.so' adding 'MACS2/IO/__init__.py' adding 'macs2-2.2.9.1.data/scripts/macs2' adding 'macs2-2.2.9.1.dist-info/licenses/LICENSE' adding 'macs2-2.2.9.1.dist-info/METADATA' adding 'macs2-2.2.9.1.dist-info/WHEEL' adding 'macs2-2.2.9.1.dist-info/top_level.txt' adding 'macs2-2.2.9.1.dist-info/RECORD' removing build/bdist.macosx-12.3-arm64/wheel Successfully built macs2-2.2.9.1-cp311-cp311-macosx_12_0_arm64.whl