[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir conf5014.dir
<.> /bin/mkdir -p conf5014.dir
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir -p .
<.> /bin/mkdir -p -p .
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir --version
<.> /bin/mkdir -p --version
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir .tst
<.> /bin/mkdir -p .tst
[*] cc --version
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 --version -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] cc -v
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -v -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] cc -V
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -V -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] cc -pipe -Os -I/opt/pkg/include -I/opt/pkg/include -L/opt/pkg/lib conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -o conftest -pipe -Os -I/opt/pkg/include -I/opt/pkg/include -L/opt/pkg/lib conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -o conftest -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -c -g -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -g -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir conftest.dir
<.> /bin/mkdir -p conftest.dir
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir sub
<.> /bin/mkdir -p sub
[*] cc -MT sub/conftest.o -MD -MP -MF sub/conftest.TPo -c -o sub/conftest.o sub/conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -MT sub/conftest.o -MD -MP -MF sub/conftest.TPo -c -o sub/conftest.o sub/conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] cc -print-prog-name=ld
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -print-prog-name=ld -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -o conftest -pipe -Os -I/opt/pkg/include -I/opt/pkg/include -L/opt/pkg/lib conftest.c conftstm.o
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -o conftest -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib conftest.c conftstm.o -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -pipe -Os -I/opt/pkg/include -L/opt/pkg/lib -o libconftest.dylib -dynamiclib -Wl,-single_module conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib -o libconftest.dylib -dynamiclib -Wl,-single_module conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -o conftest -pipe -Os -I/opt/pkg/include -I/opt/pkg/include -L/opt/pkg/lib -Wl,-exported_symbols_list,conftest.sym conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -o conftest -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib -Wl,-exported_symbols_list -Wl,conftest.sym conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -E -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -E -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -E -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -E -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -E -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -E -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -E -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -E -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -E -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -E -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -E -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -E -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -o conftest -pipe -Os -I/opt/pkg/include -I/opt/pkg/include -L/opt/pkg/lib conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -o conftest -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir .libs
<.> /bin/mkdir -p .libs
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -o conftest -pipe -Os -I/opt/pkg/include -I/opt/pkg/include -L/opt/pkg/lib conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -o conftest -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include -fno-rtti -fno-exceptions conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -fno-rtti -fno-exceptions conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include -fno-common -DPIC -DPIC conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -fno-common -DPIC -DPIC conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -o conftest -pipe -Os -I/opt/pkg/include -I/opt/pkg/include -L/opt/pkg/lib -static conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -o conftest -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib -static conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir conftest
<.> /bin/mkdir -p conftest
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir out
<.> /bin/mkdir -p out
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include -o out/conftest2.o conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -o out/conftest2.o conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -print-search-dirs
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -print-search-dirs -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] cc -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -L/opt/pkg/lib -print-multi-os-directory
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib -print-multi-os-directory -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] cc -o conftest -pipe -Os -I/opt/pkg/include -I/opt/pkg/include -L/opt/pkg/lib conftest.c -lprotobuf
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -o conftest -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib conftest.c -lprotobuf -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
[*] c++ --version
<.> /usr/bin/clang++ -m64 --version -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -std=c++14 -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] c++ -v
<.> /usr/bin/clang++ -m64 -v -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -std=c++14 -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] c++ -V
<.> /usr/bin/clang++ -m64 -V -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -std=c++14 -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] c++ -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.cpp
<.> /usr/bin/clang++ -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.cpp -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -std=c++14
[*] c++ -c -g -I/opt/pkg/include conftest.cpp
<.> /usr/bin/clang++ -m64 -c -g -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.cpp -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -std=c++14
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir conftest.dir
<.> /bin/mkdir -p conftest.dir
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir sub
<.> /bin/mkdir -p sub
[*] c++ -MT sub/conftest.o -MD -MP -MF sub/conftest.TPo -c -o sub/conftest.o sub/conftest.c
<.> /usr/bin/clang++ -m64 -MT sub/conftest.o -MD -MP -MF sub/conftest.TPo -c -o sub/conftest.o sub/conftest.c -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -std=c++14 -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] c++ --version
<.> /usr/bin/clang++ -m64 --version -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -std=c++14 -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] c++ -v
<.> /usr/bin/clang++ -m64 -v -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -std=c++14 -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] c++ -V
<.> /usr/bin/clang++ -m64 -V -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -std=c++14 -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] c++ -E -I/opt/pkg/include conftest.cpp
<.> /usr/bin/clang++ -m64 -E -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.cpp -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -std=c++14
[*] c++ -E -I/opt/pkg/include conftest.cpp
<.> /usr/bin/clang++ -m64 -E -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.cpp -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -std=c++14
[*] c++ -E -I/opt/pkg/include conftest.cpp
<.> /usr/bin/clang++ -m64 -E -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.cpp -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -std=c++14
[*] c++ -E -I/opt/pkg/include conftest.cpp
<.> /usr/bin/clang++ -m64 -E -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.cpp -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -std=c++14
[*] c++ -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.cpp
<.> /usr/bin/clang++ -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.cpp -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -std=c++14
[*] c++ -o conftest -pipe -Os -I/opt/pkg/include -I/opt/pkg/include -L/opt/pkg/lib conftest.cpp
<.> /usr/bin/clang++ -m64 -o conftest -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib conftest.cpp -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -std=c++14
[*] c++ -print-prog-name=ld
<.> /usr/bin/clang++ -m64 -print-prog-name=ld -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -std=c++14 -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] c++ -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.cpp
<.> /usr/bin/clang++ -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.cpp -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -std=c++14
[*] c++ -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include -fno-common -DPIC -DPIC conftest.cpp
<.> /usr/bin/clang++ -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -fno-common -DPIC -DPIC conftest.cpp -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -std=c++14
[*] c++ -o conftest -pipe -Os -I/opt/pkg/include -I/opt/pkg/include -L/opt/pkg/lib -static conftest.cpp
<.> /usr/bin/clang++ -m64 -o conftest -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib -static conftest.cpp -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -std=c++14
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir conftest
<.> /bin/mkdir -p conftest
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir out
<.> /bin/mkdir -p out
[*] c++ -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include -o out/conftest2.o conftest.cpp
<.> /usr/bin/clang++ -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -o out/conftest2.o conftest.cpp -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -std=c++14
[*] cc --version
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 --version -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] cc -v
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -v -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] cc -V
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -V -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir conf11957.dir
<.> /bin/mkdir -p conf11957.dir
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir -p .
<.> /bin/mkdir -p -p .
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir -p lib/./.deps
<.> /bin/mkdir -p -p lib/./.deps
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir -p client/./.deps
<.> /bin/mkdir -p -p client/./.deps
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir -p browser/./.deps
<.> /bin/mkdir -p -p browser/./.deps
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir -p index/./.deps
<.> /bin/mkdir -p -p index/./.deps
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir -p util/./.deps
<.> /bin/mkdir -p -p util/./.deps
[*] libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-eval.lo -MD -MP -MF .deps/libplinkseq_la-eval.Tpo -c -o libplinkseq_la-eval.lo eval.cpp
<.> /opt/pkg/bin/libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-eval.lo -MD -MP -MF .deps/libplinkseq_la-eval.Tpo -c -o libplinkseq_la-eval.lo eval.cpp
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir .libs
<.> /bin/mkdir -p .libs
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-eval.lo -MD -MP -MF .deps/libplinkseq_la-eval.Tpo -c eval.cpp -fno-common -DPIC -o .libs/libplinkseq_la-eval.o
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-eval.lo -MD -MP -MF .deps/libplinkseq_la-eval.Tpo -c eval.cpp -fno-common -DPIC -o .libs/libplinkseq_la-eval.o -isysroot /Applications/Xcode-13.4.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -std=c++14