===> Installing for R-4.5.2 => Generating pre-install file lists mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/R gmake[1]: Entering directory '/Users/pbulk/build/math/R/work/R-4.5.2/m4' gmake[1]: Nothing to be done for 'install'. gmake[1]: Leaving directory '/Users/pbulk/build/math/R/work/R-4.5.2/m4' gmake[1]: Entering directory '/Users/pbulk/build/math/R/work/R-4.5.2/tools' gmake[1]: Nothing to be done for 'install'. gmake[1]: Leaving directory '/Users/pbulk/build/math/R/work/R-4.5.2/tools' gmake[1]: Entering directory '/Users/pbulk/build/math/R/work/R-4.5.2/doc' installing doc ... mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/R/doc mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/share mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/share/man mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/share/man/man1 gmake[2]: Entering directory '/Users/pbulk/build/math/R/work/R-4.5.2/doc/html' installing doc/html ... mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/R/doc/html gmake[2]: Leaving directory '/Users/pbulk/build/math/R/work/R-4.5.2/doc/html' gmake[2]: Entering directory '/Users/pbulk/build/math/R/work/R-4.5.2/doc/manual' installing doc/manual ... mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/R/doc/manual mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/R/doc/manual/images gmake[2]: Leaving directory '/Users/pbulk/build/math/R/work/R-4.5.2/doc/manual' gmake[1]: Leaving directory '/Users/pbulk/build/math/R/work/R-4.5.2/doc' gmake[1]: Entering directory '/Users/pbulk/build/math/R/work/R-4.5.2/etc' mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/R/etc installing etc ... gmake[1]: Leaving directory '/Users/pbulk/build/math/R/work/R-4.5.2/etc' gmake[1]: Entering directory '/Users/pbulk/build/math/R/work/R-4.5.2/share' installing share ... mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/R/share mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/R/share/R mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/R/share/dictionaries mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/R/share/encodings mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/R/share/java mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/R/share/licenses mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/R/share/make mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/R/share/Rd mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/R/share/Rd/macros mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/R/share/sh mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/R/share/texmf mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/R/share/texmf/bibtex mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/R/share/texmf/bibtex/bib mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/R/share/texmf/bibtex/bst mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/R/share/texmf/tex mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/R/share/texmf/tex/latex gmake[1]: Leaving directory '/Users/pbulk/build/math/R/work/R-4.5.2/share' gmake[1]: Entering directory '/Users/pbulk/build/math/R/work/R-4.5.2/src' gmake[2]: Entering directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/scripts' mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/bin mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/R/bin gmake[2]: Leaving directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/scripts' gmake[2]: Entering directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/include' mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/R/include gmake[3]: Entering directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/include/R_ext' mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/R/include/R_ext gmake[3]: Leaving directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/include/R_ext' gmake[2]: Leaving directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/include' gmake[2]: Entering directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/extra' gmake[3]: Entering directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/extra/blas' gmake[3]: Nothing to be done for 'install'. gmake[3]: Leaving directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/extra/blas' gmake[3]: Entering directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/extra/tre' gmake[3]: Nothing to be done for 'install'. gmake[3]: Leaving directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/extra/tre' gmake[3]: Entering directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/extra/tzone' gmake[3]: Nothing to be done for 'install'. gmake[3]: Leaving directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/extra/tzone' gmake[3]: Entering directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/extra/xdr' gmake[3]: Nothing to be done for 'install'. gmake[3]: Leaving directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/extra/xdr' gmake[3]: Entering directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/extra/intl' gmake[3]: Nothing to be done for 'install'. gmake[3]: Leaving directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/extra/intl' gmake[2]: Leaving directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/extra' gmake[2]: Entering directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/appl' gmake[2]: Nothing to be done for 'install'. gmake[2]: Leaving directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/appl' gmake[2]: Entering directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/nmath' gmake[2]: Nothing to be done for 'install'. gmake[2]: Leaving directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/nmath' gmake[2]: Entering directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/unix' clang -std=gnu2x -I. -I../../src/include -I../../src/include -DPNG_NO_ASSEMBLER_CODE -I/opt/pkg/include -I/opt/pkg/include/glib-2.0 -I/opt/pkg/include/gio-unix-2.0 -I/opt/pkg/lib/glib-2.0/include -D_REENTRANT -I/opt/pkg/include/freetype2 -I/opt/pkg/include/harfbuzz -I/opt/pkg/include/ncurses -DLDAP_DEPRECATED -I/opt/pkg/include/libxml2 -DHAVE_CONFIG_H -pipe -Os -I/opt/pkg/include -I/opt/pkg/include/glib-2.0 -I/opt/pkg/include/gio-unix-2.0 -I/opt/pkg/lib/glib-2.0/include -D_REENTRANT -I/opt/pkg/include/freetype2 -I/opt/pkg/include/harfbuzz -I/opt/pkg/include/ncurses -DLDAP_DEPRECATED -I/opt/pkg/include/libxml2 -L/opt/pkg/lib/R/lib -L/opt/pkg/lib -DR_HOME='"/opt/pkg/lib/R"' \ -o Rscript ./Rscript.c clang: warning: argument unused during compilation: '-specs=/Users/pbulk/build/math/R/work/.cwrapper/specs.pkgsrc' [-Wunused-command-line-argument] ld: warning: search path '/Users/pbulk/build/math/R/work/.buildlink/lib/R/lib' not found mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/pkgconfig gmake[2]: Leaving directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/unix' gmake[2]: Entering directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/main' mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/R/bin/exec gmake[3]: Entering directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/main' gmake[3]: Leaving directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/main' gmake[3]: Entering directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/main' mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/R/lib gmake[3]: Leaving directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/main' gmake[2]: Leaving directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/main' gmake[2]: Entering directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/modules' gmake[3]: Entering directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/modules/internet' mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/R/modules gmake[3]: Leaving directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/modules/internet' gmake[3]: Entering directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/modules/lapack' gmake[3]: Leaving directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/modules/lapack' gmake[2]: Leaving directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/modules' gmake[2]: Entering directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/library' mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/R/library installing packages ... building HTML index ... gmake[2]: Leaving directory '/Users/pbulk/build/math/R/work/R-4.5.2/src/library' gmake[1]: Leaving directory '/Users/pbulk/build/math/R/work/R-4.5.2/src' gmake[1]: Entering directory '/Users/pbulk/build/math/R/work/R-4.5.2/tests' gmake[1]: Nothing to be done for 'install'. gmake[1]: Leaving directory '/Users/pbulk/build/math/R/work/R-4.5.2/tests' gmake[1]: Entering directory '/Users/pbulk/build/math/R/work/R-4.5.2/doc/manual' mkdir /Users/pbulk/build/math/R/work/.destdir/opt/pkg/info /usr/bin/install -c -m 644 "./dir" "/Users/pbulk/build/math/R/work/.destdir/opt/pkg/info" installing R info pages ... updating '/opt/pkg/info/dir' ... gmake[1]: Leaving directory '/Users/pbulk/build/math/R/work/R-4.5.2/doc/manual' /usr/bin/find /Users/pbulk/build/math/R/work/.destdir/opt/pkg -name "*.so" | while read lib; do libname=`basename ${lib}`; libdir=`dirname ${lib} | sed -e 's,/Users/pbulk/build/math/R/work/.destdir,,'`; install_name_tool -id ${libdir}/${libname} ${lib}; done /bin/rm -f /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/R/library/survival/NEWS.Rd.orig => Automatic manual page handling => Generating post-install file lists => Checking file-check results for R-4.5.2 ERROR: ************************************************************ ERROR: The following files are in /Users/pbulk/build/math/R/work/.destdir/opt/pkg but not in the PLIST: ERROR: /Users/pbulk/build/math/R/work/.destdir/opt/pkg/lib/R/share/zoneinfo/America/Coyhaique *** Error code 1 Stop. bmake[1]: stopped making "stage-install" in /Volumes/data/jenkins/workspace/pkgsrc-macos-trunk-arm64/math/R *** Error code 1 Stop. bmake: stopped making "stage-install" in /Volumes/data/jenkins/workspace/pkgsrc-macos-trunk-arm64/math/R