=> Checksum BLAKE2s OK for R-4.4.2.tar.gz => Checksum SHA512 OK for R-4.4.2.tar.gz ===> Installing dependencies for R-4.4.2nb7 ========================================================================== The following variables will affect the build process of this package, R-4.4.2nb7. Their current value is shown below: * CURSES_DEFAULT = ncurses * JPEG_DEFAULT = libjpeg-turbo * SSLBASE (defined) * SSLCERTBUNDLE (not defined) * SSLCERTS = /opt/pkg/etc/openssl/certs * SSLDIR = /opt/pkg/etc/openssl * SSLKEYS = /opt/pkg/etc/openssl/private Based on these variables, the following variables have been set: * CURSES_TYPE = ncurses * JPEGBASE (defined, but empty) * JPEG_TYPE = libjpeg-turbo * TERMCAP_TYPE = curses You may want to abort the process now with CTRL-C and change the value of variables in the first group before continuing. Be sure to run `/opt/pkg/bin/bmake clean' after the changes. ========================================================================== => Tool dependency glib2-tools-[0-9]*: found glib2-tools-2.84.3 => Tool dependency libtool-fortran>=2.4.2nb9: found libtool-fortran-2.4.7nb1 => Tool dependency libtool-base>=2.4.2nb9: found libtool-base-2.4.7nb1 => Tool dependency automake>=1.9: found automake-1.18 => Tool dependency autoconf>=2.58: found autoconf-2.72 => Tool dependency gmake>=3.81: found gmake-4.4.1 => Tool dependency gtexinfo>=5.1: found gtexinfo-7.2nb1 => Tool dependency nbpatch-[0-9]*: found nbpatch-20151107 => Tool dependency pkgconf-[0-9]*: found pkgconf-2.4.3nb1 => Tool dependency cwrappers>=20150314: found cwrappers-20220403 => Tool dependency checkperms>=1.1: found checkperms-1.12 => Full dependency pkg_install-info-[0-9]*: found pkg_install-info-4.5nb3 => Full dependency perl>=5.0: found perl-5.42.0 => Full dependency bzip2>=1.0.5: found bzip2-1.0.8 => Full dependency cairo>=1.18.0nb2: found cairo-1.18.4 => Full dependency curl>=8.13.0nb2: found curl-8.14.1 => Full dependency gcc14-libs>=14.2.0: found gcc14-libs-14.2.0 => Full dependency gettext-lib>=0.22: found gettext-lib-0.22.5 => Full dependency glib2>=2.76.4nb1: found glib2-2.84.3 => Full dependency libiconv>=1.9.1nb4: found libiconv-1.17nb1 => Full dependency libjpeg-turbo>=1.1.0: found libjpeg-turbo-3.1.1 => Full dependency pango>=1.55.5: found pango-1.56.4nb1 => Full dependency pcre2>=10.30: found pcre2-10.45 => Full dependency png>=1.6.0nb1: found png-1.6.50 => Full dependency readline>=6.0: found readline-8.2nb2 => Full dependency tiff>=4.7.0nb1: found tiff-4.7.0nb1 => Full dependency tk>=8.6.13nb1: found tk-8.6.16 => Full dependency xz>=5.0.0: found xz-5.8.1 => Full dependency zlib>=1.2.3: found zlib-1.3.1 => Build dependency xcb-proto>=1.4: found xcb-proto-1.17.0nb5 => Build dependency xorgproto>=2016.1: found xorgproto-2024.1 => Full dependency brotli>=1.0.1: found brotli-1.1.0 => Full dependency cyrus-sasl>=2.1.12: found cyrus-sasl-2.1.28nb2 => Full dependency expat>=1.95.7: found expat-2.7.1 => Full dependency fontconfig>=2.15.0: found fontconfig-2.15.0 => Full dependency freetype2>=2.13.0: found freetype2-2.13.3nb1 => Full dependency fribidi>=0.19.1: found fribidi-1.0.16 => Full dependency graphite2>=1.2: found graphite2-1.3.14nb3 => Full dependency harfbuzz>=2.1.1: found harfbuzz-11.2.1nb1 => Full dependency jbigkit>=2.0: found jbigkit-2.1nb1 => Full dependency libX11>=1.1: found libX11-1.8.12 => Full dependency libXScrnSaver>=1.1.2: found libXScrnSaver-1.2.4 => Full dependency libXau>=1.0: found libXau-1.0.12 => Full dependency libXdmcp>=0.99: found libXdmcp-1.1.5 => Full dependency libXext>=0.99.0: found libXext-1.3.6 => Full dependency libXft>=2.1.10: found libXft-2.3.9 => Full dependency libXrender>=0.9.2: found libXrender-0.9.12 => Full dependency libffi>=1.20: found libffi-3.5.1 => Full dependency libidn2>=2.0.0: found libidn2-2.3.7 => Full dependency libssh2>=0.18: found libssh2-1.11.1 => Full dependency libunistring>=0.9.3: found libunistring-1.2 => Full dependency libxcb>=1.6: found libxcb-1.17.0 => Full dependency libxml2>=2.6.2: found libxml2-2.14.5 => Full dependency lzo>=2.01: found lzo-2.10 => Full dependency ncurses>=5.3nb1: found ncurses-6.5nb1 => Full dependency nghttp2>=1.0.0: found nghttp2-1.66.0 => Full dependency openldap-client>=2.4.6: found openldap-client-2.6.10 => Full dependency openssl>=1.1.1: found openssl-3.5.1 => Full dependency pixman>=0.40.0: found pixman-0.46.4 => Full dependency tcl>=8.5.7: found tcl-8.6.16nb3 ===> Overriding tools for R-4.4.2nb7 ===> Extracting for R-4.4.2nb7 ===> Patching for R-4.4.2nb7 => Applying pkgsrc patches for R-4.4.2nb7 => Verifying /Volumes/data/jenkins/workspace/pkgsrc-macos-trunk-arm64/math/R/patches/patch-configure.ac => Applying pkgsrc patch /Volumes/data/jenkins/workspace/pkgsrc-macos-trunk-arm64/math/R/patches/patch-configure.ac Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-configure.ac,v 1.12 2025/03/02 11:38:51 mef Exp $ | |Do not include system paths in R_LD_LIBRARY_PATH. |NetBSD, FreeBSD, DragonFly, Darwin and Solaris fixes | |--- configure.ac.orig 2024-03-26 23:02:03.000000000 +0000 |+++ configure.ac -------------------------- Patching file configure.ac using Plan A... Hunk #1 succeeded at 33. Hunk #2 succeeded at 137. Hunk #3 succeeded at 317. Hunk #4 succeeded at 899. Hunk #5 succeeded at 1550. Hunk #6 succeeded at 1639. Hunk #7 succeeded at 1681. Hunk #8 succeeded at 1775. Hunk #9 succeeded at 1835. Hunk #10 succeeded at 2834. Hunk #11 succeeded at 3004. done => Verifying /Volumes/data/jenkins/workspace/pkgsrc-macos-trunk-arm64/math/R/patches/patch-m4_R.m4 => Applying pkgsrc patch /Volumes/data/jenkins/workspace/pkgsrc-macos-trunk-arm64/math/R/patches/patch-m4_R.m4 Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-m4_R.m4,v 1.6 2024/05/27 20:45:14 mef Exp $ | |Ensure tests for clog & co. fail, not just emit warning | |--- m4/R.m4.orig 2024-04-05 07:15:01.000000000 +0900 |+++ m4/R.m4 2024-04-28 23:55:22.817246115 +0900 -------------------------- Patching file m4/R.m4 using Plan A... Hunk #1 succeeded at 1. Hunk #2 succeeded at 927. Hunk #3 succeeded at 1025. Hunk #4 succeeded at 4087. Hunk #5 succeeded at 4911. done => Verifying /Volumes/data/jenkins/workspace/pkgsrc-macos-trunk-arm64/math/R/patches/patch-src_extra_xdr_xdr__mem.c => Applying pkgsrc patch /Volumes/data/jenkins/workspace/pkgsrc-macos-trunk-arm64/math/R/patches/patch-src_extra_xdr_xdr__mem.c Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-src_extra_xdr_xdr__mem.c,v 1.1 2025/01/20 21:26:02 he Exp $ | |Don't do the ntohl() / htonl() dance on NetBSD. | |--- ./src/extra/xdr/xdr_mem.c.orig 2025-01-20 17:36:36.874607200 +0000 |+++ ./src/extra/xdr/xdr_mem.c -------------------------- Patching file ./src/extra/xdr/xdr_mem.c using Plan A... Hunk #1 succeeded at 24. Hunk #2 succeeded at 35. done => Verifying /Volumes/data/jenkins/workspace/pkgsrc-macos-trunk-arm64/math/R/patches/patch-src_extra_xdr_xdr__stdio.c => Applying pkgsrc patch /Volumes/data/jenkins/workspace/pkgsrc-macos-trunk-arm64/math/R/patches/patch-src_extra_xdr_xdr__stdio.c Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-src_extra_xdr_xdr__stdio.c,v 1.1 2025/01/20 21:26:02 he Exp $ | |Don't do the ntohl() / htonl() dance on NetBSD. | |--- src/extra/xdr/xdr_stdio.c.orig 2025-01-20 17:42:42.369938152 +0000 |+++ src/extra/xdr/xdr_stdio.c -------------------------- Patching file src/extra/xdr/xdr_stdio.c using Plan A... Hunk #1 succeeded at 20. Hunk #2 succeeded at 32. done => Verifying /Volumes/data/jenkins/workspace/pkgsrc-macos-trunk-arm64/math/R/patches/patch-src_include_R__ext_Error.h => Applying pkgsrc patch /Volumes/data/jenkins/workspace/pkgsrc-macos-trunk-arm64/math/R/patches/patch-src_include_R__ext_Error.h Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-src_include_R__ext_Error.h,v 1.3 2025/03/02 11:38:51 mef Exp $ | |Fix building with C++. | |--- src/include/R_ext/Error.h.orig 2024-03-05 16:09:06.557665563 +0000 |+++ src/include/R_ext/Error.h -------------------------- Patching file src/include/R_ext/Error.h using Plan A... Hunk #1 succeeded at 37 (offset 2 lines). done => Verifying /Volumes/data/jenkins/workspace/pkgsrc-macos-trunk-arm64/math/R/patches/patch-src_library_stats_src_Makefile.in => Applying pkgsrc patch /Volumes/data/jenkins/workspace/pkgsrc-macos-trunk-arm64/math/R/patches/patch-src_library_stats_src_Makefile.in Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-src_library_stats_src_Makefile.in,v 1.2 2016/07/26 04:53:33 wen Exp $ | |${R_INCLUDE_DIR} is used in the default compiler flags. | |--- src/library/stats/src/Makefile.in.orig 2016-07-26 01:57:49.000000000 +0000 |+++ src/library/stats/src/Makefile.in -------------------------- Patching file src/library/stats/src/Makefile.in using Plan A... Hunk #1 succeeded at 10. done => Verifying /Volumes/data/jenkins/workspace/pkgsrc-macos-trunk-arm64/math/R/patches/patch-src_main_character.c => Applying pkgsrc patch /Volumes/data/jenkins/workspace/pkgsrc-macos-trunk-arm64/math/R/patches/patch-src_main_character.c Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-src_main_character.c,v 1.7 2024/02/15 07:48:50 markd Exp $ | |rename strtoi() to avoild conflict with NetBSD function. | |--- src/main/character.c.orig 2023-07-04 22:15:01.000000000 +0000 |+++ src/main/character.c -------------------------- Patching file src/main/character.c using Plan A... Hunk #1 succeeded at 1750 (offset 1 line). Hunk #2 succeeded at 1783 (offset 1 line). done ===> Creating toolchain wrappers for R-4.4.2nb7 /opt/pkg/bin/nbsed -e '/^#/d' -e 's,@LIBGCC_PREFIX@,/opt/pkg/gcc14/aarch64-apple-darwin23,g' < ../../extra/gcc14-macos-libs/files/specs.pkgsrc > /Users/pbulk/build/math/R/work/.cwrapper/specs.pkgsrc ===> Configuring for R-4.4.2nb7 autoreconf: export WARNINGS= autoreconf: Entering directory '.' autoreconf: configure.ac: not using Gettext autoreconf: running: aclocal --force configure.ac:1866: warning: macro 'AM_LANGINFO_CODESET' not found in library configure.ac:2437: warning: macro 'AM_NLS' not found in library configure.ac:2441: warning: macro 'AM_GNU_GETTEXT_VERSION' not found in library configure.ac:2442: warning: macro 'AM_GNU_GETTEXT' not found in library autoreconf: configure.ac: tracing configure.ac: warning: AM_GNU_GETTEXT is used, but not AM_GNU_GETTEXT_VERSION or AM_GNU_GETTEXT_REQUIRE_VERSION autoreconf: running: libtoolize --copy --force libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'tools'. libtoolize: copying file 'tools/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. autoreconf: configure.ac: not using Intltool autoreconf: configure.ac: not using Gtkdoc autoreconf: running: aclocal --force configure.ac:1866: warning: macro 'AM_LANGINFO_CODESET' not found in library configure.ac:2437: warning: macro 'AM_NLS' not found in library configure.ac:2441: warning: macro 'AM_GNU_GETTEXT_VERSION' not found in library configure.ac:2442: warning: macro 'AM_GNU_GETTEXT' not found in library autoreconf: running: /opt/pkg/bin/autoconf --force autoreconf: running: /opt/pkg/bin/autoheader --force autoreconf: configure.ac: not using Automake autoreconf: Leaving directory '.' => Modifying GNU configure scripts to avoid --recheck => Replacing config-guess with pkgsrc versions => Replacing config-sub with pkgsrc versions => Replacing install-sh with pkgsrc version checking build system type... aarch64-apple-darwin23 checking host system type... aarch64-apple-darwin23 loading site script './config.site' loading build-specific script './config.site' checking for pwd... /bin/pwd checking whether builddir is srcdir... yes checking whether ln -s works... yes checking for ar... ar checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g staff checking for sed... /opt/pkg/bin/nbsed checking for which... /usr/bin/which checking for less... /usr/bin/less checking for /usr/bin/tar... /usr/bin/tar checking for tex... no checking for pdftex... no configure: WARNING: you cannot build PDF versions of the R manuals checking for pdflatex... 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(cached) /usr/bin/egrep checking for GNU C library with version >= 2... no checking for uint64_t... yes checking for int64_t... yes checking for int_fast64_t... yes checking for pid_t... yes checking for size_t... yes checking whether SIZE_MAX is declared... yes checking for blkcnt_t... yes checking for type of socket length... socklen_t * checking for stack_t... yes checking for intptr_t... yes checking for uintptr_t... yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of double... 8 checking size of size_t... 8 checking for C stack direction... down checking size of long double... 8 checking whether we can compute C Make dependencies... yes, using $(CC) -MM checking whether clang supports -c -o FILE.lo... yes checking how to get verbose linking output from gfortran... configure: WARNING: compilation failed checking for Fortran libraries of gfortran... checking how to get verbose linking output from clang... -v checking for C libraries of clang... -lto_library -L/Users/pbulk/build/math/R/work/.buildlink/lib/R/lib -L/Users/pbulk/build/math/R/work/.buildlink/lib -lSystem /System/Volumes/Data/Applications/Xcode-13.4.1.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/13.1.6/lib/darwin/libclang_rt.osx.a checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... configure: error: in '/Users/pbulk/build/math/R/work/R-4.4.2': configure: error: cannot compile a simple Fortran program See 'config.log' for more details *** Error code 1 Stop. bmake[1]: stopped making "configure" in /Volumes/data/jenkins/workspace/pkgsrc-macos-trunk-arm64/math/R *** Error code 1 Stop. bmake: stopped making "configure" in /Volumes/data/jenkins/workspace/pkgsrc-macos-trunk-arm64/math/R