===> Building for plinkseq-0.08nb15 cd /Users/pbulk/build/biology/plinkseq/work/plinkseq-0.08/lib && protoc --cpp_out=. pp.proto && mv pp.pb.cc pp.pb.cpp cd /Users/pbulk/build/biology/plinkseq/work/plinkseq-0.08/lib && protoc --cpp_out=. variant.proto && mv variant.pb.cc variant.pb.cpp /opt/pkg/bin/bmake all-recursive Making all in lib /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-eval.lo -MD -MP -MF .deps/libplinkseq_la-eval.Tpo -c -o libplinkseq_la-eval.lo `test -f 'eval.cpp' || echo './'`eval.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-eval.lo -MD -MP -MF .deps/libplinkseq_la-eval.Tpo -c eval.cpp -fno-common -DPIC -o .libs/libplinkseq_la-eval.o In file included from eval.cpp:8: In file included from ./eval.h:4: In file included from ./token.h:4: In file included from ./variant.h:14: In file included from ./genotype.h:11: In file included from ./individual.h:8: In file included from ./meta.h:13: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from eval.cpp:8: In file included from ./eval.h:4: In file included from ./token.h:4: In file included from ./variant.h:14: In file included from ./genotype.h:11: In file included from ./individual.h:8: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from eval.cpp:8: ./eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ eval.cpp:304:10: warning: 12 enumeration values not handled in switch: 'UNDEF', 'INT', 'FLOAT'... [-Wswitch] switch(t) ^ eval.cpp:304:10: note: add missing switch cases switch(t) ^ eval.cpp:342:10: warning: 19 enumeration values not handled in switch: 'UNDEF', 'INT', 'FLOAT'... [-Wswitch] switch(t) ^ eval.cpp:342:10: note: add missing switch cases switch(t) ^ eval.cpp:365:11: warning: 14 enumeration values not handled in switch: 'UNDEF', 'INT', 'FLOAT'... [-Wswitch] switch( t ) ^ eval.cpp:365:11: note: add missing switch cases switch( t ) ^ 7 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-eval.lo -MD -MP -MF .deps/libplinkseq_la-eval.Tpo -c eval.cpp -o libplinkseq_la-eval.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-eval.Tpo .deps/libplinkseq_la-eval.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-token.lo -MD -MP -MF .deps/libplinkseq_la-token.Tpo -c -o libplinkseq_la-token.lo `test -f 'token.cpp' || echo './'`token.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-token.lo -MD -MP -MF .deps/libplinkseq_la-token.Tpo -c token.cpp -fno-common -DPIC -o .libs/libplinkseq_la-token.o In file included from token.cpp:2: In file included from ./token.h:4: In file included from ./variant.h:14: In file included from ./genotype.h:11: In file included from ./individual.h:8: In file included from ./meta.h:13: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from token.cpp:2: In file included from ./token.h:4: In file included from ./variant.h:14: In file included from ./genotype.h:11: In file included from ./individual.h:8: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from token.cpp:3: ./eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from token.cpp:5: In file included from ./gstore.h:15: ./vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ token.cpp:1797:11: warning: 16 enumeration values not handled in switch: 'UNDEF', 'INT', 'FLOAT'... [-Wswitch] switch( ttype ) ^ token.cpp:1797:11: note: add missing switch cases switch( ttype ) ^ token.cpp:1821:12: warning: 27 enumeration values not handled in switch: 'UNDEF', 'STRING', 'INT_VECTOR'... [-Wswitch] switch ( ttype ) ^ token.cpp:1821:12: note: add missing switch cases switch ( ttype ) ^ token.cpp:1839:12: warning: 27 enumeration values not handled in switch: 'UNDEF', 'STRING', 'INT_VECTOR'... [-Wswitch] switch ( ttype ) ^ token.cpp:1839:12: note: add missing switch cases switch ( ttype ) ^ token.cpp:2044:12: warning: 27 enumeration values not handled in switch: 'UNDEF', 'STRING', 'INT_VECTOR'... [-Wswitch] switch ( ttype ) ^ token.cpp:2044:12: note: add missing switch cases switch ( ttype ) ^ token.cpp:2087:12: warning: 27 enumeration values not handled in switch: 'UNDEF', 'STRING', 'INT_VECTOR'... [-Wswitch] switch ( ttype ) ^ token.cpp:2087:12: note: add missing switch cases switch ( ttype ) ^ token.cpp:2483:1: warning: non-void function does not return a value in all control paths [-Wreturn-type] } ^ 11 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-token.lo -MD -MP -MF .deps/libplinkseq_la-token.Tpo -c token.cpp -o libplinkseq_la-token.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-token.Tpo .deps/libplinkseq_la-token.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-vcfz.lo -MD -MP -MF .deps/libplinkseq_la-vcfz.Tpo -c -o libplinkseq_la-vcfz.lo `test -f 'vcfz.cpp' || echo './'`vcfz.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-vcfz.lo -MD -MP -MF .deps/libplinkseq_la-vcfz.Tpo -c vcfz.cpp -fno-common -DPIC -o .libs/libplinkseq_la-vcfz.o In file included from vcfz.cpp:2: In file included from ./vcfz.h:5: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from vcfz.cpp:2: In file included from ./vcfz.h:6: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from vcfz.cpp:4: In file included from ./vardb.h:8: In file included from ./mask.h:8: ./eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from vcfz.cpp:4: ./vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ 5 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-vcfz.lo -MD -MP -MF .deps/libplinkseq_la-vcfz.Tpo -c vcfz.cpp -o libplinkseq_la-vcfz.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-vcfz.Tpo .deps/libplinkseq_la-vcfz.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-gstore.lo -MD -MP -MF .deps/libplinkseq_la-gstore.Tpo -c -o libplinkseq_la-gstore.lo `test -f 'gstore.cpp' || echo './'`gstore.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-gstore.lo -MD -MP -MF .deps/libplinkseq_la-gstore.Tpo -c gstore.cpp -fno-common -DPIC -o .libs/libplinkseq_la-gstore.o In file included from gstore.cpp:2: In file included from ./gstore.h:6: In file included from ./variant.h:14: In file included from ./genotype.h:11: In file included from ./individual.h:8: In file included from ./meta.h:13: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from gstore.cpp:2: In file included from ./gstore.h:6: In file included from ./variant.h:14: In file included from ./genotype.h:11: In file included from ./individual.h:8: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from gstore.cpp:2: In file included from ./gstore.h:15: In file included from ./vardb.h:8: In file included from ./mask.h:8: ./eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from gstore.cpp:2: In file included from ./gstore.h:15: ./vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ 5 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-gstore.lo -MD -MP -MF .deps/libplinkseq_la-gstore.Tpo -c gstore.cpp -o libplinkseq_la-gstore.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-gstore.Tpo .deps/libplinkseq_la-gstore.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-globals.lo -MD -MP -MF .deps/libplinkseq_la-globals.Tpo -c -o libplinkseq_la-globals.lo `test -f 'globals.cpp' || echo './'`globals.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-globals.lo -MD -MP -MF .deps/libplinkseq_la-globals.Tpo -c globals.cpp -fno-common -DPIC -o .libs/libplinkseq_la-globals.o In file included from globals.cpp:1: In file included from ./gstore.h:6: In file included from ./variant.h:14: In file included from ./genotype.h:11: In file included from ./individual.h:8: In file included from ./meta.h:13: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from globals.cpp:1: In file included from ./gstore.h:6: In file included from ./variant.h:14: In file included from ./genotype.h:11: In file included from ./individual.h:8: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from globals.cpp:1: In file included from ./gstore.h:15: In file included from ./vardb.h:8: In file included from ./mask.h:8: ./eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from globals.cpp:1: In file included from ./gstore.h:15: ./vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ 5 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-globals.lo -MD -MP -MF .deps/libplinkseq_la-globals.Tpo -c globals.cpp -o libplinkseq_la-globals.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-globals.Tpo .deps/libplinkseq_la-globals.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-variant.lo -MD -MP -MF .deps/libplinkseq_la-variant.Tpo -c -o libplinkseq_la-variant.lo `test -f 'variant.cpp' || echo './'`variant.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-variant.lo -MD -MP -MF .deps/libplinkseq_la-variant.Tpo -c variant.cpp -fno-common -DPIC -o .libs/libplinkseq_la-variant.o In file included from variant.cpp:3: In file included from ./variant.h:14: In file included from ./genotype.h:11: In file included from ./individual.h:8: In file included from ./meta.h:13: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from variant.cpp:3: In file included from ./variant.h:14: In file included from ./genotype.h:11: In file included from ./individual.h:8: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from variant.cpp:6: In file included from ./mask.h:8: ./eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from variant.cpp:9: In file included from ./gstore.h:15: ./vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ 5 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-variant.lo -MD -MP -MF .deps/libplinkseq_la-variant.Tpo -c variant.cpp -o libplinkseq_la-variant.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-variant.Tpo .deps/libplinkseq_la-variant.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-svar.lo -MD -MP -MF .deps/libplinkseq_la-svar.Tpo -c -o libplinkseq_la-svar.lo `test -f 'svar.cpp' || echo './'`svar.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-svar.lo -MD -MP -MF .deps/libplinkseq_la-svar.Tpo -c svar.cpp -fno-common -DPIC -o .libs/libplinkseq_la-svar.o In file included from svar.cpp:2: In file included from ./svar.h:5: In file included from ./meta.h:13: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from svar.cpp:2: In file included from ./svar.h:5: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from svar.cpp:4: In file included from ./mask.h:8: ./eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from svar.cpp:6: ./vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ 5 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-svar.lo -MD -MP -MF .deps/libplinkseq_la-svar.Tpo -c svar.cpp -o libplinkseq_la-svar.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-svar.Tpo .deps/libplinkseq_la-svar.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-genotype.lo -MD -MP -MF .deps/libplinkseq_la-genotype.Tpo -c -o libplinkseq_la-genotype.lo `test -f 'genotype.cpp' || echo './'`genotype.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-genotype.lo -MD -MP -MF .deps/libplinkseq_la-genotype.Tpo -c genotype.cpp -fno-common -DPIC -o .libs/libplinkseq_la-genotype.o In file included from genotype.cpp:2: In file included from ./genotype.h:11: In file included from ./individual.h:8: In file included from ./meta.h:13: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from genotype.cpp:2: In file included from ./genotype.h:11: In file included from ./individual.h:8: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ genotype.cpp:122:12: warning: enumeration value 'GENOTYPE_MODEL_UNSPEC' not handled in switch [-Wswitch] switch ( model ) ^ genotype.cpp:122:12: note: add missing switch cases switch ( model ) ^ genotype.cpp:290:1: warning: non-void function does not return a value in all control paths [-Wreturn-type] } ^ In file included from genotype.cpp:2: In file included from ./genotype.h:11: In file included from ./individual.h:8: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ genotype.cpp:405:10: note: in instantiation of member function 'MetaInformation::set' requested here meta.set( tok , &formats ); ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ ./meta.h:628:5: warning: non-void function does not return a value in all control paths [-Wreturn-type] } ^ 8 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-genotype.lo -MD -MP -MF .deps/libplinkseq_la-genotype.Tpo -c genotype.cpp -o libplinkseq_la-genotype.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-genotype.Tpo .deps/libplinkseq_la-genotype.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-meta.lo -MD -MP -MF .deps/libplinkseq_la-meta.Tpo -c -o libplinkseq_la-meta.lo `test -f 'meta.cpp' || echo './'`meta.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-meta.lo -MD -MP -MF .deps/libplinkseq_la-meta.Tpo -c meta.cpp -fno-common -DPIC -o .libs/libplinkseq_la-meta.o In file included from meta.cpp:1: In file included from ./meta.h:13: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from meta.cpp:1: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ 3 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-meta.lo -MD -MP -MF .deps/libplinkseq_la-meta.Tpo -c meta.cpp -o libplinkseq_la-meta.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-meta.Tpo .deps/libplinkseq_la-meta.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-regions.lo -MD -MP -MF .deps/libplinkseq_la-regions.Tpo -c -o libplinkseq_la-regions.lo `test -f 'regions.cpp' || echo './'`regions.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-regions.lo -MD -MP -MF .deps/libplinkseq_la-regions.Tpo -c regions.cpp -fno-common -DPIC -o .libs/libplinkseq_la-regions.o In file included from regions.cpp:1: In file included from ./regions.h:9: In file included from ./meta.h:13: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from regions.cpp:1: In file included from ./regions.h:9: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ 3 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-regions.lo -MD -MP -MF .deps/libplinkseq_la-regions.Tpo -c regions.cpp -o libplinkseq_la-regions.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-regions.Tpo .deps/libplinkseq_la-regions.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-filemap.lo -MD -MP -MF .deps/libplinkseq_la-filemap.Tpo -c -o libplinkseq_la-filemap.lo `test -f 'filemap.cpp' || echo './'`filemap.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-filemap.lo -MD -MP -MF .deps/libplinkseq_la-filemap.Tpo -c filemap.cpp -fno-common -DPIC -o .libs/libplinkseq_la-filemap.o In file included from filemap.cpp:2: In file included from ./filemap.h:30: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from filemap.cpp:2: In file included from ./filemap.h:32: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from filemap.cpp:7: In file included from ./gstore.h:15: In file included from ./vardb.h:8: In file included from ./mask.h:8: ./eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from filemap.cpp:7: In file included from ./gstore.h:15: ./vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ filemap.cpp:577:1: warning: non-void function does not return a value in all control paths [-Wreturn-type] } ^ filemap.cpp:608:1: warning: non-void function does not return a value in all control paths [-Wreturn-type] } ^ 7 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-filemap.lo -MD -MP -MF .deps/libplinkseq_la-filemap.Tpo -c filemap.cpp -o libplinkseq_la-filemap.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-filemap.Tpo .deps/libplinkseq_la-filemap.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-vcf.lo -MD -MP -MF .deps/libplinkseq_la-vcf.Tpo -c -o libplinkseq_la-vcf.lo `test -f 'vcf.cpp' || echo './'`vcf.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-vcf.lo -MD -MP -MF .deps/libplinkseq_la-vcf.Tpo -c vcf.cpp -fno-common -DPIC -o .libs/libplinkseq_la-vcf.o In file included from vcf.cpp:2: In file included from ./vcf.h:4: In file included from ./vardb.h:4: In file included from ./iterrep.h:4: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from vcf.cpp:2: In file included from ./vcf.h:4: In file included from ./vardb.h:6: In file included from ./variant.h:14: In file included from ./genotype.h:11: In file included from ./individual.h:8: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from vcf.cpp:2: In file included from ./vcf.h:4: In file included from ./vardb.h:8: In file included from ./mask.h:8: ./eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from vcf.cpp:2: In file included from ./vcf.h:4: ./vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ 5 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-vcf.lo -MD -MP -MF .deps/libplinkseq_la-vcf.Tpo -c vcf.cpp -o libplinkseq_la-vcf.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-vcf.Tpo .deps/libplinkseq_la-vcf.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-bcf.lo -MD -MP -MF .deps/libplinkseq_la-bcf.Tpo -c -o libplinkseq_la-bcf.lo `test -f 'bcf.cpp' || echo './'`bcf.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-bcf.lo -MD -MP -MF .deps/libplinkseq_la-bcf.Tpo -c bcf.cpp -fno-common -DPIC -o .libs/libplinkseq_la-bcf.o In file included from bcf.cpp:2: In file included from ./variant.h:14: In file included from ./genotype.h:11: In file included from ./individual.h:8: In file included from ./meta.h:13: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from bcf.cpp:2: In file included from ./variant.h:14: In file included from ./genotype.h:11: In file included from ./individual.h:8: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from bcf.cpp:3: In file included from ./vardb.h:8: In file included from ./mask.h:8: ./eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from bcf.cpp:3: ./vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ bcf.cpp:65:33: warning: equality comparison result unused [-Wunused-comparison] if ( len == 0 ) len == 1; // flag is always 1 bit (0/1) ~~~~^~~~ bcf.cpp:65:33: note: use '=' to turn this equality comparison into an assignment if ( len == 0 ) len == 1; // flag is always 1 bit (0/1) ^~ = bcf.cpp:66:33: warning: equality comparison result unused [-Wunused-comparison] else if ( len == -1 ) len == 0; // 0 is BCF variable length code ~~~~^~~~ bcf.cpp:66:33: note: use '=' to turn this equality comparison into an assignment else if ( len == -1 ) len == 0; // 0 is BCF variable length code ^~ = bcf.cpp:517:22: warning: cast to 'unsigned char *' from smaller integer type 'int32_t' (aka 'int') [-Wint-to-pointer-cast] uint8_t * d = (uint8_t*)len; ^~~~~~~~~~~~~ bcf.cpp:615:1: warning: non-void function does not return a value [-Wreturn-type] } ^ bcf.cpp:794:34: warning: equality comparison result unused [-Wunused-comparison] if ( tmp[j] < 0 ) tmp[j] == 0; ~~~~~~~^~~~ bcf.cpp:794:34: note: use '=' to turn this equality comparison into an assignment if ( tmp[j] < 0 ) tmp[j] == 0; ^~ = bcf.cpp:795:41: warning: equality comparison result unused [-Wunused-comparison] else if ( tmp[j] > 255 ) tmp[j] == 255; ~~~~~~~^~~~~~ bcf.cpp:795:41: note: use '=' to turn this equality comparison into an assignment else if ( tmp[j] > 255 ) tmp[j] == 255; ^~ = 11 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-bcf.lo -MD -MP -MF .deps/libplinkseq_la-bcf.Tpo -c bcf.cpp -o libplinkseq_la-bcf.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-bcf.Tpo .deps/libplinkseq_la-bcf.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-zfstream.lo -MD -MP -MF .deps/libplinkseq_la-zfstream.Tpo -c -o libplinkseq_la-zfstream.lo `test -f 'zfstream.cpp' || echo './'`zfstream.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-zfstream.lo -MD -MP -MF .deps/libplinkseq_la-zfstream.Tpo -c zfstream.cpp -fno-common -DPIC -o .libs/libplinkseq_la-zfstream.o libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-zfstream.lo -MD -MP -MF .deps/libplinkseq_la-zfstream.Tpo -c zfstream.cpp -o libplinkseq_la-zfstream.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-zfstream.Tpo .deps/libplinkseq_la-zfstream.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-sqlwrap.lo -MD -MP -MF .deps/libplinkseq_la-sqlwrap.Tpo -c -o libplinkseq_la-sqlwrap.lo `test -f 'sqlwrap.cpp' || echo './'`sqlwrap.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-sqlwrap.lo -MD -MP -MF .deps/libplinkseq_la-sqlwrap.Tpo -c sqlwrap.cpp -fno-common -DPIC -o .libs/libplinkseq_la-sqlwrap.o In file included from sqlwrap.cpp:2: In file included from ./sqlwrap.h:9: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ 1 warning generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-sqlwrap.lo -MD -MP -MF .deps/libplinkseq_la-sqlwrap.Tpo -c sqlwrap.cpp -o libplinkseq_la-sqlwrap.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-sqlwrap.Tpo .deps/libplinkseq_la-sqlwrap.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-helper.lo -MD -MP -MF .deps/libplinkseq_la-helper.Tpo -c -o libplinkseq_la-helper.lo `test -f 'helper.cpp' || echo './'`helper.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-helper.lo -MD -MP -MF .deps/libplinkseq_la-helper.Tpo -c helper.cpp -fno-common -DPIC -o .libs/libplinkseq_la-helper.o In file included from helper.cpp:9: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from helper.cpp:10: In file included from ./regions.h:9: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from helper.cpp:12: In file included from ./gstore.h:15: In file included from ./vardb.h:8: In file included from ./mask.h:8: ./eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from helper.cpp:12: In file included from ./gstore.h:15: ./vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ helper.cpp:251:1: warning: non-void function does not return a value [-Wreturn-type] } ^ helper.cpp:801:45: warning: adding 'int' to a string does not append to the string [-Wstring-plus-int] plog.warn( "trouble with column value: " + col ); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ helper.cpp:801:45: note: use array indexing to silence this warning plog.warn( "trouble with column value: " + col ); ^ & [ ] helper.cpp:836:1: warning: non-void function does not return a value in all control paths [-Wreturn-type] } ^ helper.cpp:844:1: warning: non-void function does not return a value in all control paths [-Wreturn-type] } ^ 9 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-helper.lo -MD -MP -MF .deps/libplinkseq_la-helper.Tpo -c helper.cpp -o libplinkseq_la-helper.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-helper.Tpo .deps/libplinkseq_la-helper.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-locdb.lo -MD -MP -MF .deps/libplinkseq_la-locdb.Tpo -c -o libplinkseq_la-locdb.lo `test -f 'locdb.cpp' || echo './'`locdb.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-locdb.lo -MD -MP -MF .deps/libplinkseq_la-locdb.Tpo -c locdb.cpp -fno-common -DPIC -o .libs/libplinkseq_la-locdb.o In file included from locdb.cpp:1: In file included from ./locdb.h:4: In file included from ./sqlwrap.h:9: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from locdb.cpp:1: In file included from ./locdb.h:5: In file included from ./regions.h:9: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ locdb.cpp:249:1: warning: non-void function does not return a value [-Wreturn-type] } ^ locdb.cpp:490:1: warning: non-void function does not return a value [-Wreturn-type] } ^ locdb.cpp:563:1: warning: non-void function does not return a value [-Wreturn-type] } ^ locdb.cpp:686:1: warning: non-void function does not return a value [-Wreturn-type] } ^ locdb.cpp:698:1: warning: non-void function does not return a value [-Wreturn-type] } ^ locdb.cpp:2511:1: warning: non-void function does not return a value [-Wreturn-type] } ^ locdb.cpp:2546:1: warning: non-void function does not return a value [-Wreturn-type] } ^ 10 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-locdb.lo -MD -MP -MF .deps/libplinkseq_la-locdb.Tpo -c locdb.cpp -o libplinkseq_la-locdb.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-locdb.Tpo .deps/libplinkseq_la-locdb.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-vardb.lo -MD -MP -MF .deps/libplinkseq_la-vardb.Tpo -c -o libplinkseq_la-vardb.lo `test -f 'vardb.cpp' || echo './'`vardb.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-vardb.lo -MD -MP -MF .deps/libplinkseq_la-vardb.Tpo -c vardb.cpp -fno-common -DPIC -o .libs/libplinkseq_la-vardb.o In file included from vardb.cpp:2: In file included from ./vardb.h:4: In file included from ./iterrep.h:4: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from vardb.cpp:2: In file included from ./vardb.h:6: In file included from ./variant.h:14: In file included from ./genotype.h:11: In file included from ./individual.h:8: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from vardb.cpp:2: In file included from ./vardb.h:8: In file included from ./mask.h:8: ./eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from vardb.cpp:2: ./vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ vardb.cpp:800:1: warning: non-void function does not return a value [-Wreturn-type] } ^ vardb.cpp:814:1: warning: non-void function does not return a value [-Wreturn-type] } ^ 7 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-vardb.lo -MD -MP -MF .deps/libplinkseq_la-vardb.Tpo -c vardb.cpp -o libplinkseq_la-vardb.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-vardb.Tpo .deps/libplinkseq_la-vardb.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-segments.lo -MD -MP -MF .deps/libplinkseq_la-segments.Tpo -c -o libplinkseq_la-segments.lo `test -f 'segments.cpp' || echo './'`segments.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-segments.lo -MD -MP -MF .deps/libplinkseq_la-segments.Tpo -c segments.cpp -fno-common -DPIC -o .libs/libplinkseq_la-segments.o In file included from segments.cpp:2: In file included from ./segments.h:5: In file included from ./gstore.h:6: In file included from ./variant.h:14: In file included from ./genotype.h:11: In file included from ./individual.h:8: In file included from ./meta.h:13: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from segments.cpp:2: In file included from ./segments.h:5: In file included from ./gstore.h:6: In file included from ./variant.h:14: In file included from ./genotype.h:11: In file included from ./individual.h:8: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from segments.cpp:2: In file included from ./segments.h:5: In file included from ./gstore.h:15: In file included from ./vardb.h:8: In file included from ./mask.h:8: ./eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from segments.cpp:2: In file included from ./segments.h:5: In file included from ./gstore.h:15: ./vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ 5 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-segments.lo -MD -MP -MF .deps/libplinkseq_la-segments.Tpo -c segments.cpp -o libplinkseq_la-segments.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-segments.Tpo .deps/libplinkseq_la-segments.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-varfunc.lo -MD -MP -MF .deps/libplinkseq_la-varfunc.Tpo -c -o libplinkseq_la-varfunc.lo `test -f 'varfunc.cpp' || echo './'`varfunc.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-varfunc.lo -MD -MP -MF .deps/libplinkseq_la-varfunc.Tpo -c varfunc.cpp -fno-common -DPIC -o .libs/libplinkseq_la-varfunc.o In file included from varfunc.cpp:1: In file included from ./gstore.h:6: In file included from ./variant.h:14: In file included from ./genotype.h:11: In file included from ./individual.h:8: In file included from ./meta.h:13: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from varfunc.cpp:1: In file included from ./gstore.h:6: In file included from ./variant.h:14: In file included from ./genotype.h:11: In file included from ./individual.h:8: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from varfunc.cpp:1: In file included from ./gstore.h:15: In file included from ./vardb.h:8: In file included from ./mask.h:8: ./eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from varfunc.cpp:1: In file included from ./gstore.h:15: ./vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ 5 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-varfunc.lo -MD -MP -MF .deps/libplinkseq_la-varfunc.Tpo -c varfunc.cpp -o libplinkseq_la-varfunc.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-varfunc.Tpo .deps/libplinkseq_la-varfunc.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-variant.pb.lo -MD -MP -MF .deps/libplinkseq_la-variant.pb.Tpo -c -o libplinkseq_la-variant.pb.lo `test -f 'variant.pb.cpp' || echo './'`variant.pb.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-variant.pb.lo -MD -MP -MF .deps/libplinkseq_la-variant.pb.Tpo -c variant.pb.cpp -fno-common -DPIC -o .libs/libplinkseq_la-variant.pb.o libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-variant.pb.lo -MD -MP -MF .deps/libplinkseq_la-variant.pb.Tpo -c variant.pb.cpp -o libplinkseq_la-variant.pb.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-variant.pb.Tpo .deps/libplinkseq_la-variant.pb.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-refdb.lo -MD -MP -MF .deps/libplinkseq_la-refdb.Tpo -c -o libplinkseq_la-refdb.lo `test -f 'refdb.cpp' || echo './'`refdb.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-refdb.lo -MD -MP -MF .deps/libplinkseq_la-refdb.Tpo -c refdb.cpp -fno-common -DPIC -o .libs/libplinkseq_la-refdb.o In file included from refdb.cpp:2: In file included from ./refdb.h:7: In file included from ./sqlwrap.h:9: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from refdb.cpp:2: In file included from ./refdb.h:8: In file included from ./regions.h:9: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from refdb.cpp:4: In file included from ./gstore.h:15: In file included from ./vardb.h:8: In file included from ./mask.h:8: ./eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from refdb.cpp:4: In file included from ./gstore.h:15: ./vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ refdb.cpp:67:1: warning: non-void function does not return a value in all control paths [-Wreturn-type] } ^ refdb.cpp:201:1: warning: non-void function does not return a value [-Wreturn-type] } ^ refdb.cpp:233:1: warning: non-void function does not return a value [-Wreturn-type] } ^ refdb.cpp:393:1: warning: non-void function does not return a value [-Wreturn-type] } ^ refdb.cpp:420:1: warning: non-void function does not return a value [-Wreturn-type] } ^ 10 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-refdb.lo -MD -MP -MF .deps/libplinkseq_la-refdb.Tpo -c refdb.cpp -o libplinkseq_la-refdb.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-refdb.Tpo .deps/libplinkseq_la-refdb.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-seqdb.lo -MD -MP -MF .deps/libplinkseq_la-seqdb.Tpo -c -o libplinkseq_la-seqdb.lo `test -f 'seqdb.cpp' || echo './'`seqdb.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-seqdb.lo -MD -MP -MF .deps/libplinkseq_la-seqdb.Tpo -c seqdb.cpp -fno-common -DPIC -o .libs/libplinkseq_la-seqdb.o In file included from seqdb.cpp:2: In file included from ./seqdb.h:7: In file included from ./sqlwrap.h:9: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from seqdb.cpp:2: In file included from ./seqdb.h:8: In file included from ./regions.h:9: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from seqdb.cpp:4: In file included from ./gstore.h:15: In file included from ./vardb.h:8: In file included from ./mask.h:8: ./eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from seqdb.cpp:4: In file included from ./gstore.h:15: ./vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ seqdb.cpp:92:1: warning: non-void function does not return a value in all control paths [-Wreturn-type] } ^ seqdb.cpp:119:1: warning: non-void function does not return a value [-Wreturn-type] } ^ seqdb.cpp:174:1: warning: non-void function does not return a value [-Wreturn-type] } ^ seqdb.cpp:183:1: warning: non-void function does not return a value [-Wreturn-type] } ^ 9 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-seqdb.lo -MD -MP -MF .deps/libplinkseq_la-seqdb.Tpo -c seqdb.cpp -o libplinkseq_la-seqdb.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-seqdb.Tpo .deps/libplinkseq_la-seqdb.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-annot.lo -MD -MP -MF .deps/libplinkseq_la-annot.Tpo -c -o libplinkseq_la-annot.lo `test -f 'annot.cpp' || echo './'`annot.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-annot.lo -MD -MP -MF .deps/libplinkseq_la-annot.Tpo -c annot.cpp -fno-common -DPIC -o .libs/libplinkseq_la-annot.o In file included from annot.cpp:2: In file included from ./annot.h:7: In file included from ./regions.h:9: In file included from ./meta.h:13: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from annot.cpp:2: In file included from ./annot.h:7: In file included from ./regions.h:9: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from annot.cpp:4: In file included from ./gstore.h:15: In file included from ./vardb.h:8: In file included from ./mask.h:8: ./eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from annot.cpp:4: In file included from ./gstore.h:15: ./vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ 5 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-annot.lo -MD -MP -MF .deps/libplinkseq_la-annot.Tpo -c annot.cpp -o libplinkseq_la-annot.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-annot.Tpo .deps/libplinkseq_la-annot.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-inddb.lo -MD -MP -MF .deps/libplinkseq_la-inddb.Tpo -c -o libplinkseq_la-inddb.lo `test -f 'inddb.cpp' || echo './'`inddb.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-inddb.lo -MD -MP -MF .deps/libplinkseq_la-inddb.Tpo -c inddb.cpp -fno-common -DPIC -o .libs/libplinkseq_la-inddb.o In file included from inddb.cpp:2: In file included from ./inddb.h:4: In file included from ./sqlwrap.h:9: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from inddb.cpp:2: In file included from ./inddb.h:5: In file included from ./individual.h:8: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from inddb.cpp:4: In file included from ./gstore.h:15: In file included from ./vardb.h:8: In file included from ./mask.h:8: ./eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from inddb.cpp:4: In file included from ./gstore.h:15: ./vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ inddb.cpp:239:1: warning: non-void function does not return a value [-Wreturn-type] } ^ inddb.cpp:246:1: warning: non-void function does not return a value [-Wreturn-type] } ^ 7 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-inddb.lo -MD -MP -MF .deps/libplinkseq_la-inddb.Tpo -c inddb.cpp -o libplinkseq_la-inddb.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-inddb.Tpo .deps/libplinkseq_la-inddb.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-mask.lo -MD -MP -MF .deps/libplinkseq_la-mask.Tpo -c -o libplinkseq_la-mask.lo `test -f 'mask.cpp' || echo './'`mask.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-mask.lo -MD -MP -MF .deps/libplinkseq_la-mask.Tpo -c mask.cpp -fno-common -DPIC -o .libs/libplinkseq_la-mask.o In file included from mask.cpp:2: In file included from ./mask.h:6: In file included from ./regions.h:9: In file included from ./meta.h:13: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from mask.cpp:2: In file included from ./mask.h:6: In file included from ./regions.h:9: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from mask.cpp:2: In file included from ./mask.h:8: ./eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from mask.cpp:7: ./vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ mask.cpp:921:13: warning: equality comparison result unused [-Wunused-comparison] t[i+1] == "not"; ~~~~~~~^~~~~~~~ mask.cpp:921:13: note: use '=' to turn this equality comparison into an assignment t[i+1] == "not"; ^~ = mask.cpp:2762:1: warning: non-void function does not return a value [-Wreturn-type] } ^ mask.cpp:2767:1: warning: non-void function does not return a value [-Wreturn-type] } ^ mask.cpp:2772:1: warning: non-void function does not return a value [-Wreturn-type] } ^ mask.cpp:2777:1: warning: non-void function does not return a value [-Wreturn-type] } ^ mask.cpp:2782:1: warning: non-void function does not return a value [-Wreturn-type] } ^ mask.cpp:2787:1: warning: non-void function does not return a value [-Wreturn-type] } ^ mask.cpp:2792:1: warning: non-void function does not return a value [-Wreturn-type] } ^ mask.cpp:2797:1: warning: non-void function does not return a value [-Wreturn-type] } ^ mask.cpp:2804:1: warning: non-void function does not return a value [-Wreturn-type] } ^ mask.cpp:2809:1: warning: non-void function does not return a value [-Wreturn-type] } ^ mask.cpp:2814:1: warning: non-void function does not return a value [-Wreturn-type] } ^ mask.cpp:2819:1: warning: non-void function does not return a value [-Wreturn-type] } ^ mask.cpp:2824:1: warning: non-void function does not return a value [-Wreturn-type] } ^ mask.cpp:2829:1: warning: non-void function does not return a value [-Wreturn-type] } ^ mask.cpp:2834:1: warning: non-void function does not return a value [-Wreturn-type] } ^ mask.cpp:2839:1: warning: non-void function does not return a value [-Wreturn-type] } ^ mask.cpp:3235:1: warning: non-void function does not return a value [-Wreturn-type] } ^ mask.cpp:3240:1: warning: non-void function does not return a value [-Wreturn-type] } ^ mask.cpp:3245:1: warning: non-void function does not return a value [-Wreturn-type] } ^ mask.cpp:3250:1: warning: non-void function does not return a value [-Wreturn-type] } ^ mask.cpp:3255:1: warning: non-void function does not return a value [-Wreturn-type] } ^ mask.cpp:3260:1: warning: non-void function does not return a value [-Wreturn-type] } ^ mask.cpp:3265:1: warning: non-void function does not return a value [-Wreturn-type] } ^ mask.cpp:3270:1: warning: non-void function does not return a value [-Wreturn-type] } ^ mask.cpp:3277:1: warning: non-void function does not return a value [-Wreturn-type] } ^ mask.cpp:3282:1: warning: non-void function does not return a value [-Wreturn-type] } ^ mask.cpp:3287:1: warning: non-void function does not return a value [-Wreturn-type] } ^ mask.cpp:3292:1: warning: non-void function does not return a value [-Wreturn-type] } ^ mask.cpp:3297:1: warning: non-void function does not return a value [-Wreturn-type] } ^ mask.cpp:3302:1: warning: non-void function does not return a value [-Wreturn-type] } ^ mask.cpp:3307:1: warning: non-void function does not return a value [-Wreturn-type] } ^ mask.cpp:3312:1: warning: non-void function does not return a value [-Wreturn-type] } ^ 38 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-mask.lo -MD -MP -MF .deps/libplinkseq_la-mask.Tpo -c mask.cpp -o libplinkseq_la-mask.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-mask.Tpo .deps/libplinkseq_la-mask.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-reffuncs.lo -MD -MP -MF .deps/libplinkseq_la-reffuncs.Tpo -c -o libplinkseq_la-reffuncs.lo `test -f 'reffuncs.cpp' || echo './'`reffuncs.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-reffuncs.lo -MD -MP -MF .deps/libplinkseq_la-reffuncs.Tpo -c reffuncs.cpp -fno-common -DPIC -o .libs/libplinkseq_la-reffuncs.o In file included from reffuncs.cpp:2: In file included from ./gstore.h:6: In file included from ./variant.h:14: In file included from ./genotype.h:11: In file included from ./individual.h:8: In file included from ./meta.h:13: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from reffuncs.cpp:2: In file included from ./gstore.h:6: In file included from ./variant.h:14: In file included from ./genotype.h:11: In file included from ./individual.h:8: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from reffuncs.cpp:2: In file included from ./gstore.h:15: In file included from ./vardb.h:8: In file included from ./mask.h:8: ./eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from reffuncs.cpp:2: In file included from ./gstore.h:15: ./vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ 5 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-reffuncs.lo -MD -MP -MF .deps/libplinkseq_la-reffuncs.Tpo -c reffuncs.cpp -o libplinkseq_la-reffuncs.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-reffuncs.Tpo .deps/libplinkseq_la-reffuncs.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-vgroup.lo -MD -MP -MF .deps/libplinkseq_la-vgroup.Tpo -c -o libplinkseq_la-vgroup.lo `test -f 'vgroup.cpp' || echo './'`vgroup.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-vgroup.lo -MD -MP -MF .deps/libplinkseq_la-vgroup.Tpo -c vgroup.cpp -fno-common -DPIC -o .libs/libplinkseq_la-vgroup.o In file included from vgroup.cpp:1: In file included from ./vgroup.h:4: In file included from ./variant.h:14: In file included from ./genotype.h:11: In file included from ./individual.h:8: In file included from ./meta.h:13: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from vgroup.cpp:1: In file included from ./vgroup.h:4: In file included from ./variant.h:14: In file included from ./genotype.h:11: In file included from ./individual.h:8: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from vgroup.cpp:1: In file included from ./vgroup.h:6: In file included from ./mask.h:8: ./eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from vgroup.cpp:2: In file included from ./gstore.h:15: ./vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ 5 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-vgroup.lo -MD -MP -MF .deps/libplinkseq_la-vgroup.Tpo -c vgroup.cpp -o libplinkseq_la-vgroup.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-vgroup.Tpo .deps/libplinkseq_la-vgroup.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-allele.lo -MD -MP -MF .deps/libplinkseq_la-allele.Tpo -c -o libplinkseq_la-allele.lo `test -f 'allele.cpp' || echo './'`allele.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-allele.lo -MD -MP -MF .deps/libplinkseq_la-allele.Tpo -c allele.cpp -fno-common -DPIC -o .libs/libplinkseq_la-allele.o In file included from allele.cpp:1: In file included from ./allele.h:6: In file included from ./meta.h:13: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from allele.cpp:1: In file included from ./allele.h:6: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ 3 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-allele.lo -MD -MP -MF .deps/libplinkseq_la-allele.Tpo -c allele.cpp -o libplinkseq_la-allele.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-allele.Tpo .deps/libplinkseq_la-allele.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-individual.lo -MD -MP -MF .deps/libplinkseq_la-individual.Tpo -c -o libplinkseq_la-individual.lo `test -f 'individual.cpp' || echo './'`individual.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-individual.lo -MD -MP -MF .deps/libplinkseq_la-individual.Tpo -c individual.cpp -fno-common -DPIC -o .libs/libplinkseq_la-individual.o In file included from individual.cpp:1: In file included from ./individual.h:8: In file included from ./meta.h:13: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from individual.cpp:1: In file included from ./individual.h:8: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ 3 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-individual.lo -MD -MP -MF .deps/libplinkseq_la-individual.Tpo -c individual.cpp -o libplinkseq_la-individual.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-individual.Tpo .deps/libplinkseq_la-individual.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-indmap.lo -MD -MP -MF .deps/libplinkseq_la-indmap.Tpo -c -o libplinkseq_la-indmap.lo `test -f 'indmap.cpp' || echo './'`indmap.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-indmap.lo -MD -MP -MF .deps/libplinkseq_la-indmap.Tpo -c indmap.cpp -fno-common -DPIC -o .libs/libplinkseq_la-indmap.o In file included from indmap.cpp:2: In file included from ./indmap.h:9: In file included from ./meta.h:13: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from indmap.cpp:2: In file included from ./indmap.h:9: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from indmap.cpp:4: In file included from ./vardb.h:8: In file included from ./mask.h:8: ./eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from indmap.cpp:4: ./vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ 5 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-indmap.lo -MD -MP -MF .deps/libplinkseq_la-indmap.Tpo -c indmap.cpp -o libplinkseq_la-indmap.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-indmap.Tpo .deps/libplinkseq_la-indmap.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-phmap.lo -MD -MP -MF .deps/libplinkseq_la-phmap.Tpo -c -o libplinkseq_la-phmap.lo `test -f 'phmap.cpp' || echo './'`phmap.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-phmap.lo -MD -MP -MF .deps/libplinkseq_la-phmap.Tpo -c phmap.cpp -fno-common -DPIC -o .libs/libplinkseq_la-phmap.o In file included from phmap.cpp:2: In file included from ./phmap.h:9: In file included from ./individual.h:8: In file included from ./meta.h:13: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from phmap.cpp:2: In file included from ./phmap.h:9: In file included from ./individual.h:8: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from phmap.cpp:6: In file included from ./gstore.h:15: In file included from ./vardb.h:8: In file included from ./mask.h:8: ./eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from phmap.cpp:6: In file included from ./gstore.h:15: ./vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ 5 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-phmap.lo -MD -MP -MF .deps/libplinkseq_la-phmap.Tpo -c phmap.cpp -o libplinkseq_la-phmap.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-phmap.Tpo .deps/libplinkseq_la-phmap.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-permute.lo -MD -MP -MF .deps/libplinkseq_la-permute.Tpo -c -o libplinkseq_la-permute.lo `test -f 'permute.cpp' || echo './'`permute.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-permute.lo -MD -MP -MF .deps/libplinkseq_la-permute.Tpo -c permute.cpp -fno-common -DPIC -o .libs/libplinkseq_la-permute.o In file included from permute.cpp:1: In file included from ./permute.h:5: In file included from ./statistics.h:4: In file included from ./matrix.h:5: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from permute.cpp:3: In file included from ./indmap.h:9: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ 3 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-permute.lo -MD -MP -MF .deps/libplinkseq_la-permute.Tpo -c permute.cpp -o libplinkseq_la-permute.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-permute.Tpo .deps/libplinkseq_la-permute.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-crandom.lo -MD -MP -MF .deps/libplinkseq_la-crandom.Tpo -c -o libplinkseq_la-crandom.lo `test -f 'crandom.cpp' || echo './'`crandom.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-crandom.lo -MD -MP -MF .deps/libplinkseq_la-crandom.Tpo -c crandom.cpp -fno-common -DPIC -o .libs/libplinkseq_la-crandom.o libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-crandom.lo -MD -MP -MF .deps/libplinkseq_la-crandom.Tpo -c crandom.cpp -o libplinkseq_la-crandom.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-crandom.Tpo .deps/libplinkseq_la-crandom.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-defs.lo -MD -MP -MF .deps/libplinkseq_la-defs.Tpo -c -o libplinkseq_la-defs.lo `test -f 'defs.cpp' || echo './'`defs.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-defs.lo -MD -MP -MF .deps/libplinkseq_la-defs.Tpo -c defs.cpp -fno-common -DPIC -o .libs/libplinkseq_la-defs.o In file included from defs.cpp:3: In file included from ./meta.h:13: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from defs.cpp:3: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ 3 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-defs.lo -MD -MP -MF .deps/libplinkseq_la-defs.Tpo -c defs.cpp -o libplinkseq_la-defs.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-defs.Tpo .deps/libplinkseq_la-defs.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-em.lo -MD -MP -MF .deps/libplinkseq_la-em.Tpo -c -o libplinkseq_la-em.lo `test -f 'em.cpp' || echo './'`em.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-em.lo -MD -MP -MF .deps/libplinkseq_la-em.Tpo -c em.cpp -fno-common -DPIC -o .libs/libplinkseq_la-em.o In file included from em.cpp:2: In file included from ./em.h:5: In file included from ./meta.h:13: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from em.cpp:2: In file included from ./em.h:5: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ em.cpp:185:1: warning: non-void function does not return a value [-Wreturn-type] } ^ 4 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-em.lo -MD -MP -MF .deps/libplinkseq_la-em.Tpo -c em.cpp -o libplinkseq_la-em.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-em.Tpo .deps/libplinkseq_la-em.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-bed.lo -MD -MP -MF .deps/libplinkseq_la-bed.Tpo -c -o libplinkseq_la-bed.lo `test -f 'bed.cpp' || echo './'`bed.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-bed.lo -MD -MP -MF .deps/libplinkseq_la-bed.Tpo -c bed.cpp -fno-common -DPIC -o .libs/libplinkseq_la-bed.o In file included from bed.cpp:3: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from bed.cpp:4: In file included from ./vardb.h:6: In file included from ./variant.h:14: In file included from ./genotype.h:11: In file included from ./individual.h:8: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from bed.cpp:4: In file included from ./vardb.h:8: In file included from ./mask.h:8: ./eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from bed.cpp:4: ./vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ 5 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-bed.lo -MD -MP -MF .deps/libplinkseq_la-bed.Tpo -c bed.cpp -o libplinkseq_la-bed.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-bed.Tpo .deps/libplinkseq_la-bed.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-varmeta.lo -MD -MP -MF .deps/libplinkseq_la-varmeta.Tpo -c -o libplinkseq_la-varmeta.lo `test -f 'varmeta.cpp' || echo './'`varmeta.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-varmeta.lo -MD -MP -MF .deps/libplinkseq_la-varmeta.Tpo -c varmeta.cpp -fno-common -DPIC -o .libs/libplinkseq_la-varmeta.o In file included from varmeta.cpp:1: In file included from ./vardb.h:4: In file included from ./iterrep.h:4: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from varmeta.cpp:1: In file included from ./vardb.h:6: In file included from ./variant.h:14: In file included from ./genotype.h:11: In file included from ./individual.h:8: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from varmeta.cpp:1: In file included from ./vardb.h:8: In file included from ./mask.h:8: ./eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from varmeta.cpp:1: ./vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ varmeta.cpp:183:1: warning: non-void function does not return a value [-Wreturn-type] } ^ 6 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-varmeta.lo -MD -MP -MF .deps/libplinkseq_la-varmeta.Tpo -c varmeta.cpp -o libplinkseq_la-varmeta.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-varmeta.Tpo .deps/libplinkseq_la-varmeta.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-pp.lo -MD -MP -MF .deps/libplinkseq_la-pp.Tpo -c -o libplinkseq_la-pp.lo `test -f 'pp.cpp' || echo './'`pp.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-pp.lo -MD -MP -MF .deps/libplinkseq_la-pp.Tpo -c pp.cpp -fno-common -DPIC -o .libs/libplinkseq_la-pp.o In file included from pp.cpp:1: In file included from ./pp.h:10: In file included from ./sqlwrap.h:9: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from pp.cpp:4: In file included from ./filemap.h:32: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from pp.cpp:8: In file included from ./gstore.h:15: In file included from ./vardb.h:8: In file included from ./mask.h:8: ./eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from pp.cpp:8: In file included from ./gstore.h:15: ./vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ 5 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-pp.lo -MD -MP -MF .deps/libplinkseq_la-pp.Tpo -c pp.cpp -o libplinkseq_la-pp.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-pp.Tpo .deps/libplinkseq_la-pp.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-pp.pb.lo -MD -MP -MF .deps/libplinkseq_la-pp.pb.Tpo -c -o libplinkseq_la-pp.pb.lo `test -f 'pp.pb.cpp' || echo './'`pp.pb.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-pp.pb.lo -MD -MP -MF .deps/libplinkseq_la-pp.pb.Tpo -c pp.pb.cpp -fno-common -DPIC -o .libs/libplinkseq_la-pp.pb.o libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-pp.pb.lo -MD -MP -MF .deps/libplinkseq_la-pp.pb.Tpo -c pp.pb.cpp -o libplinkseq_la-pp.pb.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-pp.pb.Tpo .deps/libplinkseq_la-pp.pb.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-statistics.lo -MD -MP -MF .deps/libplinkseq_la-statistics.Tpo -c -o libplinkseq_la-statistics.lo `test -f 'statistics.cpp' || echo './'`statistics.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-statistics.lo -MD -MP -MF .deps/libplinkseq_la-statistics.Tpo -c statistics.cpp -fno-common -DPIC -o .libs/libplinkseq_la-statistics.o In file included from statistics.cpp:1: In file included from ./statistics.h:4: In file included from ./matrix.h:5: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ 1 warning generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-statistics.lo -MD -MP -MF .deps/libplinkseq_la-statistics.Tpo -c statistics.cpp -o libplinkseq_la-statistics.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-statistics.Tpo .deps/libplinkseq_la-statistics.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-dcdflib.lo -MD -MP -MF .deps/libplinkseq_la-dcdflib.Tpo -c -o libplinkseq_la-dcdflib.lo `test -f 'dcdflib.cpp' || echo './'`dcdflib.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-dcdflib.lo -MD -MP -MF .deps/libplinkseq_la-dcdflib.Tpo -c dcdflib.cpp -fno-common -DPIC -o .libs/libplinkseq_la-dcdflib.o In file included from dcdflib.cpp:6: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ 1 warning generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-dcdflib.lo -MD -MP -MF .deps/libplinkseq_la-dcdflib.Tpo -c dcdflib.cpp -o libplinkseq_la-dcdflib.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-dcdflib.Tpo .deps/libplinkseq_la-dcdflib.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-bgzf.lo -MD -MP -MF .deps/libplinkseq_la-bgzf.Tpo -c -o libplinkseq_la-bgzf.lo `test -f 'bgzf.cpp' || echo './'`bgzf.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-bgzf.lo -MD -MP -MF .deps/libplinkseq_la-bgzf.Tpo -c bgzf.cpp -fno-common -DPIC -o .libs/libplinkseq_la-bgzf.o bgzf.cpp:235:15: warning: implicit conversion from 'const int' to 'bgzf_byte_t' (aka 'signed char') changes value from 139 to -117 [-Wconstant-conversion] buffer[1] = GZIP_ID2; ~ ^~~~~~~~ bgzf.cpp:243:15: warning: implicit conversion from 'const int' to 'bgzf_byte_t' (aka 'signed char') changes value from 255 to -1 [-Wconstant-conversion] buffer[9] = OS_UNKNOWN; ~ ^~~~~~~~~~ 2 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-bgzf.lo -MD -MP -MF .deps/libplinkseq_la-bgzf.Tpo -c bgzf.cpp -o libplinkseq_la-bgzf.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-bgzf.Tpo .deps/libplinkseq_la-bgzf.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-fisher.lo -MD -MP -MF .deps/libplinkseq_la-fisher.Tpo -c -o libplinkseq_la-fisher.lo `test -f 'fisher.cpp' || echo './'`fisher.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-fisher.lo -MD -MP -MF .deps/libplinkseq_la-fisher.Tpo -c fisher.cpp -fno-common -DPIC -o .libs/libplinkseq_la-fisher.o In file included from fisher.cpp:4: In file included from ./fisher.h:25: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ 1 warning generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-fisher.lo -MD -MP -MF .deps/libplinkseq_la-fisher.Tpo -c fisher.cpp -o libplinkseq_la-fisher.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-fisher.Tpo .deps/libplinkseq_la-fisher.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-glm.lo -MD -MP -MF .deps/libplinkseq_la-glm.Tpo -c -o libplinkseq_la-glm.lo `test -f 'glm.cpp' || echo './'`glm.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-glm.lo -MD -MP -MF .deps/libplinkseq_la-glm.Tpo -c glm.cpp -fno-common -DPIC -o .libs/libplinkseq_la-glm.o In file included from glm.cpp:2: In file included from ./glm.h:4: In file included from ./matrix.h:5: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from glm.cpp:2: ./glm.h:44:45: warning: non-void function does not return a value [-Wreturn-type] bool valid(const bool b) { all_valid = b; }; ^ glm.cpp:371:1: warning: non-void function does not return a value in all control paths [-Wreturn-type] } ^ 3 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-glm.lo -MD -MP -MF .deps/libplinkseq_la-glm.Tpo -c glm.cpp -o libplinkseq_la-glm.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-glm.Tpo .deps/libplinkseq_la-glm.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-matrix.lo -MD -MP -MF .deps/libplinkseq_la-matrix.Tpo -c -o libplinkseq_la-matrix.lo `test -f 'matrix.cpp' || echo './'`matrix.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-matrix.lo -MD -MP -MF .deps/libplinkseq_la-matrix.Tpo -c matrix.cpp -fno-common -DPIC -o .libs/libplinkseq_la-matrix.o In file included from matrix.cpp:1: In file included from ./matrix.h:5: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ 1 warning generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-matrix.lo -MD -MP -MF .deps/libplinkseq_la-matrix.Tpo -c matrix.cpp -o libplinkseq_la-matrix.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-matrix.Tpo .deps/libplinkseq_la-matrix.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-iterate.lo -MD -MP -MF .deps/libplinkseq_la-iterate.Tpo -c -o libplinkseq_la-iterate.lo `test -f 'iterate.cpp' || echo './'`iterate.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-iterate.lo -MD -MP -MF .deps/libplinkseq_la-iterate.Tpo -c iterate.cpp -fno-common -DPIC -o .libs/libplinkseq_la-iterate.o In file included from iterate.cpp:2: In file included from ./vardb.h:4: In file included from ./iterrep.h:4: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from iterate.cpp:2: In file included from ./vardb.h:6: In file included from ./variant.h:14: In file included from ./genotype.h:11: In file included from ./individual.h:8: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from iterate.cpp:2: In file included from ./vardb.h:8: In file included from ./mask.h:8: ./eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from iterate.cpp:2: ./vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ 5 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-iterate.lo -MD -MP -MF .deps/libplinkseq_la-iterate.Tpo -c iterate.cpp -o libplinkseq_la-iterate.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-iterate.Tpo .deps/libplinkseq_la-iterate.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-vcfiterate.lo -MD -MP -MF .deps/libplinkseq_la-vcfiterate.Tpo -c -o libplinkseq_la-vcfiterate.lo `test -f 'vcfiterate.cpp' || echo './'`vcfiterate.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-vcfiterate.lo -MD -MP -MF .deps/libplinkseq_la-vcfiterate.Tpo -c vcfiterate.cpp -fno-common -DPIC -o .libs/libplinkseq_la-vcfiterate.o In file included from vcfiterate.cpp:1: In file included from ./vardb.h:4: In file included from ./iterrep.h:4: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from vcfiterate.cpp:1: In file included from ./vardb.h:6: In file included from ./variant.h:14: In file included from ./genotype.h:11: In file included from ./individual.h:8: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from vcfiterate.cpp:1: In file included from ./vardb.h:8: In file included from ./mask.h:8: ./eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from vcfiterate.cpp:1: ./vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ vcfiterate.cpp:68:1: warning: non-void function does not return a value [-Wreturn-type] } ^ 6 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-vcfiterate.lo -MD -MP -MF .deps/libplinkseq_la-vcfiterate.Tpo -c vcfiterate.cpp -o libplinkseq_la-vcfiterate.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-vcfiterate.Tpo .deps/libplinkseq_la-vcfiterate.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-netdb.lo -MD -MP -MF .deps/libplinkseq_la-netdb.Tpo -c -o libplinkseq_la-netdb.lo `test -f 'netdb.cpp' || echo './'`netdb.cpp libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-netdb.lo -MD -MP -MF .deps/libplinkseq_la-netdb.Tpo -c netdb.cpp -fno-common -DPIC -o .libs/libplinkseq_la-netdb.o In file included from netdb.cpp:1: In file included from ./netdb.h:10: In file included from ./sqlwrap.h:9: ./helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from netdb.cpp:1: In file included from ./netdb.h:11: In file included from ./regions.h:9: ./meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ./meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ./meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ netdb.cpp:87:1: warning: non-void function does not return a value [-Wreturn-type] } ^ 4 warnings generated. libtool: compile: clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-netdb.lo -MD -MP -MF .deps/libplinkseq_la-netdb.Tpo -c netdb.cpp -o libplinkseq_la-netdb.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-netdb.Tpo .deps/libplinkseq_la-netdb.Plo /opt/pkg/bin/mksh ../libtool --tag=CC --mode=compile clang -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-sqlite3.lo -MD -MP -MF .deps/libplinkseq_la-sqlite3.Tpo -c -o libplinkseq_la-sqlite3.lo `test -f 'sqlite3.c' || echo './'`sqlite3.c libtool: compile: clang -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-sqlite3.lo -MD -MP -MF .deps/libplinkseq_la-sqlite3.Tpo -c sqlite3.c -fno-common -DPIC -o .libs/libplinkseq_la-sqlite3.o libtool: compile: clang -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-sqlite3.lo -MD -MP -MF .deps/libplinkseq_la-sqlite3.Tpo -c sqlite3.c -o libplinkseq_la-sqlite3.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-sqlite3.Tpo .deps/libplinkseq_la-sqlite3.Plo /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=link clang++ -pipe -Os -I/opt/pkg/include -L/opt/pkg/lib -o libplinkseq.la -rpath /opt/pkg/lib libplinkseq_la-eval.lo libplinkseq_la-token.lo libplinkseq_la-vcfz.lo libplinkseq_la-gstore.lo libplinkseq_la-globals.lo libplinkseq_la-variant.lo libplinkseq_la-svar.lo libplinkseq_la-genotype.lo libplinkseq_la-meta.lo libplinkseq_la-regions.lo libplinkseq_la-filemap.lo libplinkseq_la-vcf.lo libplinkseq_la-bcf.lo libplinkseq_la-zfstream.lo libplinkseq_la-sqlwrap.lo libplinkseq_la-helper.lo libplinkseq_la-locdb.lo libplinkseq_la-vardb.lo libplinkseq_la-segments.lo libplinkseq_la-varfunc.lo libplinkseq_la-variant.pb.lo libplinkseq_la-refdb.lo libplinkseq_la-seqdb.lo libplinkseq_la-annot.lo libplinkseq_la-inddb.lo libplinkseq_la-mask.lo libplinkseq_la-reffuncs.lo libplinkseq_la-vgroup.lo libplinkseq_la-allele.lo libplinkseq_la-individual.lo libplinkseq_la-indmap.lo libplinkseq_la-phmap.lo libplinkseq_la-permute.lo libplinkseq_la-crandom.lo libplinkseq_la-defs.lo libplinkseq_la-em.lo libplinkseq_la-bed.lo libplinkseq_la-varmeta.lo libplinkseq_la-pp.lo libplinkseq_la-pp.pb.lo libplinkseq_la-statistics.lo libplinkseq_la-dcdflib.lo libplinkseq_la-bgzf.lo libplinkseq_la-fisher.lo libplinkseq_la-glm.lo libplinkseq_la-matrix.lo libplinkseq_la-iterate.lo libplinkseq_la-vcfiterate.lo libplinkseq_la-netdb.lo libplinkseq_la-sqlite3.lo -lz -lprotobuf libtool: link: clang++ -dynamiclib -Wl,-undefined -Wl,dynamic_lookup -o .libs/libplinkseq.0.dylib .libs/libplinkseq_la-eval.o .libs/libplinkseq_la-token.o .libs/libplinkseq_la-vcfz.o .libs/libplinkseq_la-gstore.o .libs/libplinkseq_la-globals.o .libs/libplinkseq_la-variant.o .libs/libplinkseq_la-svar.o .libs/libplinkseq_la-genotype.o .libs/libplinkseq_la-meta.o .libs/libplinkseq_la-regions.o .libs/libplinkseq_la-filemap.o .libs/libplinkseq_la-vcf.o .libs/libplinkseq_la-bcf.o .libs/libplinkseq_la-zfstream.o .libs/libplinkseq_la-sqlwrap.o .libs/libplinkseq_la-helper.o .libs/libplinkseq_la-locdb.o .libs/libplinkseq_la-vardb.o .libs/libplinkseq_la-segments.o .libs/libplinkseq_la-varfunc.o .libs/libplinkseq_la-variant.pb.o .libs/libplinkseq_la-refdb.o .libs/libplinkseq_la-seqdb.o .libs/libplinkseq_la-annot.o .libs/libplinkseq_la-inddb.o .libs/libplinkseq_la-mask.o .libs/libplinkseq_la-reffuncs.o .libs/libplinkseq_la-vgroup.o .libs/libplinkseq_la-allele.o .libs/libplinkseq_la-individual.o .libs/libplinkseq_la-indmap.o .libs/libplinkseq_la-phmap.o .libs/libplinkseq_la-permute.o .libs/libplinkseq_la-crandom.o .libs/libplinkseq_la-defs.o .libs/libplinkseq_la-em.o .libs/libplinkseq_la-bed.o .libs/libplinkseq_la-varmeta.o .libs/libplinkseq_la-pp.o .libs/libplinkseq_la-pp.pb.o .libs/libplinkseq_la-statistics.o .libs/libplinkseq_la-dcdflib.o .libs/libplinkseq_la-bgzf.o .libs/libplinkseq_la-fisher.o .libs/libplinkseq_la-glm.o .libs/libplinkseq_la-matrix.o .libs/libplinkseq_la-iterate.o .libs/libplinkseq_la-vcfiterate.o .libs/libplinkseq_la-netdb.o .libs/libplinkseq_la-sqlite3.o -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib /Users/pbulk/build/biology/plinkseq/work/.buildlink/lib/libz.dylib -lprotobuf -Os -install_name /opt/pkg/lib/libplinkseq.0.dylib -compatibility_version 1 -current_version 1.0 -Wl,-single_module libtool: link: (cd ".libs" && rm -f "libplinkseq.dylib" && ln -s "libplinkseq.0.dylib" "libplinkseq.dylib") libtool: link: ar cr .libs/libplinkseq.a libplinkseq_la-eval.o libplinkseq_la-token.o libplinkseq_la-vcfz.o libplinkseq_la-gstore.o libplinkseq_la-globals.o libplinkseq_la-variant.o libplinkseq_la-svar.o libplinkseq_la-genotype.o libplinkseq_la-meta.o libplinkseq_la-regions.o libplinkseq_la-filemap.o libplinkseq_la-vcf.o libplinkseq_la-bcf.o libplinkseq_la-zfstream.o libplinkseq_la-sqlwrap.o libplinkseq_la-helper.o libplinkseq_la-locdb.o libplinkseq_la-vardb.o libplinkseq_la-segments.o libplinkseq_la-varfunc.o libplinkseq_la-variant.pb.o libplinkseq_la-refdb.o libplinkseq_la-seqdb.o libplinkseq_la-annot.o libplinkseq_la-inddb.o libplinkseq_la-mask.o libplinkseq_la-reffuncs.o libplinkseq_la-vgroup.o libplinkseq_la-allele.o libplinkseq_la-individual.o libplinkseq_la-indmap.o libplinkseq_la-phmap.o libplinkseq_la-permute.o libplinkseq_la-crandom.o libplinkseq_la-defs.o libplinkseq_la-em.o libplinkseq_la-bed.o libplinkseq_la-varmeta.o libplinkseq_la-pp.o libplinkseq_la-pp.pb.o libplinkseq_la-statistics.o libplinkseq_la-dcdflib.o libplinkseq_la-bgzf.o libplinkseq_la-fisher.o libplinkseq_la-glm.o libplinkseq_la-matrix.o libplinkseq_la-iterate.o libplinkseq_la-vcfiterate.o libplinkseq_la-netdb.o libplinkseq_la-sqlite3.o libtool: link: ranlib .libs/libplinkseq.a libtool: link: ( cd ".libs" && rm -f "libplinkseq.la" && ln -s "../libplinkseq.la" "libplinkseq.la" ) Making all in client clang++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-util.o -MD -MP -MF .deps/pseq-util.Tpo -c -o pseq-util.o `test -f 'util.cpp' || echo './'`util.cpp In file included from util.cpp:2: ../lib/helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from util.cpp:3: In file included from ./util.h:4: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:32: ../lib/meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ../lib/meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from util.cpp:3: In file included from ./util.h:4: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: In file included from ../lib/vardb.h:8: In file included from ../lib/mask.h:8: ../lib/eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from util.cpp:3: In file included from ./util.h:4: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: ../lib/vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ In file included from util.cpp:3: In file included from ./util.h:4: In file included from ../lib/pseq.h:34: ../lib/glm.h:44:45: warning: non-void function does not return a value [-Wreturn-type] bool valid(const bool b) { all_valid = b; }; ^ 6 warnings generated. mv -f .deps/pseq-util.Tpo .deps/pseq-util.Po clang++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-ibs.o -MD -MP -MF .deps/pseq-ibs.Tpo -c -o pseq-ibs.o `test -f 'ibs.cpp' || echo './'`ibs.cpp In file included from ibs.cpp:1: In file included from ./ibs.h:7: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:30: ../lib/helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from ibs.cpp:1: In file included from ./ibs.h:7: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:32: ../lib/meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ../lib/meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from ibs.cpp:1: In file included from ./ibs.h:7: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: In file included from ../lib/vardb.h:8: In file included from ../lib/mask.h:8: ../lib/eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from ibs.cpp:1: In file included from ./ibs.h:7: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: ../lib/vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ In file included from ibs.cpp:1: In file included from ./ibs.h:7: In file included from ../lib/pseq.h:34: ../lib/glm.h:44:45: warning: non-void function does not return a value [-Wreturn-type] bool valid(const bool b) { all_valid = b; }; ^ ibs.cpp:53:1: warning: non-void function does not return a value [-Wreturn-type] } ^ 7 warnings generated. mv -f .deps/pseq-ibs.Tpo .deps/pseq-ibs.Po clang++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-main.o -MD -MP -MF .deps/pseq-main.Tpo -c -o pseq-main.o `test -f 'main.cpp' || echo './'`main.cpp In file included from main.cpp:5: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:30: ../lib/helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from main.cpp:5: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:32: ../lib/meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ../lib/meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from main.cpp:5: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: In file included from ../lib/vardb.h:8: In file included from ../lib/mask.h:8: ../lib/eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from main.cpp:5: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: ../lib/vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ In file included from main.cpp:5: In file included from ../lib/pseq.h:34: ../lib/glm.h:44:45: warning: non-void function does not return a value [-Wreturn-type] bool valid(const bool b) { all_valid = b; }; ^ 6 warnings generated. mv -f .deps/pseq-main.Tpo .deps/pseq-main.Po clang++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-func.o -MD -MP -MF .deps/pseq-func.Tpo -c -o pseq-func.o `test -f 'func.cpp' || echo './'`func.cpp In file included from func.cpp:2: In file included from ./func.h:4: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:30: ../lib/helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from func.cpp:2: In file included from ./func.h:4: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:32: ../lib/meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ../lib/meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from func.cpp:2: In file included from ./func.h:4: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: In file included from ../lib/vardb.h:8: In file included from ../lib/mask.h:8: ../lib/eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from func.cpp:2: In file included from ./func.h:4: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: ../lib/vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ In file included from func.cpp:2: In file included from ./func.h:4: In file included from ../lib/pseq.h:34: ../lib/glm.h:44:45: warning: non-void function does not return a value [-Wreturn-type] bool valid(const bool b) { all_valid = b; }; ^ func.cpp:153:1: warning: non-void function does not return a value [-Wreturn-type] } ^ func.cpp:247:1: warning: non-void function does not return a value in all control paths [-Wreturn-type] } ^ func.cpp:426:1: warning: non-void function does not return a value [-Wreturn-type] } ^ func.cpp:524:1: warning: non-void function does not return a value [-Wreturn-type] } ^ func.cpp:622:1: warning: non-void function does not return a value [-Wreturn-type] } ^ func.cpp:963:1: warning: non-void function does not return a value [-Wreturn-type] } ^ func.cpp:1611:1: warning: non-void function does not return a value [-Wreturn-type] } ^ 13 warnings generated. mv -f .deps/pseq-func.Tpo .deps/pseq-func.Po clang++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-summaries.o -MD -MP -MF .deps/pseq-summaries.Tpo -c -o pseq-summaries.o `test -f 'summaries.cpp' || echo './'`summaries.cpp In file included from summaries.cpp:2: In file included from ./summaries.h:5: In file included from ./func.h:4: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:30: ../lib/helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from summaries.cpp:2: In file included from ./summaries.h:5: In file included from ./func.h:4: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:32: ../lib/meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ../lib/meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from summaries.cpp:2: In file included from ./summaries.h:5: In file included from ./func.h:4: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: In file included from ../lib/vardb.h:8: In file included from ../lib/mask.h:8: ../lib/eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from summaries.cpp:2: In file included from ./summaries.h:5: In file included from ./func.h:4: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: ../lib/vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ In file included from summaries.cpp:2: In file included from ./summaries.h:5: In file included from ./func.h:4: In file included from ../lib/pseq.h:34: ../lib/glm.h:44:45: warning: non-void function does not return a value [-Wreturn-type] bool valid(const bool b) { all_valid = b; }; ^ 6 warnings generated. mv -f .deps/pseq-summaries.Tpo .deps/pseq-summaries.Po clang++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-views.o -MD -MP -MF .deps/pseq-views.Tpo -c -o pseq-views.o `test -f 'views.cpp' || echo './'`views.cpp In file included from views.cpp:2: In file included from ./views.h:9: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:30: ../lib/helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from views.cpp:2: In file included from ./views.h:9: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:32: ../lib/meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ../lib/meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from views.cpp:2: In file included from ./views.h:9: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: In file included from ../lib/vardb.h:8: In file included from ../lib/mask.h:8: ../lib/eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from views.cpp:2: In file included from ./views.h:9: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: ../lib/vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ In file included from views.cpp:2: In file included from ./views.h:9: In file included from ../lib/pseq.h:34: ../lib/glm.h:44:45: warning: non-void function does not return a value [-Wreturn-type] bool valid(const bool b) { all_valid = b; }; ^ 6 warnings generated. mv -f .deps/pseq-views.Tpo .deps/pseq-views.Po clang++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-assoc.o -MD -MP -MF .deps/pseq-assoc.Tpo -c -o pseq-assoc.o `test -f 'assoc.cpp' || echo './'`assoc.cpp In file included from assoc.cpp:1: In file included from ./assoc.h:4: In file included from ../lib/matrix.h:5: ../lib/helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from assoc.cpp:1: In file included from ./assoc.h:5: In file included from ./func.h:4: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:32: ../lib/meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ../lib/meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from assoc.cpp:1: In file included from ./assoc.h:5: In file included from ./func.h:4: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: In file included from ../lib/vardb.h:8: In file included from ../lib/mask.h:8: ../lib/eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from assoc.cpp:1: In file included from ./assoc.h:5: In file included from ./func.h:4: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: ../lib/vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ In file included from assoc.cpp:1: In file included from ./assoc.h:5: In file included from ./func.h:4: In file included from ../lib/pseq.h:34: ../lib/glm.h:44:45: warning: non-void function does not return a value [-Wreturn-type] bool valid(const bool b) { all_valid = b; }; ^ assoc.cpp:27:13: warning: logical not is only applied to the left hand side of this comparison [-Wlogical-not-parentheses] else if ( ! g.phmap.type() == PHE_DICHOT ) ^ ~~ assoc.cpp:27:13: note: add parentheses after the '!' to evaluate the comparison first else if ( ! g.phmap.type() == PHE_DICHOT ) ^ ( ) assoc.cpp:27:13: note: add parentheses around left hand side expression to silence this warning else if ( ! g.phmap.type() == PHE_DICHOT ) ^ ( ) 7 warnings generated. mv -f .deps/pseq-assoc.Tpo .deps/pseq-assoc.Po clang++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-genic.o -MD -MP -MF .deps/pseq-genic.Tpo -c -o pseq-genic.o `test -f 'genic.cpp' || echo './'`genic.cpp In file included from genic.cpp:1: In file included from ./genic.h:5: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:30: ../lib/helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from genic.cpp:1: In file included from ./genic.h:5: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:32: ../lib/meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ../lib/meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from genic.cpp:1: In file included from ./genic.h:5: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: In file included from ../lib/vardb.h:8: In file included from ../lib/mask.h:8: ../lib/eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from genic.cpp:1: In file included from ./genic.h:5: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: ../lib/vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ In file included from genic.cpp:1: In file included from ./genic.h:5: In file included from ../lib/pseq.h:34: ../lib/glm.h:44:45: warning: non-void function does not return a value [-Wreturn-type] bool valid(const bool b) { all_valid = b; }; ^ 6 warnings generated. mv -f .deps/pseq-genic.Tpo .deps/pseq-genic.Po clang++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-compare.o -MD -MP -MF .deps/pseq-compare.Tpo -c -o pseq-compare.o `test -f 'compare.cpp' || echo './'`compare.cpp In file included from compare.cpp:2: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:30: ../lib/helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from compare.cpp:2: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:32: ../lib/meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ../lib/meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from compare.cpp:2: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: In file included from ../lib/vardb.h:8: In file included from ../lib/mask.h:8: ../lib/eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from compare.cpp:2: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: ../lib/vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ In file included from compare.cpp:2: In file included from ../lib/pseq.h:34: ../lib/glm.h:44:45: warning: non-void function does not return a value [-Wreturn-type] bool valid(const bool b) { all_valid = b; }; ^ 6 warnings generated. mv -f .deps/pseq-compare.Tpo .deps/pseq-compare.Po clang++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-ibd.o -MD -MP -MF .deps/pseq-ibd.Tpo -c -o pseq-ibd.o `test -f 'ibd.cpp' || echo './'`ibd.cpp In file included from ibd.cpp:1: In file included from ./ibd.h:9: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:30: ../lib/helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from ibd.cpp:1: In file included from ./ibd.h:9: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:32: ../lib/meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ../lib/meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from ibd.cpp:1: In file included from ./ibd.h:9: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: In file included from ../lib/vardb.h:8: In file included from ../lib/mask.h:8: ../lib/eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from ibd.cpp:1: In file included from ./ibd.h:9: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: ../lib/vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ In file included from ibd.cpp:1: In file included from ./ibd.h:9: In file included from ../lib/pseq.h:34: ../lib/glm.h:44:45: warning: non-void function does not return a value [-Wreturn-type] bool valid(const bool b) { all_valid = b; }; ^ ibd.cpp:601:50: warning: add explicit braces to avoid dangling else [-Wdangling-else] if ( aff == CASE ) { uniq.insert(v); alta++; } else altu++; ^ 7 warnings generated. mv -f .deps/pseq-ibd.Tpo .deps/pseq-ibd.Po clang++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-loaders.o -MD -MP -MF .deps/pseq-loaders.Tpo -c -o pseq-loaders.o `test -f 'loaders.cpp' || echo './'`loaders.cpp In file included from loaders.cpp:1: In file included from ./loaders.h:4: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:30: ../lib/helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from loaders.cpp:1: In file included from ./loaders.h:4: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:32: ../lib/meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ../lib/meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from loaders.cpp:1: In file included from ./loaders.h:4: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: In file included from ../lib/vardb.h:8: In file included from ../lib/mask.h:8: ../lib/eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from loaders.cpp:1: In file included from ./loaders.h:4: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: ../lib/vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ In file included from loaders.cpp:1: In file included from ./loaders.h:4: In file included from ../lib/pseq.h:34: ../lib/glm.h:44:45: warning: non-void function does not return a value [-Wreturn-type] bool valid(const bool b) { all_valid = b; }; ^ loaders.cpp:723:1: warning: non-void function does not return a value [-Wreturn-type] } ^ loaders.cpp:728:1: warning: non-void function does not return a value [-Wreturn-type] } ^ 8 warnings generated. mv -f .deps/pseq-loaders.Tpo .deps/pseq-loaders.Po clang++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-clusters.o -MD -MP -MF .deps/pseq-clusters.Tpo -c -o pseq-clusters.o `test -f 'clusters.cpp' || echo './'`clusters.cpp In file included from clusters.cpp:3: In file included from ./func.h:4: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:30: ../lib/helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from clusters.cpp:3: In file included from ./func.h:4: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:32: ../lib/meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ../lib/meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from clusters.cpp:3: In file included from ./func.h:4: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: In file included from ../lib/vardb.h:8: In file included from ../lib/mask.h:8: ../lib/eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from clusters.cpp:3: In file included from ./func.h:4: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: ../lib/vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ In file included from clusters.cpp:3: In file included from ./func.h:4: In file included from ../lib/pseq.h:34: ../lib/glm.h:44:45: warning: non-void function does not return a value [-Wreturn-type] bool valid(const bool b) { all_valid = b; }; ^ 6 warnings generated. mv -f .deps/pseq-clusters.Tpo .deps/pseq-clusters.Po clang++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-varfunc.o -MD -MP -MF .deps/pseq-varfunc.Tpo -c -o pseq-varfunc.o `test -f 'varfunc.cpp' || echo './'`varfunc.cpp In file included from varfunc.cpp:2: In file included from ./util.h:4: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:30: ../lib/helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from varfunc.cpp:2: In file included from ./util.h:4: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:32: ../lib/meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ../lib/meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from varfunc.cpp:2: In file included from ./util.h:4: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: In file included from ../lib/vardb.h:8: In file included from ../lib/mask.h:8: ../lib/eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from varfunc.cpp:2: In file included from ./util.h:4: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: ../lib/vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ In file included from varfunc.cpp:2: In file included from ./util.h:4: In file included from ../lib/pseq.h:34: ../lib/glm.h:44:45: warning: non-void function does not return a value [-Wreturn-type] bool valid(const bool b) { all_valid = b; }; ^ varfunc.cpp:360:1: warning: non-void function does not return a value [-Wreturn-type] } ^ 7 warnings generated. mv -f .deps/pseq-varfunc.Tpo .deps/pseq-varfunc.Po clang++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-glm-tests.o -MD -MP -MF .deps/pseq-glm-tests.Tpo -c -o pseq-glm-tests.o `test -f 'glm-tests.cpp' || echo './'`glm-tests.cpp In file included from glm-tests.cpp:1: In file included from ./assoc.h:4: In file included from ../lib/matrix.h:5: ../lib/helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from glm-tests.cpp:1: In file included from ./assoc.h:5: In file included from ./func.h:4: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:32: ../lib/meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ../lib/meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from glm-tests.cpp:1: In file included from ./assoc.h:5: In file included from ./func.h:4: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: In file included from ../lib/vardb.h:8: In file included from ../lib/mask.h:8: ../lib/eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from glm-tests.cpp:1: In file included from ./assoc.h:5: In file included from ./func.h:4: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: ../lib/vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ In file included from glm-tests.cpp:1: In file included from ./assoc.h:5: In file included from ./func.h:4: In file included from ../lib/pseq.h:34: ../lib/glm.h:44:45: warning: non-void function does not return a value [-Wreturn-type] bool valid(const bool b) { all_valid = b; }; ^ 6 warnings generated. mv -f .deps/pseq-glm-tests.Tpo .deps/pseq-glm-tests.Po clang++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-stepup.o -MD -MP -MF .deps/pseq-stepup.Tpo -c -o pseq-stepup.o `test -f 'stepup.cpp' || echo './'`stepup.cpp In file included from stepup.cpp:2: In file included from ./genic.h:5: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:30: ../lib/helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from stepup.cpp:2: In file included from ./genic.h:5: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:32: ../lib/meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ../lib/meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from stepup.cpp:2: In file included from ./genic.h:5: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: In file included from ../lib/vardb.h:8: In file included from ../lib/mask.h:8: ../lib/eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from stepup.cpp:2: In file included from ./genic.h:5: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: ../lib/vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ In file included from stepup.cpp:2: In file included from ./genic.h:5: In file included from ../lib/pseq.h:34: ../lib/glm.h:44:45: warning: non-void function does not return a value [-Wreturn-type] bool valid(const bool b) { all_valid = b; }; ^ 6 warnings generated. mv -f .deps/pseq-stepup.Tpo .deps/pseq-stepup.Po clang++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-kbac.o -MD -MP -MF .deps/pseq-kbac.Tpo -c -o pseq-kbac.o `test -f 'kbac.cpp' || echo './'`kbac.cpp In file included from kbac.cpp:2: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:30: ../lib/helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from kbac.cpp:2: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:32: ../lib/meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ../lib/meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from kbac.cpp:2: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: In file included from ../lib/vardb.h:8: In file included from ../lib/mask.h:8: ../lib/eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from kbac.cpp:2: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: ../lib/vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ In file included from kbac.cpp:2: In file included from ../lib/pseq.h:34: ../lib/glm.h:44:45: warning: non-void function does not return a value [-Wreturn-type] bool valid(const bool b) { all_valid = b; }; ^ 6 warnings generated. mv -f .deps/pseq-kbac.Tpo .deps/pseq-kbac.Po clang++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-netassoc.o -MD -MP -MF .deps/pseq-netassoc.Tpo -c -o pseq-netassoc.o `test -f 'netassoc.cpp' || echo './'`netassoc.cpp In file included from netassoc.cpp:2: In file included from ./netassoc.h:4: In file included from ./func.h:4: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:30: ../lib/helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from netassoc.cpp:2: In file included from ./netassoc.h:4: In file included from ./func.h:4: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:32: ../lib/meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ../lib/meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from netassoc.cpp:2: In file included from ./netassoc.h:4: In file included from ./func.h:4: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: In file included from ../lib/vardb.h:8: In file included from ../lib/mask.h:8: ../lib/eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from netassoc.cpp:2: In file included from ./netassoc.h:4: In file included from ./func.h:4: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: ../lib/vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ In file included from netassoc.cpp:2: In file included from ./netassoc.h:4: In file included from ./func.h:4: In file included from ../lib/pseq.h:34: ../lib/glm.h:44:45: warning: non-void function does not return a value [-Wreturn-type] bool valid(const bool b) { all_valid = b; }; ^ netassoc.cpp:225:1: warning: non-void function does not return a value [-Wreturn-type] } ^ 7 warnings generated. mv -f .deps/pseq-netassoc.Tpo .deps/pseq-netassoc.Po clang++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-gseq.o -MD -MP -MF .deps/pseq-gseq.Tpo -c -o pseq-gseq.o `test -f 'gseq.cpp' || echo './'`gseq.cpp In file included from gseq.cpp:1: In file included from ./views.h:9: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:30: ../lib/helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from gseq.cpp:1: In file included from ./views.h:9: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:32: ../lib/meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ../lib/meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from gseq.cpp:1: In file included from ./views.h:9: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: In file included from ../lib/vardb.h:8: In file included from ../lib/mask.h:8: ../lib/eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from gseq.cpp:1: In file included from ./views.h:9: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: ../lib/vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ In file included from gseq.cpp:1: In file included from ./views.h:9: In file included from ../lib/pseq.h:34: ../lib/glm.h:44:45: warning: non-void function does not return a value [-Wreturn-type] bool valid(const bool b) { all_valid = b; }; ^ 6 warnings generated. mv -f .deps/pseq-gseq.Tpo .deps/pseq-gseq.Po clang++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-extra.o -MD -MP -MF .deps/pseq-extra.Tpo -c -o pseq-extra.o `test -f 'extra.cpp' || echo './'`extra.cpp In file included from extra.cpp:4: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:30: ../lib/helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from extra.cpp:4: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:32: ../lib/meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ../lib/meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from extra.cpp:4: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: In file included from ../lib/vardb.h:8: In file included from ../lib/mask.h:8: ../lib/eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from extra.cpp:4: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: ../lib/vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ In file included from extra.cpp:4: In file included from ../lib/pseq.h:34: ../lib/glm.h:44:45: warning: non-void function does not return a value [-Wreturn-type] bool valid(const bool b) { all_valid = b; }; ^ 6 warnings generated. mv -f .deps/pseq-extra.Tpo .deps/pseq-extra.Po /opt/pkg/bin/mksh ../libtool --tag=CXX --mode=link clang++ -pipe -Os -I/opt/pkg/include -lz -ldl -L/opt/pkg/lib -o pseq pseq-util.o pseq-ibs.o pseq-main.o pseq-func.o pseq-summaries.o pseq-views.o pseq-assoc.o pseq-genic.o pseq-compare.o pseq-ibd.o pseq-loaders.o pseq-clusters.o pseq-varfunc.o pseq-glm-tests.o pseq-stepup.o pseq-kbac.o pseq-netassoc.o pseq-gseq.o pseq-extra.o ../lib/libplinkseq.la libtool: link: clang++ -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -o .libs/pseq pseq-util.o pseq-ibs.o pseq-main.o pseq-func.o pseq-summaries.o pseq-views.o pseq-assoc.o pseq-genic.o pseq-compare.o pseq-ibd.o pseq-loaders.o pseq-clusters.o pseq-varfunc.o pseq-glm-tests.o pseq-stepup.o pseq-kbac.o pseq-netassoc.o pseq-gseq.o pseq-extra.o -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib ../lib/.libs/libplinkseq.dylib /Users/pbulk/build/biology/plinkseq/work/.buildlink/lib/libz.dylib -lprotobuf Making all in browser clang++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pbrowse_cgi-psb.o -MD -MP -MF .deps/pbrowse_cgi-psb.Tpo -c -o pbrowse_cgi-psb.o `test -f 'psb.cpp' || echo './'`psb.cpp In file included from psb.cpp:1: In file included from ./psb.h:4: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:30: ../lib/helper.h:730:3: warning: non-void function does not return a value [-Wreturn-type] } ^ In file included from psb.cpp:1: In file included from ./psb.h:4: In file included from ../lib/pseq.h:5: In file included from ../lib/filemap.h:32: ../lib/meta.h:554:15: warning: enumeration values 'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:554:15: note: add missing switch cases switch( m->mt ) ^ ../lib/meta.h:589:11: warning: enumeration values 'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch] switch( m->mt ) ^ ../lib/meta.h:589:11: note: add missing switch cases switch( m->mt ) ^ In file included from psb.cpp:1: In file included from ./psb.h:4: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: In file included from ../lib/vardb.h:8: In file included from ../lib/mask.h:8: ../lib/eval.h:36:52: warning: non-void function does not return a value [-Wreturn-type] bool genmeta( const bool b ) { genmeta_mode = b; } ^ In file included from psb.cpp:1: In file included from ./psb.h:4: In file included from ../lib/pseq.h:7: In file included from ../lib/gstore.h:15: ../lib/vardb.h:304:59: warning: non-void function does not return a value [-Wreturn-type] bool compression( const bool b ) { using_compression=b; } ^ In file included from psb.cpp:1: In file included from ./psb.h:4: In file included from ../lib/pseq.h:34: ../lib/glm.h:44:45: warning: non-void function does not return a value [-Wreturn-type] bool valid(const bool b) { all_valid = b; }; ^ In file included from psb.cpp:2: ./cgi.h:19:3: error: ISO C++17 does not allow 'register' storage class specifier [-Wregister] register char digit; ^~~~~~~~~ ./cgi.h:29:3: error: ISO C++17 does not allow 'register' storage class specifier [-Wregister] register int i,j; ^~~~~~~~~ ./cgi.h:29:3: error: ISO C++17 does not allow 'register' storage class specifier [-Wregister] register int i,j; ^~~~~~~~~ ./cgi.h:45:3: error: ISO C++17 does not allow 'register' storage class specifier [-Wregister] register int i ; ^~~~~~~~~ ./cgi.h:103:14: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (eqpos=strchr(pairlist[i], '=')) { ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ./cgi.h:103:14: note: place parentheses around the assignment to silence this warning if (eqpos=strchr(pairlist[i], '=')) { ^ ( ) ./cgi.h:103:14: note: use '==' to turn this assignment into an equality comparison if (eqpos=strchr(pairlist[i], '=')) { ^ == 7 warnings and 4 errors generated. *** [pbrowse_cgi-psb.o] Error code 1 bmake[2]: stopped making "all" in /Users/pbulk/build/biology/plinkseq/work/plinkseq-0.08/browser bmake[2]: 1 error bmake[2]: stopped making "all" in /Users/pbulk/build/biology/plinkseq/work/plinkseq-0.08/browser bmake[1]: stopped making "all-recursive" in /Users/pbulk/build/biology/plinkseq/work/plinkseq-0.08 *** [all] Error code 2 bmake: stopped making "all" in /Users/pbulk/build/biology/plinkseq/work/plinkseq-0.08 bmake: 1 error bmake: stopped making "all" in /Users/pbulk/build/biology/plinkseq/work/plinkseq-0.08 *** Error code 2 Stop. bmake[1]: stopped making "all" in /Volumes/data/jenkins/workspace/pkgsrc-macos-trunk-arm64/biology/plinkseq *** Error code 1 Stop. bmake: stopped making "all" in /Volumes/data/jenkins/workspace/pkgsrc-macos-trunk-arm64/biology/plinkseq