=> "/opt/pkg/bin/bmake" ["-C", "/Volumes/data/jenkins/workspace/pkgsrc-macos-trunk-arm64/biology/racon", "all", "BATCH=1", "DEPENDS_TARGET=/nonexistent"] ===> Building for racon-1.4.3 [ 6%] Building CXX object vendor/spoa/CMakeFiles/spoa.dir/src/alignment_engine.cpp.o [ 6%] Building CXX object vendor/thread_pool/CMakeFiles/thread_pool.dir/src/thread_pool.cpp.o [ 9%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/adler32.c.o In file included from /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/adler32.c:8: /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.h:163:11: warning: 'OS_CODE' macro redefined [-Wmacro-redefined] 163 | # define OS_CODE 19 | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.h:134:11: note: previous definition is here 134 | # define OS_CODE 7 | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/adler32.c:63:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 63 | uLong ZEXPORT adler32_z(adler, buf, len) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/adler32.c:134:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 134 | uLong ZEXPORT adler32(adler, buf, len) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/adler32.c:143:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 143 | local uLong adler32_combine_(adler1, adler2, len2) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/adler32.c:172:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 172 | uLong ZEXPORT adler32_combine(adler1, adler2, len2) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/adler32.c:180:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 180 | uLong ZEXPORT adler32_combine64(adler1, adler2, len2) | ^ 6 warnings generated. [ 12%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/compress.c.o /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/compress.c:22:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 22 | int ZEXPORT compress2 (dest, destLen, source, sourceLen, level) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/compress.c:68:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 68 | int ZEXPORT compress (dest, destLen, source, sourceLen) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/compress.c:81:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 81 | uLong ZEXPORT compressBound (sourceLen) | ^ 3 warnings generated. [ 15%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/crc32.c.o In file included from /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:31: /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.h:163:11: warning: 'OS_CODE' macro redefined [-Wmacro-redefined] 163 | # define OS_CODE 19 | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.h:134:11: note: previous definition is here 134 | # define OS_CODE 7 | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:202:23: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 202 | unsigned long ZEXPORT crc32_z(crc, buf, len) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:237:23: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 237 | unsigned long ZEXPORT crc32(crc, buf, len) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:266:21: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 266 | local unsigned long crc32_little(crc, buf, len) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:306:21: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 306 | local unsigned long crc32_big(crc, buf, len) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:344:21: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 344 | local unsigned long gf2_matrix_times(mat, vec) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:361:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 361 | local void gf2_matrix_square(square, mat) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:372:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 372 | local uLong crc32_combine_(crc1, crc2, len2) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:428:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 428 | uLong ZEXPORT crc32_combine(crc1, crc2, len2) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:436:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 436 | uLong ZEXPORT crc32_combine64(crc1, crc2, len2) | ^ 10 warnings generated. [ 18%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/deflate.c.o In file included from /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:52: In file included from /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.h:16: /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.h:163:11: warning: 'OS_CODE' macro redefined [-Wmacro-redefined] 163 | # define OS_CODE 19 | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.h:134:11: note: previous definition is here 134 | # define OS_CODE 7 | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:201:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 201 | local void slide_hash(s) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:228:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 228 | int ZEXPORT deflateInit_(strm, level, version, stream_size) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:240:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 240 | int ZEXPORT deflateInit2_(strm, level, method, windowBits, memLevel, strategy, | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:353:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 353 | local int deflateStateCheck (strm) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:376:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 376 | int ZEXPORT deflateSetDictionary (strm, dictionary, dictLength) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:445:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 445 | int ZEXPORT deflateGetDictionary (strm, dictionary, dictLength) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:467:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 467 | int ZEXPORT deflateResetKeep (strm) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:505:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 505 | int ZEXPORT deflateReset (strm) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:517:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 517 | int ZEXPORT deflateSetHeader (strm, head) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:528:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 528 | int ZEXPORT deflatePending (strm, pending, bits) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:542:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 542 | int ZEXPORT deflatePrime (strm, bits, value) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:568:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 568 | int ZEXPORT deflateParams(strm, level, strategy) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:617:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 617 | int ZEXPORT deflateTune(strm, good_length, max_lazy, nice_length, max_chain) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:652:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 652 | uLong ZEXPORT deflateBound(strm, sourceLen) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:716:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 716 | local void putShortMSB (s, b) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:730:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 730 | local void flush_pending(strm) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:763:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 763 | int ZEXPORT deflate (strm, flush) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1076:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1076 | int ZEXPORT deflateEnd (strm) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1102:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1102 | int ZEXPORT deflateCopy (dest, source) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1164:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1164 | local unsigned read_buf(strm, buf, size) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1194:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1194 | local void lm_init (s) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1236:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1236 | local uInt longest_match(s, cur_match) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1482:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1482 | local void fill_window(s) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1643:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1643 | local block_state deflate_stored(s, flush) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1824:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1824 | local block_state deflate_fast(s, flush) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1926:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1926 | local block_state deflate_slow(s, flush) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:2057:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 2057 | local block_state deflate_rle(s, flush) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:2130:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 2130 | local block_state deflate_huff(s, flush) | ^ [ 21%] Building CXX object vendor/spoa/CMakeFiles/spoa.dir/src/graph.cpp.o 29 warnings generated. [ 24%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/gzclose.c.o [ 27%] Linking CXX static library lib/libthread_pool.a /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzclose.c:11:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 11 | int ZEXPORT gzclose(file) | ^ 1 warning generated. [ 30%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/gzlib.c.o [ 30%] Built target thread_pool [ 33%] Building CXX object vendor/edlib/CMakeFiles/edlib_static.dir/edlib/src/edlib.cpp.o /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:75:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 75 | local void gz_reset(state) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:91:14: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 91 | local gzFile gz_open(path, fd, mode) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:270:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 270 | gzFile ZEXPORT gzopen(path, mode) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:278:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 278 | gzFile ZEXPORT gzopen64(path, mode) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:286:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 286 | gzFile ZEXPORT gzdopen(fd, mode) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:316:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 316 | int ZEXPORT gzbuffer(file, size) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:343:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 343 | int ZEXPORT gzrewind(file) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:366:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 366 | z_off64_t ZEXPORT gzseek64(file, offset, whence) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:443:17: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 443 | z_off_t ZEXPORT gzseek(file, offset, whence) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:455:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 455 | z_off64_t ZEXPORT gztell64(file) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:472:17: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 472 | z_off_t ZEXPORT gztell(file) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:482:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 482 | z_off64_t ZEXPORT gzoffset64(file) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:505:17: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 505 | z_off_t ZEXPORT gzoffset(file) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:515:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 515 | int ZEXPORT gzeof(file) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:532:22: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 532 | const char * ZEXPORT gzerror(file, errnum) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:553:14: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 553 | void ZEXPORT gzclearerr(file) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:579:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 579 | void ZLIB_INTERNAL gz_error(state, err, msg) | ^ 17 warnings generated. [ 36%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/gzread.c.o /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c:21:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 21 | local int gz_load(state, buf, len, have) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c:56:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 56 | local int gz_avail(state) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c:91:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 91 | local int gz_look(state) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c:175:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 175 | local int gz_decomp(state) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c:229:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 229 | local int gz_fetch(state) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c:259:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 259 | local int gz_skip(state, len) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c:294:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 294 | local z_size_t gz_read(state, buf, len) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c:375:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 375 | int ZEXPORT gzread(file, buf, len) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c:411:18: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 411 | z_size_t ZEXPORT gzfread(buf, size, nitems, file) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c:447:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 447 | int ZEXPORT gzgetc(file) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c:476:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 476 | int ZEXPORT gzgetc_(file) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c:483:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 483 | int ZEXPORT gzungetc(c, file) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c:543:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 543 | char * ZEXPORT gzgets(file, buf, len) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c:607:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 607 | int ZEXPORT gzdirect(file) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c:627:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 627 | int ZEXPORT gzclose_r(file) | ^ 15 warnings generated. /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/graph.cpp:701:17: warning: format specifies type 'unsigned long' but the argument has type 'int64_t' (aka 'long long') [-Wformat] 700 | printf(" %u -> %u [label = \"%lu\"", i, edge->end_node_id_, | ~~~ | %lld 701 | edge->total_weight_); | ^~~~~~~~~~~~~~~~~~~ [ 39%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/gzwrite.c.o /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c:17:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 17 | local int gz_init(state) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c:73:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 73 | local int gz_comp(state, flush) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c:145:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 145 | local int gz_zero(state, len) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c:178:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 178 | local z_size_t gz_write(state, buf, len) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c:246:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 246 | int ZEXPORT gzwrite(file, buf, len) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c:274:18: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 274 | z_size_t ZEXPORT gzfwrite(buf, size, nitems, file) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c:304:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 304 | int ZEXPORT gzputc(file, c) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c:352:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 352 | int ZEXPORT gzputs(file, str) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c:553:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 553 | int ZEXPORT gzflush(file, flush) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c:585:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 585 | int ZEXPORT gzsetparams(file, level, strategy) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c:627:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 627 | int ZEXPORT gzclose_w(file) | ^ 11 warnings generated. [ 42%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/inflate.c.o In file included from /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:83: /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.h:163:11: warning: 'OS_CODE' macro redefined [-Wmacro-redefined] 163 | # define OS_CODE 19 | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.h:134:11: note: previous definition is here 134 | # define OS_CODE 7 | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:105:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 105 | local int inflateStateCheck(strm) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:119:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 119 | int ZEXPORT inflateResetKeep(strm) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:144:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 144 | int ZEXPORT inflateReset(strm) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:157:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 157 | int ZEXPORT inflateReset2(strm, windowBits) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:195:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 195 | int ZEXPORT inflateInit2_(strm, windowBits, version, stream_size) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:239:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 239 | int ZEXPORT inflateInit_(strm, version, stream_size) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:247:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 247 | int ZEXPORT inflatePrime(strm, bits, value) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:278:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 278 | local void fixedtables(state) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:396:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 396 | local int updatewindow(strm, end, copy) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:622:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 622 | int ZEXPORT inflate(strm, flush) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:1277:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1277 | int ZEXPORT inflateEnd(strm) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:1291:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1291 | int ZEXPORT inflateGetDictionary(strm, dictionary, dictLength) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:1314:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1314 | int ZEXPORT inflateSetDictionary(strm, dictionary, dictLength) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:1349:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1349 | int ZEXPORT inflateGetHeader(strm, head) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:1377:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1377 | local unsigned syncsearch(have, buf, len) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:1400:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1400 | int ZEXPORT inflateSync(strm) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:1451:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1451 | int ZEXPORT inflateSyncPoint(strm) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:1461:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1461 | int ZEXPORT inflateCopy(dest, source) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:1508:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1508 | int ZEXPORT inflateUndermine(strm, subvert) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:1526:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1526 | int ZEXPORT inflateValidate(strm, check) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:1541:14: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1541 | long ZEXPORT inflateMark(strm) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:1554:23: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1554 | unsigned long ZEXPORT inflateCodesUsed(strm) | ^ 1 warning generated. 23 warnings generated. [ 45%] Building CXX object vendor/spoa/CMakeFiles/spoa.dir/src/simd_alignment_engine.cpp.o [ 48%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/infback.c.o [ 51%] Linking CXX static library ../../lib/libedlib_static.a In file included from /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/infback.c:13: /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.h:163:11: warning: 'OS_CODE' macro redefined [-Wmacro-redefined] 163 | # define OS_CODE 19 | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.h:134:11: note: previous definition is here 134 | # define OS_CODE 7 | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/infback.c:28:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 28 | int ZEXPORT inflateBackInit_(strm, windowBits, window, version, stream_size) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/infback.c:82:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 82 | local void fixedtables(state) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/infback.c:250:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 250 | int ZEXPORT inflateBack(strm, in, in_desc, out, out_desc) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/infback.c:631:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 631 | int ZEXPORT inflateBackEnd(strm) | ^ 5 warnings generated. [ 54%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/inftrees.c.o [ 54%] Built target edlib_static [ 57%] Building CXX object vendor/logger/CMakeFiles/logger.dir/src/logger.cpp.o In file included from /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inftrees.c:6: /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.h:163:11: warning: 'OS_CODE' macro redefined [-Wmacro-redefined] 163 | # define OS_CODE 19 | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.h:134:11: note: previous definition is here 134 | # define OS_CODE 7 | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inftrees.c:32:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 32 | int ZLIB_INTERNAL inflate_table(type, lens, codes, table, bits, work) | ^ 2 warnings generated. [ 60%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/inffast.c.o In file included from /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp:11: /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/immintrin.h:14:2: error: "This header is only meant to be used on x86 and x64 architecture" 14 | #error "This header is only meant to be used on x86 and x64 architecture" | ^ In file included from /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp:11: In file included from /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/immintrin.h:17: In file included from /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/x86gprintrin.h:14: /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/hresetintrin.h:42:27: error: invalid input constraint 'a' in asm 42 | __asm__ ("hreset $0" :: "a"(__eax)); | ^ In file included from /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp:11: In file included from /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/immintrin.h:17: In file included from /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/x86gprintrin.h:26: /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/crc32intrin.h:33:10: error: use of undeclared identifier '__builtin_ia32_crc32qi' 33 | return __builtin_ia32_crc32qi(__C, __D); | ^ /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/crc32intrin.h:53:10: error: use of undeclared identifier '__builtin_ia32_crc32hi'; did you mean '__builtin_arm_crc32h'? 53 | return __builtin_ia32_crc32hi(__C, __D); | ^ /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/crc32intrin.h:73:10: error: use of undeclared identifier '__builtin_ia32_crc32si' 73 | return __builtin_ia32_crc32si(__C, __D); | ^ In file included from /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp:11: In file included from /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/immintrin.h:17: In file included from /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/x86gprintrin.h:34: /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/raointintrin.h:39:3: error: use of undeclared identifier '__builtin_ia32_aadd32'; did you mean '__builtin_arm_addg'? 39 | __builtin_ia32_aadd32((int *)__A, __B); | ^ /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/raointintrin.h:39:3: error: argument to '__builtin_arm_addg' must be a constant integer 39 | __builtin_ia32_aadd32((int *)__A, __B); | ^ ~~~ /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/raointintrin.h:61:3: error: use of undeclared identifier '__builtin_ia32_aand32' 61 | __builtin_ia32_aand32((int *)__A, __B); | ^ /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/raointintrin.h:83:3: error: use of undeclared identifier '__builtin_ia32_aor32' 83 | __builtin_ia32_aor32((int *)__A, __B); | ^ /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/raointintrin.h:105:3: error: use of undeclared identifier '__builtin_ia32_axor32' 105 | __builtin_ia32_axor32((int *)__A, __B); | ^ In file included from /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp:11: In file included from /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/immintrin.h:20: /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/mmintrin.h:14:2: error: "This header is only meant to be used on x86 and x64 architecture" 14 | #error "This header is only meant to be used on x86 and x64 architecture" | ^ In file included from /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inffast.c:6: /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.h:163:11: warning: 'OS_CODE' macro redefined [-Wmacro-redefined] 163 | # define OS_CODE 19 | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.h:134:11: note: previous definition is here 134 | # define OS_CODE 7 | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inffast.c:50:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 50 | void ZLIB_INTERNAL inflate_fast(strm, start) | ^ /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/mmintrin.h:39:3: error: use of undeclared identifier '__builtin_ia32_emms'; did you mean '__builtin_isless'? 39 | __builtin_ia32_emms(); | ^ /Applications/Xcode-16.4.0.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.5.sdk/usr/include/c++/v1/__math/traits.h:157:10: note: '__builtin_isless' declared here 157 | return __builtin_isless((type)__x, (type)__y); | ^ In file included from /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp:11: In file included from /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/immintrin.h:20: /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/mmintrin.h:39:23: error: too few arguments to function call, expected 2, have 0 39 | __builtin_ia32_emms(); | ~~~~~~~~~~~~~~~~~~~~^ /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/mmintrin.h:56:19: error: use of undeclared identifier '__builtin_ia32_vec_init_v2si' 56 | return (__m64)__builtin_ia32_vec_init_v2si(__i, 0); | ^ 2 warnings generated. /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/mmintrin.h:73:12: error: use of undeclared identifier '__builtin_ia32_vec_ext_v2si' 73 | return __builtin_ia32_vec_ext_v2si((__v2si)__m, 0); | ^ /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/mmintrin.h:130:19: error: use of undeclared identifier '__builtin_ia32_packsswb' 130 | return (__m64)__builtin_ia32_packsswb((__v4hi)__m1, (__v4hi)__m2); | ^ [ 63%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/trees.c.o /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/mmintrin.h:155:19: error: use of undeclared identifier '__builtin_ia32_packssdw' 155 | return (__m64)__builtin_ia32_packssdw((__v2si)__m1, (__v2si)__m2); | ^ /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/mmintrin.h:180:19: error: use of undeclared identifier '__builtin_ia32_packuswb' 180 | return (__m64)__builtin_ia32_packuswb((__v4hi)__m1, (__v4hi)__m2); | ^ /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/mmintrin.h:207:19: error: use of undeclared identifier '__builtin_ia32_punpckhbw' 207 | return (__m64)__builtin_ia32_punpckhbw((__v8qi)__m1, (__v8qi)__m2); | ^ fatal error: too many errors emitted, stopping now [-ferror-limit=] In file included from /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:37: In file included from /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.h:16: /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.h:163:11: warning: 'OS_CODE' macro redefined [-Wmacro-redefined] 163 | # define OS_CODE 19 | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.h:134:11: note: previous definition is here 134 | # define OS_CODE 7 | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:379:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 379 | void ZLIB_INTERNAL _tr_init(s) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:407:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 407 | local void init_block(s) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:451:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 451 | local void pqdownheap(s, tree, k) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:486:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 486 | local void gen_bitlen(s, desc) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:572:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 572 | local void gen_codes (tree, max_code, bl_count) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:615:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 615 | local void build_tree(s, desc) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:703:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 703 | local void scan_tree (s, tree, max_code) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:748:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 748 | local void send_tree (s, tree, max_code) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:799:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 799 | local int build_bl_tree(s) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:834:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 834 | local void send_all_trees(s, lcodes, dcodes, blcodes) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:863:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 863 | void ZLIB_INTERNAL _tr_stored_block(s, buf, stored_len, last) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:886:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 886 | void ZLIB_INTERNAL _tr_flush_bits(s) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:896:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 896 | void ZLIB_INTERNAL _tr_align(s) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:911:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 911 | void ZLIB_INTERNAL _tr_flush_block(s, buf, stored_len, last) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:1014:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1014 | int ZLIB_INTERNAL _tr_tally (s, dist, lc) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:1064:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1064 | local void compress_block(s, ltree, dtree) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:1124:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1124 | local int detect_data_type(s) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:1158:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1158 | local unsigned bi_reverse(code, len) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:1173:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1173 | local void bi_flush(s) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:1190:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1190 | local void bi_windup(s) | ^ 21 warnings generated. [ 66%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/uncompr.c.o /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/uncompr.c:27:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 27 | int ZEXPORT uncompress2 (dest, destLen, source, sourceLen) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/uncompr.c:86:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 86 | int ZEXPORT uncompress (dest, destLen, source, sourceLen) | ^ 2 warnings generated. 20 errors generated. --- vendor/spoa/CMakeFiles/spoa.dir/src/simd_alignment_engine.cpp.o --- *** [vendor/spoa/CMakeFiles/spoa.dir/src/simd_alignment_engine.cpp.o] Error code 1 bmake[2]: stopped making "vendor/spoa/CMakeFiles/spoa.dir/build" in /var/tmp/work/biology/racon/work/racon-v1.4.3/cmake-pkgsrc-build bmake[2]: 1 error bmake[2]: stopped making "vendor/spoa/CMakeFiles/spoa.dir/build" in /var/tmp/work/biology/racon/work/racon-v1.4.3/cmake-pkgsrc-build --- vendor/spoa/CMakeFiles/spoa.dir/all --- *** [vendor/spoa/CMakeFiles/spoa.dir/all] Error code 2 bmake[1]: stopped making "all" in /var/tmp/work/biology/racon/work/racon-v1.4.3/cmake-pkgsrc-build [ 69%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/zutil.c.o --- vendor/logger/CMakeFiles/logger.dir/all --- *** [vendor/logger/CMakeFiles/logger.dir/all] Error code 6 bmake[1]: stopped making "all" in /var/tmp/work/biology/racon/work/racon-v1.4.3/cmake-pkgsrc-build In file included from /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.c:8: /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.h:163:11: warning: 'OS_CODE' macro redefined [-Wmacro-redefined] 163 | # define OS_CODE 19 | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.h:134:11: note: previous definition is here 134 | # define OS_CODE 7 | ^ In file included from /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.c:10: In file included from /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzguts.h:21: In file included from /Applications/Xcode-16.4.0.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.5.sdk/usr/include/stdio.h:61: /Applications/Xcode-16.4.0.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.5.sdk/usr/include/_stdio.h:318:7: error: expected identifier or '(' 318 | FILE *fdopen(int, const char *) __DARWIN_ALIAS_STARTING(__MAC_10_6, __IPHONE_2_0, __DARWIN_ALIAS(fdopen)); | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.h:140:33: note: expanded from macro 'fdopen' 140 | # define fdopen(fd,mode) NULL /* No fdopen() */ | ^ /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/__stddef_null.h:26:16: note: expanded from macro 'NULL' 26 | #define NULL ((void*)0) | ^ In file included from /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.c:10: In file included from /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzguts.h:21: In file included from /Applications/Xcode-16.4.0.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.5.sdk/usr/include/stdio.h:61: /Applications/Xcode-16.4.0.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.5.sdk/usr/include/_stdio.h:318:7: error: expected ')' /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.h:140:33: note: expanded from macro 'fdopen' 140 | # define fdopen(fd,mode) NULL /* No fdopen() */ | ^ /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/__stddef_null.h:26:16: note: expanded from macro 'NULL' 26 | #define NULL ((void*)0) | ^ /Applications/Xcode-16.4.0.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.5.sdk/usr/include/_stdio.h:318:7: note: to match this '(' /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.h:140:33: note: expanded from macro 'fdopen' 140 | # define fdopen(fd,mode) NULL /* No fdopen() */ | ^ /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/__stddef_null.h:26:15: note: expanded from macro 'NULL' 26 | #define NULL ((void*)0) | ^ In file included from /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.c:10: In file included from /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzguts.h:21: In file included from /Applications/Xcode-16.4.0.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.5.sdk/usr/include/stdio.h:61: /Applications/Xcode-16.4.0.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.5.sdk/usr/include/_stdio.h:318:7: error: expected ')' 318 | FILE *fdopen(int, const char *) __DARWIN_ALIAS_STARTING(__MAC_10_6, __IPHONE_2_0, __DARWIN_ALIAS(fdopen)); | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.h:140:33: note: expanded from macro 'fdopen' 140 | # define fdopen(fd,mode) NULL /* No fdopen() */ | ^ /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/__stddef_null.h:26:22: note: expanded from macro 'NULL' 26 | #define NULL ((void*)0) | ^ /Applications/Xcode-16.4.0.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX15.5.sdk/usr/include/_stdio.h:318:7: note: to match this '(' /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.h:140:33: note: expanded from macro 'fdopen' 140 | # define fdopen(fd,mode) NULL /* No fdopen() */ | ^ /System/Volumes/Data/Applications/Xcode-16.4.0.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/17/include/__stddef_null.h:26:14: note: expanded from macro 'NULL' 26 | #define NULL ((void*)0) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.c:133:22: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 133 | const char * ZEXPORT zError(err) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.c:305:22: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 305 | voidpf ZLIB_INTERNAL zcalloc (opaque, items, size) | ^ /var/tmp/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.c:315:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 315 | void ZLIB_INTERNAL zcfree (opaque, ptr) | ^ 4 warnings and 3 errors generated. --- vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/zutil.c.o --- *** [vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/zutil.c.o] Error code 1 bmake[2]: stopped making "vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/build" in /var/tmp/work/biology/racon/work/racon-v1.4.3/cmake-pkgsrc-build bmake[2]: 1 error bmake[2]: stopped making "vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/build" in /var/tmp/work/biology/racon/work/racon-v1.4.3/cmake-pkgsrc-build --- vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/all --- *** [vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/all] Error code 2 bmake[1]: stopped making "all" in /var/tmp/work/biology/racon/work/racon-v1.4.3/cmake-pkgsrc-build bmake[1]: 3 errors bmake[1]: stopped making "all" in /var/tmp/work/biology/racon/work/racon-v1.4.3/cmake-pkgsrc-build *** [all] Error code 2 bmake: stopped making "all" in /var/tmp/work/biology/racon/work/racon-v1.4.3/cmake-pkgsrc-build bmake: 1 error bmake: stopped making "all" in /var/tmp/work/biology/racon/work/racon-v1.4.3/cmake-pkgsrc-build *** Error code 2 Stop. bmake[1]: stopped making "all" in /Volumes/data/jenkins/workspace/pkgsrc-macos-trunk-arm64/biology/racon *** Error code 1 Stop. bmake: stopped making "all" in /Volumes/data/jenkins/workspace/pkgsrc-macos-trunk-arm64/biology/racon