+ case "${usergroup_phase}" in
+ local run_cmd
+ run_cmd=run_su
+ shift
+ run_su /opt/local/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/ncbi-bin-20120620/work.log
+ su pbulk -c '"$@"' make /opt/local/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/ncbi-bin-20120620/work.log
WARNING: [license.mk] Every package should define a LICENSE.
=> Checksum RMD160 OK for ncbi-20120620/ncbi.tar.gz
=> Checksum SHA512 OK for ncbi-20120620/ncbi.tar.gz
===> Installing dependencies for ncbi-bin-20120620
==========================================================================
The following variables will affect the build process of this package,
ncbi-bin-20120620.  Their current value is shown below:

        * JPEG_DEFAULT = libjpeg-turbo
        * MOTIFBASE (defined)
        * MOTIF_TYPE = motif

Based on these variables, the following variables have been set:

        * JPEGBASE (defined, but empty)
        * JPEG_TYPE = libjpeg-turbo

You may want to abort the process now with CTRL-C and change the value
of variables in the first group before continuing.  Be sure to run
`/opt/local/bin/bmake clean' after the changes.
==========================================================================
=> Tool dependency cwrappers>=20150314: found cwrappers-20220403
=> Tool dependency checkperms>=1.1: found checkperms-1.12
=> Build dependency gcc13>=13.1.0: found gcc13-13.3.0
=> Full dependency gcc13-libs>=13.2.0: found gcc13-libs-13.3.0
=> Full dependency libX11>=1.1: found libX11-1.8.12
=> Full dependency motif>=2.3.8nb4: found motif-2.3.8nb4
=> Build dependency xbitmaps>=1.0: found xbitmaps-1.1.3
=> Build dependency xcb-proto>=1.4: found xcb-proto-1.17.0nb5
=> Build dependency xorgproto>=2016.1: found xorgproto-2024.1
=> Full dependency brotli>=1.0.1: found brotli-1.1.0
=> Full dependency bzip2>=1.0.1: found bzip2-1.0.8
=> Full dependency expat>=1.95.7: found expat-2.7.1
=> Full dependency fontconfig>=2.11.91: found fontconfig-2.15.0
=> Full dependency freetype2>=2.13.0: found freetype2-2.13.3
=> Full dependency gettext-lib>=0.22: found gettext-lib-0.22.5
=> Full dependency libiconv>=1.9.1: found libiconv-1.17
=> Full dependency libICE>=0.99.1: found libICE-1.1.2
=> Full dependency libSM>=0.99.2: found libSM-1.2.6
=> Full dependency libXau>=1.0: found libXau-1.0.12
=> Full dependency libXaw>=1.0.5: found libXaw-1.0.16
=> Full dependency libXdmcp>=0.99: found libXdmcp-1.1.5
=> Full dependency libXext>=0.99.0: found libXext-1.3.6
=> Full dependency libXft>=2.1.10: found libXft-2.3.9
=> Full dependency libXmu>=1.0.0: found libXmu-1.2.1
=> Full dependency libXpm>=3.5.4.2: found libXpm-3.5.17
=> Full dependency libXrender>=0.9.2: found libXrender-0.9.12
=> Full dependency libXt>=1.0.0: found libXt-1.3.1
=> Full dependency libjpeg-turbo>=1.1.0: found libjpeg-turbo-3.1.0nb1
=> Full dependency libxcb>=1.6: found libxcb-1.17.0
=> Full dependency png>=1.2.4: found png-1.6.48
=> Full dependency zlib>=1.1.4: found zlib-1.3.1
===> Overriding tools for ncbi-bin-20120620
===> Extracting for ncbi-bin-20120620
===> Patching for ncbi-bin-20120620
=> Applying pkgsrc patches for ncbi-bin-20120620
=> Verifying /data/jenkins/workspace/pkgsrc-trunk-x86_64/wip/ncbi-bin/patches/patch-aa
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-trunk-x86_64/wip/ncbi-bin/patches/patch-aa
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-aa,v 1.2 2006/03/29 20:40:38 mchittur Exp $
|
|--- make/makedis.csh.orig	2006-03-28 21:24:29.000000000 +0000
|+++ make/makedis.csh
--------------------------
Patching file make/makedis.csh using Plan A...
Hunk #1 succeeded at 245 (offset 18 lines).
done
===> Creating toolchain wrappers for ncbi-bin-20120620
/usr/bin/sed  -e '/^#/d'  -e 's,@LINK_ARCH_DEFAULT@,link_arch64,g'  -e 's,@LINK_LIBGCC_DEFAULT@,link_libgcc_arch64,g'  -e 's,@LIBGCC_PREFIX@,/opt/local/gcc13/x86_64-sun-solaris2.11,g'  < ../../extra/gcc13-libs/files/specs.pkgsrc  > /home/pbulk/build/wip/ncbi-bin/work/.cwrapper/specs.pkgsrc
===> Configuring for ncbi-bin-20120620