[*] cc -pipe -Os -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -c Bio/Align/_codonaligner.c -o build/temp.macosx-12.3-arm64-cpython-312/Bio/Align/_codonaligner.o
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -pipe -Os -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include/python3.12 -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include -c Bio/Align/_codonaligner.c -o build/temp.macosx-12.3-arm64-cpython-312/Bio/Align/_codonaligner.o -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -bundle -undefined dynamic_lookup -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -pipe -Os -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include build/temp.macosx-12.3-arm64-cpython-312/Bio/Align/_codonaligner.o -L/opt/pkg/lib -o build/lib.macosx-12.3-arm64-cpython-312/Bio/Align/_codonaligner.so
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -bundle -undefined dynamic_lookup -L/Users/pbulk/build/biology/py-biopython/work/.buildlink/lib -pipe -Os -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include/python3.12 -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include build/temp.macosx-12.3-arm64-cpython-312/Bio/Align/_codonaligner.o -o build/lib.macosx-12.3-arm64-cpython-312/Bio/Align/_codonaligner.so -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -pipe -Os -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -c Bio/Align/_pairwisealigner.c -o build/temp.macosx-12.3-arm64-cpython-312/Bio/Align/_pairwisealigner.o
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -pipe -Os -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include/python3.12 -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include -c Bio/Align/_pairwisealigner.c -o build/temp.macosx-12.3-arm64-cpython-312/Bio/Align/_pairwisealigner.o -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -bundle -undefined dynamic_lookup -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -pipe -Os -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include build/temp.macosx-12.3-arm64-cpython-312/Bio/Align/_pairwisealigner.o -L/opt/pkg/lib -o build/lib.macosx-12.3-arm64-cpython-312/Bio/Align/_pairwisealigner.so
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -bundle -undefined dynamic_lookup -L/Users/pbulk/build/biology/py-biopython/work/.buildlink/lib -pipe -Os -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include/python3.12 -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include build/temp.macosx-12.3-arm64-cpython-312/Bio/Align/_pairwisealigner.o -o build/lib.macosx-12.3-arm64-cpython-312/Bio/Align/_pairwisealigner.so -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -pipe -Os -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -c Bio/Align/_aligncore.c -o build/temp.macosx-12.3-arm64-cpython-312/Bio/Align/_aligncore.o
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -pipe -Os -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include/python3.12 -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include -c Bio/Align/_aligncore.c -o build/temp.macosx-12.3-arm64-cpython-312/Bio/Align/_aligncore.o -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -bundle -undefined dynamic_lookup -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -pipe -Os -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include build/temp.macosx-12.3-arm64-cpython-312/Bio/Align/_aligncore.o -L/opt/pkg/lib -o build/lib.macosx-12.3-arm64-cpython-312/Bio/Align/_aligncore.so
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -bundle -undefined dynamic_lookup -L/Users/pbulk/build/biology/py-biopython/work/.buildlink/lib -pipe -Os -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include/python3.12 -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include build/temp.macosx-12.3-arm64-cpython-312/Bio/Align/_aligncore.o -o build/lib.macosx-12.3-arm64-cpython-312/Bio/Align/_aligncore.so -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -pipe -Os -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -c Bio/cpairwise2module.c -o build/temp.macosx-12.3-arm64-cpython-312/Bio/cpairwise2module.o
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -pipe -Os -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include/python3.12 -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include -c Bio/cpairwise2module.c -o build/temp.macosx-12.3-arm64-cpython-312/Bio/cpairwise2module.o -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -bundle -undefined dynamic_lookup -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -pipe -Os -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include build/temp.macosx-12.3-arm64-cpython-312/Bio/cpairwise2module.o -L/opt/pkg/lib -o build/lib.macosx-12.3-arm64-cpython-312/Bio/cpairwise2.so
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -bundle -undefined dynamic_lookup -L/Users/pbulk/build/biology/py-biopython/work/.buildlink/lib -pipe -Os -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include/python3.12 -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include build/temp.macosx-12.3-arm64-cpython-312/Bio/cpairwise2module.o -o build/lib.macosx-12.3-arm64-cpython-312/Bio/cpairwise2.so -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -pipe -Os -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -c Bio/Nexus/cnexus.c -o build/temp.macosx-12.3-arm64-cpython-312/Bio/Nexus/cnexus.o
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -pipe -Os -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include/python3.12 -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include -c Bio/Nexus/cnexus.c -o build/temp.macosx-12.3-arm64-cpython-312/Bio/Nexus/cnexus.o -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -bundle -undefined dynamic_lookup -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -pipe -Os -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include build/temp.macosx-12.3-arm64-cpython-312/Bio/Nexus/cnexus.o -L/opt/pkg/lib -o build/lib.macosx-12.3-arm64-cpython-312/Bio/Nexus/cnexus.so
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -bundle -undefined dynamic_lookup -L/Users/pbulk/build/biology/py-biopython/work/.buildlink/lib -pipe -Os -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include/python3.12 -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include build/temp.macosx-12.3-arm64-cpython-312/Bio/Nexus/cnexus.o -o build/lib.macosx-12.3-arm64-cpython-312/Bio/Nexus/cnexus.so -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -pipe -Os -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -c Bio/motifs/_pwm.c -o build/temp.macosx-12.3-arm64-cpython-312/Bio/motifs/_pwm.o
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -pipe -Os -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include/python3.12 -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include -c Bio/motifs/_pwm.c -o build/temp.macosx-12.3-arm64-cpython-312/Bio/motifs/_pwm.o -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -bundle -undefined dynamic_lookup -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -pipe -Os -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include build/temp.macosx-12.3-arm64-cpython-312/Bio/motifs/_pwm.o -L/opt/pkg/lib -o build/lib.macosx-12.3-arm64-cpython-312/Bio/motifs/_pwm.so
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -bundle -undefined dynamic_lookup -L/Users/pbulk/build/biology/py-biopython/work/.buildlink/lib -pipe -Os -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include/python3.12 -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include build/temp.macosx-12.3-arm64-cpython-312/Bio/motifs/_pwm.o -o build/lib.macosx-12.3-arm64-cpython-312/Bio/motifs/_pwm.so -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -pipe -Os -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -c Bio/Cluster/cluster.c -o build/temp.macosx-12.3-arm64-cpython-312/Bio/Cluster/cluster.o -DCLUSTER_USE_PYTHON_MEMORY
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -pipe -Os -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include/python3.12 -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include -c Bio/Cluster/cluster.c -o build/temp.macosx-12.3-arm64-cpython-312/Bio/Cluster/cluster.o -DCLUSTER_USE_PYTHON_MEMORY -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -pipe -Os -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -c Bio/Cluster/clustermodule.c -o build/temp.macosx-12.3-arm64-cpython-312/Bio/Cluster/clustermodule.o -DCLUSTER_USE_PYTHON_MEMORY
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -pipe -Os -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include/python3.12 -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include -c Bio/Cluster/clustermodule.c -o build/temp.macosx-12.3-arm64-cpython-312/Bio/Cluster/clustermodule.o -DCLUSTER_USE_PYTHON_MEMORY -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -bundle -undefined dynamic_lookup -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -pipe -Os -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include build/temp.macosx-12.3-arm64-cpython-312/Bio/Cluster/cluster.o build/temp.macosx-12.3-arm64-cpython-312/Bio/Cluster/clustermodule.o -L/opt/pkg/lib -o build/lib.macosx-12.3-arm64-cpython-312/Bio/Cluster/_cluster.so
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -bundle -undefined dynamic_lookup -L/Users/pbulk/build/biology/py-biopython/work/.buildlink/lib -pipe -Os -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include/python3.12 -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include build/temp.macosx-12.3-arm64-cpython-312/Bio/Cluster/cluster.o build/temp.macosx-12.3-arm64-cpython-312/Bio/Cluster/clustermodule.o -o build/lib.macosx-12.3-arm64-cpython-312/Bio/Cluster/_cluster.so -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -pipe -Os -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -c Bio/PDB/ccealignmodule.c -o build/temp.macosx-12.3-arm64-cpython-312/Bio/PDB/ccealignmodule.o
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -pipe -Os -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include/python3.12 -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include -c Bio/PDB/ccealignmodule.c -o build/temp.macosx-12.3-arm64-cpython-312/Bio/PDB/ccealignmodule.o -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -bundle -undefined dynamic_lookup -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -pipe -Os -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include build/temp.macosx-12.3-arm64-cpython-312/Bio/PDB/ccealignmodule.o -L/opt/pkg/lib -o build/lib.macosx-12.3-arm64-cpython-312/Bio/PDB/ccealign.so
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -bundle -undefined dynamic_lookup -L/Users/pbulk/build/biology/py-biopython/work/.buildlink/lib -pipe -Os -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include/python3.12 -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include build/temp.macosx-12.3-arm64-cpython-312/Bio/PDB/ccealignmodule.o -o build/lib.macosx-12.3-arm64-cpython-312/Bio/PDB/ccealign.so -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -pipe -Os -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -c Bio/PDB/kdtrees.c -o build/temp.macosx-12.3-arm64-cpython-312/Bio/PDB/kdtrees.o
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -pipe -Os -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include/python3.12 -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include -c Bio/PDB/kdtrees.c -o build/temp.macosx-12.3-arm64-cpython-312/Bio/PDB/kdtrees.o -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -bundle -undefined dynamic_lookup -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -pipe -Os -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include build/temp.macosx-12.3-arm64-cpython-312/Bio/PDB/kdtrees.o -L/opt/pkg/lib -o build/lib.macosx-12.3-arm64-cpython-312/Bio/PDB/kdtrees.so
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -bundle -undefined dynamic_lookup -L/Users/pbulk/build/biology/py-biopython/work/.buildlink/lib -pipe -Os -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include/python3.12 -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include build/temp.macosx-12.3-arm64-cpython-312/Bio/PDB/kdtrees.o -o build/lib.macosx-12.3-arm64-cpython-312/Bio/PDB/kdtrees.so -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -pipe -Os -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -c Bio/PDB/bcifhelpermodule.c -o build/temp.macosx-12.3-arm64-cpython-312/Bio/PDB/bcifhelpermodule.o
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -pipe -Os -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include/python3.12 -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include -c Bio/PDB/bcifhelpermodule.c -o build/temp.macosx-12.3-arm64-cpython-312/Bio/PDB/bcifhelpermodule.o -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -bundle -undefined dynamic_lookup -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -pipe -Os -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include build/temp.macosx-12.3-arm64-cpython-312/Bio/PDB/bcifhelpermodule.o -L/opt/pkg/lib -o build/lib.macosx-12.3-arm64-cpython-312/Bio/PDB/_bcif_helper.so
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -bundle -undefined dynamic_lookup -L/Users/pbulk/build/biology/py-biopython/work/.buildlink/lib -pipe -Os -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include/python3.12 -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include build/temp.macosx-12.3-arm64-cpython-312/Bio/PDB/bcifhelpermodule.o -o build/lib.macosx-12.3-arm64-cpython-312/Bio/PDB/_bcif_helper.so -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -pipe -Os -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -c Bio/SeqIO/_twoBitIO.c -o build/temp.macosx-12.3-arm64-cpython-312/Bio/SeqIO/_twoBitIO.o
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -pipe -Os -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include/python3.12 -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include -c Bio/SeqIO/_twoBitIO.c -o build/temp.macosx-12.3-arm64-cpython-312/Bio/SeqIO/_twoBitIO.o -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -bundle -undefined dynamic_lookup -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -L/usr/lib -L/opt/pkg/lib -pipe -Os -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include build/temp.macosx-12.3-arm64-cpython-312/Bio/SeqIO/_twoBitIO.o -L/opt/pkg/lib -o build/lib.macosx-12.3-arm64-cpython-312/Bio/SeqIO/_twoBitIO.so
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -bundle -undefined dynamic_lookup -L/Users/pbulk/build/biology/py-biopython/work/.buildlink/lib -pipe -Os -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include/python3.12 -I/Users/pbulk/build/biology/py-biopython/work/.buildlink/include build/temp.macosx-12.3-arm64-cpython-312/Bio/SeqIO/_twoBitIO.o -o build/lib.macosx-12.3-arm64-cpython-312/Bio/SeqIO/_twoBitIO.so -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk