[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir conf24633.dir
<.> /bin/mkdir -p conf24633.dir
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir -p .
<.> /bin/mkdir -p -p .
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir --version
<.> /bin/mkdir -p --version
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir .tst
<.> /bin/mkdir -p .tst
[*] cc --version
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 --version -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] cc -v
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -v -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] cc -V
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -V -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] cc -pipe -Os -I/opt/pkg/include -I/opt/pkg/include -L/opt/pkg/lib conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -o conftest -pipe -Os -I/opt/pkg/include -I/opt/pkg/include -L/opt/pkg/lib conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -o conftest -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -c -g -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -g -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir conftest.dir
<.> /bin/mkdir -p conftest.dir
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir sub
<.> /bin/mkdir -p sub
[*] cc -MT sub/conftest.o -MD -MP -MF sub/conftest.TPo -c -o sub/conftest.o sub/conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -MT sub/conftest.o -MD -MP -MF sub/conftest.TPo -c -o sub/conftest.o sub/conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] cc -print-prog-name=ld
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -print-prog-name=ld -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -o conftest -pipe -Os -I/opt/pkg/include -I/opt/pkg/include -L/opt/pkg/lib conftest.c conftstm.o
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -o conftest -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib conftest.c conftstm.o -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -pipe -Os -I/opt/pkg/include -L/opt/pkg/lib -o libconftest.dylib -dynamiclib -Wl,-single_module conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib -o libconftest.dylib -dynamiclib -Wl,-single_module conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -o conftest -pipe -Os -I/opt/pkg/include -I/opt/pkg/include -L/opt/pkg/lib -Wl,-exported_symbols_list,conftest.sym conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -o conftest -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib -Wl,-exported_symbols_list -Wl,conftest.sym conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -E -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -E -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -E -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -E -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -E -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -E -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -E -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -E -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -E -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -E -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -E -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -E -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -o conftest -pipe -Os -I/opt/pkg/include -I/opt/pkg/include -L/opt/pkg/lib conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -o conftest -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir .libs
<.> /bin/mkdir -p .libs
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -o conftest -pipe -Os -I/opt/pkg/include -I/opt/pkg/include -L/opt/pkg/lib conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -o conftest -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include -fno-rtti -fno-exceptions conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -fno-rtti -fno-exceptions conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include -fno-common -DPIC -DPIC conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -fno-common -DPIC -DPIC conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -o conftest -pipe -Os -I/opt/pkg/include -I/opt/pkg/include -L/opt/pkg/lib -static conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -o conftest -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib -static conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir conftest
<.> /bin/mkdir -p conftest
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir out
<.> /bin/mkdir -p out
[*] cc -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include -o out/conftest2.o conftest.c
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -o out/conftest2.o conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -print-search-dirs
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -print-search-dirs -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] cc -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -L/opt/pkg/lib -print-multi-os-directory
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib -print-multi-os-directory -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -o conftest -pipe -Os -I/opt/pkg/include -I/opt/pkg/include -L/opt/pkg/lib conftest.c -lprotobuf
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -o conftest -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib conftest.c -lprotobuf -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] c++ --version
<.> /usr/bin/clang++ -m64 --version -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17 -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] c++ -v
<.> /usr/bin/clang++ -m64 -v -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17 -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] c++ -V
<.> /usr/bin/clang++ -m64 -V -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17 -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] c++ -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.cpp
<.> /usr/bin/clang++ -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -c -g -I/opt/pkg/include conftest.cpp
<.> /usr/bin/clang++ -m64 -c -g -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir conftest.dir
<.> /bin/mkdir -p conftest.dir
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir sub
<.> /bin/mkdir -p sub
[*] c++ -MT sub/conftest.o -MD -MP -MF sub/conftest.TPo -c -o sub/conftest.o sub/conftest.c
<.> /usr/bin/clang++ -m64 -MT sub/conftest.o -MD -MP -MF sub/conftest.TPo -c -o sub/conftest.o sub/conftest.c -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17 -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] c++ --version
<.> /usr/bin/clang++ -m64 --version -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17 -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] c++ -v
<.> /usr/bin/clang++ -m64 -v -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17 -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] c++ -V
<.> /usr/bin/clang++ -m64 -V -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17 -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] c++ -E -I/opt/pkg/include conftest.cpp
<.> /usr/bin/clang++ -m64 -E -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -E -I/opt/pkg/include conftest.cpp
<.> /usr/bin/clang++ -m64 -E -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -E -I/opt/pkg/include conftest.cpp
<.> /usr/bin/clang++ -m64 -E -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -E -I/opt/pkg/include conftest.cpp
<.> /usr/bin/clang++ -m64 -E -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.cpp
<.> /usr/bin/clang++ -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -o conftest -pipe -Os -I/opt/pkg/include -I/opt/pkg/include -L/opt/pkg/lib conftest.cpp
<.> /usr/bin/clang++ -m64 -o conftest -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib conftest.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -print-prog-name=ld
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[*] c++ -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include conftest.cpp
<.> /usr/bin/clang++ -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include -fno-common -DPIC -DPIC conftest.cpp
<.> /usr/bin/clang++ -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -fno-common -DPIC -DPIC conftest.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -o conftest -pipe -Os -I/opt/pkg/include -I/opt/pkg/include -L/opt/pkg/lib -static conftest.cpp
<.> /usr/bin/clang++ -m64 -o conftest -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib -static conftest.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir conftest
<.> /bin/mkdir -p conftest
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir out
<.> /bin/mkdir -p out
[*] c++ -c -pipe -Os -I/opt/pkg/include -I/opt/pkg/include -o out/conftest2.o conftest.cpp
<.> /usr/bin/clang++ -m64 -c -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -o out/conftest2.o conftest.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] cc --version
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 --version -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] cc -v
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -v -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] cc -V
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -V -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir conf31493.dir
<.> /bin/mkdir -p conf31493.dir
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir -p .
<.> /bin/mkdir -p -p .
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir -p lib/./.deps
<.> /bin/mkdir -p -p lib/./.deps
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir -p client/./.deps
<.> /bin/mkdir -p -p client/./.deps
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir -p browser/./.deps
<.> /bin/mkdir -p -p browser/./.deps
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir -p index/./.deps
<.> /bin/mkdir -p -p index/./.deps
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir -p util/./.deps
<.> /bin/mkdir -p -p util/./.deps
[*] libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-eval.lo -MD -MP -MF .deps/libplinkseq_la-eval.Tpo -c -o libplinkseq_la-eval.lo eval.cpp
<.> /opt/pkg/bin/libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-eval.lo -MD -MP -MF .deps/libplinkseq_la-eval.Tpo -c -o libplinkseq_la-eval.lo eval.cpp
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir .libs
<.> /bin/mkdir -p .libs
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-eval.lo -MD -MP -MF .deps/libplinkseq_la-eval.Tpo -c eval.cpp -fno-common -DPIC -o .libs/libplinkseq_la-eval.o
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-eval.lo -MD -MP -MF .deps/libplinkseq_la-eval.Tpo -c eval.cpp -fno-common -DPIC -o .libs/libplinkseq_la-eval.o -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-eval.lo -MD -MP -MF .deps/libplinkseq_la-eval.Tpo -c eval.cpp -o libplinkseq_la-eval.o
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-eval.lo -MD -MP -MF .deps/libplinkseq_la-eval.Tpo -c eval.cpp -o libplinkseq_la-eval.o -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-token.lo -MD -MP -MF .deps/libplinkseq_la-token.Tpo -c -o libplinkseq_la-token.lo token.cpp
<.> /opt/pkg/bin/libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-token.lo -MD -MP -MF .deps/libplinkseq_la-token.Tpo -c -o libplinkseq_la-token.lo token.cpp
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-token.lo -MD -MP -MF .deps/libplinkseq_la-token.Tpo -c token.cpp -fno-common -DPIC -o .libs/libplinkseq_la-token.o
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-token.lo -MD -MP -MF .deps/libplinkseq_la-token.Tpo -c token.cpp -fno-common -DPIC -o .libs/libplinkseq_la-token.o -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-token.lo -MD -MP -MF .deps/libplinkseq_la-token.Tpo -c token.cpp -o libplinkseq_la-token.o
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-token.lo -MD -MP -MF .deps/libplinkseq_la-token.Tpo -c token.cpp -o libplinkseq_la-token.o -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-vcfz.lo -MD -MP -MF .deps/libplinkseq_la-vcfz.Tpo -c -o libplinkseq_la-vcfz.lo vcfz.cpp
<.> /opt/pkg/bin/libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-vcfz.lo -MD -MP -MF .deps/libplinkseq_la-vcfz.Tpo -c -o libplinkseq_la-vcfz.lo vcfz.cpp
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-vcfz.lo -MD -MP -MF .deps/libplinkseq_la-vcfz.Tpo -c vcfz.cpp -fno-common -DPIC -o .libs/libplinkseq_la-vcfz.o
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-vcfz.lo -MD -MP -MF .deps/libplinkseq_la-vcfz.Tpo -c vcfz.cpp -fno-common -DPIC -o .libs/libplinkseq_la-vcfz.o -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-vcfz.lo -MD -MP -MF .deps/libplinkseq_la-vcfz.Tpo -c vcfz.cpp -o libplinkseq_la-vcfz.o
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-vcfz.lo -MD -MP -MF .deps/libplinkseq_la-vcfz.Tpo -c vcfz.cpp -o libplinkseq_la-vcfz.o -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-gstore.lo -MD -MP -MF .deps/libplinkseq_la-gstore.Tpo -c -o libplinkseq_la-gstore.lo gstore.cpp
<.> /opt/pkg/bin/libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-gstore.lo -MD -MP -MF .deps/libplinkseq_la-gstore.Tpo -c -o libplinkseq_la-gstore.lo gstore.cpp
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-gstore.lo -MD -MP -MF .deps/libplinkseq_la-gstore.Tpo -c gstore.cpp -fno-common -DPIC -o .libs/libplinkseq_la-gstore.o
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-gstore.lo -MD -MP -MF .deps/libplinkseq_la-gstore.Tpo -c gstore.cpp -fno-common -DPIC -o .libs/libplinkseq_la-gstore.o -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-gstore.lo -MD -MP -MF .deps/libplinkseq_la-gstore.Tpo -c gstore.cpp -o libplinkseq_la-gstore.o
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-gstore.lo -MD -MP -MF .deps/libplinkseq_la-gstore.Tpo -c gstore.cpp -o libplinkseq_la-gstore.o -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-globals.lo -MD -MP -MF .deps/libplinkseq_la-globals.Tpo -c -o libplinkseq_la-globals.lo globals.cpp
<.> /opt/pkg/bin/libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-globals.lo -MD -MP -MF .deps/libplinkseq_la-globals.Tpo -c -o libplinkseq_la-globals.lo globals.cpp
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-globals.lo -MD -MP -MF .deps/libplinkseq_la-globals.Tpo -c globals.cpp -fno-common -DPIC -o .libs/libplinkseq_la-globals.o
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-globals.lo -MD -MP -MF .deps/libplinkseq_la-globals.Tpo -c globals.cpp -fno-common -DPIC -o .libs/libplinkseq_la-globals.o -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-globals.lo -MD -MP -MF .deps/libplinkseq_la-globals.Tpo -c globals.cpp -o libplinkseq_la-globals.o
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-globals.lo -MD -MP -MF .deps/libplinkseq_la-globals.Tpo -c globals.cpp -o libplinkseq_la-globals.o -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-variant.lo -MD -MP -MF .deps/libplinkseq_la-variant.Tpo -c -o libplinkseq_la-variant.lo variant.cpp
<.> /opt/pkg/bin/libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-variant.lo -MD -MP -MF .deps/libplinkseq_la-variant.Tpo -c -o libplinkseq_la-variant.lo variant.cpp
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-variant.lo -MD -MP -MF .deps/libplinkseq_la-variant.Tpo -c variant.cpp -fno-common -DPIC -o .libs/libplinkseq_la-variant.o
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-variant.lo -MD -MP -MF .deps/libplinkseq_la-variant.Tpo -c variant.cpp -fno-common -DPIC -o .libs/libplinkseq_la-variant.o -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
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<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-vcfiterate.lo -MD -MP -MF .deps/libplinkseq_la-vcfiterate.Tpo -c vcfiterate.cpp -fno-common -DPIC -o .libs/libplinkseq_la-vcfiterate.o -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-vcfiterate.lo -MD -MP -MF .deps/libplinkseq_la-vcfiterate.Tpo -c vcfiterate.cpp -o libplinkseq_la-vcfiterate.o
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-vcfiterate.lo -MD -MP -MF .deps/libplinkseq_la-vcfiterate.Tpo -c vcfiterate.cpp -o libplinkseq_la-vcfiterate.o -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-netdb.lo -MD -MP -MF .deps/libplinkseq_la-netdb.Tpo -c -o libplinkseq_la-netdb.lo netdb.cpp
<.> /opt/pkg/bin/libtool --tag=CXX --mode=compile clang++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-netdb.lo -MD -MP -MF .deps/libplinkseq_la-netdb.Tpo -c -o libplinkseq_la-netdb.lo netdb.cpp
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-netdb.lo -MD -MP -MF .deps/libplinkseq_la-netdb.Tpo -c netdb.cpp -fno-common -DPIC -o .libs/libplinkseq_la-netdb.o
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-netdb.lo -MD -MP -MF .deps/libplinkseq_la-netdb.Tpo -c netdb.cpp -fno-common -DPIC -o .libs/libplinkseq_la-netdb.o -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-netdb.lo -MD -MP -MF .deps/libplinkseq_la-netdb.Tpo -c netdb.cpp -o libplinkseq_la-netdb.o
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-netdb.lo -MD -MP -MF .deps/libplinkseq_la-netdb.Tpo -c netdb.cpp -o libplinkseq_la-netdb.o -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] libtool --tag=CC --mode=compile clang -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT libplinkseq_la-sqlite3.lo -MD -MP -MF .deps/libplinkseq_la-sqlite3.Tpo -c -o libplinkseq_la-sqlite3.lo sqlite3.c
<.> /opt/pkg/bin/libtool --tag=CC --mode=compile clang -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-sqlite3.lo -MD -MP -MF .deps/libplinkseq_la-sqlite3.Tpo -c -o libplinkseq_la-sqlite3.lo sqlite3.c
[*] cc -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-sqlite3.lo -MD -MP -MF .deps/libplinkseq_la-sqlite3.Tpo -c sqlite3.c -fno-common -DPIC -o .libs/libplinkseq_la-sqlite3.o
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-sqlite3.lo -MD -MP -MF .deps/libplinkseq_la-sqlite3.Tpo -c sqlite3.c -fno-common -DPIC -o .libs/libplinkseq_la-sqlite3.o -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] cc -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-sqlite3.lo -MD -MP -MF .deps/libplinkseq_la-sqlite3.Tpo -c sqlite3.c -o libplinkseq_la-sqlite3.o
<.> /usr/bin/clang -fcommon -Wno-error=implicit-function-declaration -Wno-error=implicit-int -Wno-error=int-conversion -Wno-error=incompatible-pointer-types -m64 -DHAVE_CONFIG_H -I. -I.. -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT libplinkseq_la-sqlite3.lo -MD -MP -MF .deps/libplinkseq_la-sqlite3.Tpo -c sqlite3.c -o libplinkseq_la-sqlite3.o -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk
[*] libtool --tag=CXX --mode=link clang++ -pipe -Os -I/opt/pkg/include -L/opt/pkg/lib -o libplinkseq.la -rpath /opt/pkg/lib libplinkseq_la-eval.lo libplinkseq_la-token.lo libplinkseq_la-vcfz.lo libplinkseq_la-gstore.lo libplinkseq_la-globals.lo libplinkseq_la-variant.lo libplinkseq_la-svar.lo libplinkseq_la-genotype.lo libplinkseq_la-meta.lo libplinkseq_la-regions.lo libplinkseq_la-filemap.lo libplinkseq_la-vcf.lo libplinkseq_la-bcf.lo libplinkseq_la-zfstream.lo libplinkseq_la-sqlwrap.lo libplinkseq_la-helper.lo libplinkseq_la-locdb.lo libplinkseq_la-vardb.lo libplinkseq_la-segments.lo libplinkseq_la-varfunc.lo libplinkseq_la-variant.pb.lo libplinkseq_la-refdb.lo libplinkseq_la-seqdb.lo libplinkseq_la-annot.lo libplinkseq_la-inddb.lo libplinkseq_la-mask.lo libplinkseq_la-reffuncs.lo libplinkseq_la-vgroup.lo libplinkseq_la-allele.lo libplinkseq_la-individual.lo libplinkseq_la-indmap.lo libplinkseq_la-phmap.lo libplinkseq_la-permute.lo libplinkseq_la-crandom.lo libplinkseq_la-defs.lo libplinkseq_la-em.lo libplinkseq_la-bed.lo libplinkseq_la-varmeta.lo libplinkseq_la-pp.lo libplinkseq_la-pp.pb.lo libplinkseq_la-statistics.lo libplinkseq_la-dcdflib.lo libplinkseq_la-bgzf.lo libplinkseq_la-fisher.lo libplinkseq_la-glm.lo libplinkseq_la-matrix.lo libplinkseq_la-iterate.lo libplinkseq_la-vcfiterate.lo libplinkseq_la-netdb.lo libplinkseq_la-sqlite3.lo -lz -lprotobuf
<.> /opt/pkg/bin/libtool --tag=CXX --mode=link clang++ -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib -o libplinkseq.la -rpath /opt/pkg/lib libplinkseq_la-eval.lo libplinkseq_la-token.lo libplinkseq_la-vcfz.lo libplinkseq_la-gstore.lo libplinkseq_la-globals.lo libplinkseq_la-variant.lo libplinkseq_la-svar.lo libplinkseq_la-genotype.lo libplinkseq_la-meta.lo libplinkseq_la-regions.lo libplinkseq_la-filemap.lo libplinkseq_la-vcf.lo libplinkseq_la-bcf.lo libplinkseq_la-zfstream.lo libplinkseq_la-sqlwrap.lo libplinkseq_la-helper.lo libplinkseq_la-locdb.lo libplinkseq_la-vardb.lo libplinkseq_la-segments.lo libplinkseq_la-varfunc.lo libplinkseq_la-variant.pb.lo libplinkseq_la-refdb.lo libplinkseq_la-seqdb.lo libplinkseq_la-annot.lo libplinkseq_la-inddb.lo libplinkseq_la-mask.lo libplinkseq_la-reffuncs.lo libplinkseq_la-vgroup.lo libplinkseq_la-allele.lo libplinkseq_la-individual.lo libplinkseq_la-indmap.lo libplinkseq_la-phmap.lo libplinkseq_la-permute.lo libplinkseq_la-crandom.lo libplinkseq_la-defs.lo libplinkseq_la-em.lo libplinkseq_la-bed.lo libplinkseq_la-varmeta.lo libplinkseq_la-pp.lo libplinkseq_la-pp.pb.lo libplinkseq_la-statistics.lo libplinkseq_la-dcdflib.lo libplinkseq_la-bgzf.lo libplinkseq_la-fisher.lo libplinkseq_la-glm.lo libplinkseq_la-matrix.lo libplinkseq_la-iterate.lo libplinkseq_la-vcfiterate.lo libplinkseq_la-netdb.lo libplinkseq_la-sqlite3.lo -lz -lprotobuf
[*] c++ -r -keep_private_externs -nostdlib -o .libs/libplinkseq.0.dylib-master.o .libs/libplinkseq_la-eval.o .libs/libplinkseq_la-token.o .libs/libplinkseq_la-vcfz.o .libs/libplinkseq_la-gstore.o .libs/libplinkseq_la-globals.o .libs/libplinkseq_la-variant.o .libs/libplinkseq_la-svar.o .libs/libplinkseq_la-genotype.o .libs/libplinkseq_la-meta.o .libs/libplinkseq_la-regions.o .libs/libplinkseq_la-filemap.o .libs/libplinkseq_la-vcf.o .libs/libplinkseq_la-bcf.o .libs/libplinkseq_la-zfstream.o .libs/libplinkseq_la-sqlwrap.o .libs/libplinkseq_la-helper.o .libs/libplinkseq_la-locdb.o .libs/libplinkseq_la-vardb.o .libs/libplinkseq_la-segments.o .libs/libplinkseq_la-varfunc.o .libs/libplinkseq_la-variant.pb.o .libs/libplinkseq_la-refdb.o .libs/libplinkseq_la-seqdb.o .libs/libplinkseq_la-annot.o .libs/libplinkseq_la-inddb.o .libs/libplinkseq_la-mask.o .libs/libplinkseq_la-reffuncs.o .libs/libplinkseq_la-vgroup.o .libs/libplinkseq_la-allele.o .libs/libplinkseq_la-individual.o .libs/libplinkseq_la-indmap.o .libs/libplinkseq_la-phmap.o .libs/libplinkseq_la-permute.o .libs/libplinkseq_la-crandom.o .libs/libplinkseq_la-defs.o .libs/libplinkseq_la-em.o .libs/libplinkseq_la-bed.o .libs/libplinkseq_la-varmeta.o .libs/libplinkseq_la-pp.o .libs/libplinkseq_la-pp.pb.o .libs/libplinkseq_la-statistics.o .libs/libplinkseq_la-dcdflib.o .libs/libplinkseq_la-bgzf.o .libs/libplinkseq_la-fisher.o .libs/libplinkseq_la-glm.o .libs/libplinkseq_la-matrix.o .libs/libplinkseq_la-iterate.o .libs/libplinkseq_la-vcfiterate.o .libs/libplinkseq_la-netdb.o .libs/libplinkseq_la-sqlite3.o
<.> /usr/bin/clang++ -m64 -r -keep_private_externs -nostdlib -o .libs/libplinkseq.0.dylib-master.o .libs/libplinkseq_la-eval.o .libs/libplinkseq_la-token.o .libs/libplinkseq_la-vcfz.o .libs/libplinkseq_la-gstore.o .libs/libplinkseq_la-globals.o .libs/libplinkseq_la-variant.o .libs/libplinkseq_la-svar.o .libs/libplinkseq_la-genotype.o .libs/libplinkseq_la-meta.o .libs/libplinkseq_la-regions.o .libs/libplinkseq_la-filemap.o .libs/libplinkseq_la-vcf.o .libs/libplinkseq_la-bcf.o .libs/libplinkseq_la-zfstream.o .libs/libplinkseq_la-sqlwrap.o .libs/libplinkseq_la-helper.o .libs/libplinkseq_la-locdb.o .libs/libplinkseq_la-vardb.o .libs/libplinkseq_la-segments.o .libs/libplinkseq_la-varfunc.o .libs/libplinkseq_la-variant.pb.o .libs/libplinkseq_la-refdb.o .libs/libplinkseq_la-seqdb.o .libs/libplinkseq_la-annot.o .libs/libplinkseq_la-inddb.o .libs/libplinkseq_la-mask.o .libs/libplinkseq_la-reffuncs.o .libs/libplinkseq_la-vgroup.o .libs/libplinkseq_la-allele.o .libs/libplinkseq_la-individual.o .libs/libplinkseq_la-indmap.o .libs/libplinkseq_la-phmap.o .libs/libplinkseq_la-permute.o .libs/libplinkseq_la-crandom.o .libs/libplinkseq_la-defs.o .libs/libplinkseq_la-em.o .libs/libplinkseq_la-bed.o .libs/libplinkseq_la-varmeta.o .libs/libplinkseq_la-pp.o .libs/libplinkseq_la-pp.pb.o .libs/libplinkseq_la-statistics.o .libs/libplinkseq_la-dcdflib.o .libs/libplinkseq_la-bgzf.o .libs/libplinkseq_la-fisher.o .libs/libplinkseq_la-glm.o .libs/libplinkseq_la-matrix.o .libs/libplinkseq_la-iterate.o .libs/libplinkseq_la-vcfiterate.o .libs/libplinkseq_la-netdb.o .libs/libplinkseq_la-sqlite3.o -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17 -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] c++ -dynamiclib -Wl,-undefined -Wl,dynamic_lookup -o .libs/libplinkseq.0.dylib .libs/libplinkseq.0.dylib-master.o -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib /Users/pbulk/build/biology/plinkseq/work/.buildlink/lib/libz.dylib -lprotobuf -Os -install_name /opt/pkg/lib/libplinkseq.0.dylib -compatibility_version 1 -current_version 1.0
<.> /usr/bin/clang++ -m64 -dynamiclib -Wl,-undefined -Wl,dynamic_lookup -o .libs/libplinkseq.0.dylib .libs/libplinkseq.0.dylib-master.o -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib -lz -lprotobuf -Os -install_name /opt/pkg/lib/libplinkseq.0.dylib -compatibility_version 1 -current_version 1.0 -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17 -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-util.o -MD -MP -MF .deps/pseq-util.Tpo -c -o pseq-util.o util.cpp
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT pseq-util.o -MD -MP -MF .deps/pseq-util.Tpo -c -o pseq-util.o util.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-ibs.o -MD -MP -MF .deps/pseq-ibs.Tpo -c -o pseq-ibs.o ibs.cpp
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT pseq-ibs.o -MD -MP -MF .deps/pseq-ibs.Tpo -c -o pseq-ibs.o ibs.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-main.o -MD -MP -MF .deps/pseq-main.Tpo -c -o pseq-main.o main.cpp
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT pseq-main.o -MD -MP -MF .deps/pseq-main.Tpo -c -o pseq-main.o main.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-func.o -MD -MP -MF .deps/pseq-func.Tpo -c -o pseq-func.o func.cpp
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT pseq-func.o -MD -MP -MF .deps/pseq-func.Tpo -c -o pseq-func.o func.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-summaries.o -MD -MP -MF .deps/pseq-summaries.Tpo -c -o pseq-summaries.o summaries.cpp
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT pseq-summaries.o -MD -MP -MF .deps/pseq-summaries.Tpo -c -o pseq-summaries.o summaries.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-views.o -MD -MP -MF .deps/pseq-views.Tpo -c -o pseq-views.o views.cpp
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT pseq-views.o -MD -MP -MF .deps/pseq-views.Tpo -c -o pseq-views.o views.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-assoc.o -MD -MP -MF .deps/pseq-assoc.Tpo -c -o pseq-assoc.o assoc.cpp
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT pseq-assoc.o -MD -MP -MF .deps/pseq-assoc.Tpo -c -o pseq-assoc.o assoc.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-genic.o -MD -MP -MF .deps/pseq-genic.Tpo -c -o pseq-genic.o genic.cpp
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT pseq-genic.o -MD -MP -MF .deps/pseq-genic.Tpo -c -o pseq-genic.o genic.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-compare.o -MD -MP -MF .deps/pseq-compare.Tpo -c -o pseq-compare.o compare.cpp
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT pseq-compare.o -MD -MP -MF .deps/pseq-compare.Tpo -c -o pseq-compare.o compare.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-ibd.o -MD -MP -MF .deps/pseq-ibd.Tpo -c -o pseq-ibd.o ibd.cpp
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT pseq-ibd.o -MD -MP -MF .deps/pseq-ibd.Tpo -c -o pseq-ibd.o ibd.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-loaders.o -MD -MP -MF .deps/pseq-loaders.Tpo -c -o pseq-loaders.o loaders.cpp
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT pseq-loaders.o -MD -MP -MF .deps/pseq-loaders.Tpo -c -o pseq-loaders.o loaders.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-clusters.o -MD -MP -MF .deps/pseq-clusters.Tpo -c -o pseq-clusters.o clusters.cpp
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT pseq-clusters.o -MD -MP -MF .deps/pseq-clusters.Tpo -c -o pseq-clusters.o clusters.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-varfunc.o -MD -MP -MF .deps/pseq-varfunc.Tpo -c -o pseq-varfunc.o varfunc.cpp
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT pseq-varfunc.o -MD -MP -MF .deps/pseq-varfunc.Tpo -c -o pseq-varfunc.o varfunc.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-glm-tests.o -MD -MP -MF .deps/pseq-glm-tests.Tpo -c -o pseq-glm-tests.o glm-tests.cpp
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT pseq-glm-tests.o -MD -MP -MF .deps/pseq-glm-tests.Tpo -c -o pseq-glm-tests.o glm-tests.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-stepup.o -MD -MP -MF .deps/pseq-stepup.Tpo -c -o pseq-stepup.o stepup.cpp
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT pseq-stepup.o -MD -MP -MF .deps/pseq-stepup.Tpo -c -o pseq-stepup.o stepup.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-kbac.o -MD -MP -MF .deps/pseq-kbac.Tpo -c -o pseq-kbac.o kbac.cpp
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT pseq-kbac.o -MD -MP -MF .deps/pseq-kbac.Tpo -c -o pseq-kbac.o kbac.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-netassoc.o -MD -MP -MF .deps/pseq-netassoc.Tpo -c -o pseq-netassoc.o netassoc.cpp
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT pseq-netassoc.o -MD -MP -MF .deps/pseq-netassoc.Tpo -c -o pseq-netassoc.o netassoc.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-gseq.o -MD -MP -MF .deps/pseq-gseq.Tpo -c -o pseq-gseq.o gseq.cpp
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT pseq-gseq.o -MD -MP -MF .deps/pseq-gseq.Tpo -c -o pseq-gseq.o gseq.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pseq-extra.o -MD -MP -MF .deps/pseq-extra.Tpo -c -o pseq-extra.o extra.cpp
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT pseq-extra.o -MD -MP -MF .deps/pseq-extra.Tpo -c -o pseq-extra.o extra.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] libtool --tag=CXX --mode=link clang++ -pipe -Os -I/opt/pkg/include -lz -ldl -L/opt/pkg/lib -o pseq pseq-util.o pseq-ibs.o pseq-main.o pseq-func.o pseq-summaries.o pseq-views.o pseq-assoc.o pseq-genic.o pseq-compare.o pseq-ibd.o pseq-loaders.o pseq-clusters.o pseq-varfunc.o pseq-glm-tests.o pseq-stepup.o pseq-kbac.o pseq-netassoc.o pseq-gseq.o pseq-extra.o ../lib/libplinkseq.la
<.> /opt/pkg/bin/libtool --tag=CXX --mode=link clang++ -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -lz -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib -o pseq pseq-util.o pseq-ibs.o pseq-main.o pseq-func.o pseq-summaries.o pseq-views.o pseq-assoc.o pseq-genic.o pseq-compare.o pseq-ibd.o pseq-loaders.o pseq-clusters.o pseq-varfunc.o pseq-glm-tests.o pseq-stepup.o pseq-kbac.o pseq-netassoc.o pseq-gseq.o pseq-extra.o ../lib/libplinkseq.la
[*] /Users/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir .libs
<.> /bin/mkdir -p .libs
[*] c++ -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -o .libs/pseq pseq-util.o pseq-ibs.o pseq-main.o pseq-func.o pseq-summaries.o pseq-views.o pseq-assoc.o pseq-genic.o pseq-compare.o pseq-ibd.o pseq-loaders.o pseq-clusters.o pseq-varfunc.o pseq-glm-tests.o pseq-stepup.o pseq-kbac.o pseq-netassoc.o pseq-gseq.o pseq-extra.o -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib ../lib/.libs/libplinkseq.dylib /Users/pbulk/build/biology/plinkseq/work/.buildlink/lib/libz.dylib -lprotobuf
<.> /usr/bin/clang++ -m64 -pipe -Os -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -o .libs/pseq pseq-util.o pseq-ibs.o pseq-main.o pseq-func.o pseq-summaries.o pseq-views.o pseq-assoc.o pseq-genic.o pseq-compare.o pseq-ibd.o pseq-loaders.o pseq-clusters.o pseq-varfunc.o pseq-glm-tests.o pseq-stepup.o pseq-kbac.o pseq-netassoc.o pseq-gseq.o pseq-extra.o -L/Users/pbulk/build/biology/plinkseq/work/.buildlink/lib ../lib/.libs/libplinkseq.dylib -lz -lprotobuf -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -Os -I/opt/pkg/include -MT pbrowse_cgi-psb.o -MD -MP -MF .deps/pbrowse_cgi-psb.Tpo -c -o pbrowse_cgi-psb.o psb.cpp
<.> /usr/bin/clang++ -m64 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/Users/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -Os -MT pbrowse_cgi-psb.o -MD -MP -MF .deps/pbrowse_cgi-psb.Tpo -c -o pbrowse_cgi-psb.o psb.cpp -isysroot /Applications/Xcode-15.4.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX14.5.sdk -std=c++17