[*] cc -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include CMakeCCompilerId.c <.> /home/pbulk/build/biology/kallisto/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/kallisto/work/.buildlink/include CMakeCCompilerId.c -specs=/home/pbulk/build/biology/kallisto/work/.cwrapper/specs.pkgsrc -gdwarf-2 [*] cc -print-sysroot <.> /home/pbulk/build/biology/kallisto/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -print-sysroot -specs=/home/pbulk/build/biology/kallisto/work/.cwrapper/specs.pkgsrc -gdwarf-2 -I/home/pbulk/build/biology/kallisto/work/.buildlink/include [*] c++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include CMakeCXXCompilerId.cpp <.> /home/pbulk/build/biology/kallisto/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/kallisto/work/.buildlink/include CMakeCXXCompilerId.cpp -specs=/home/pbulk/build/biology/kallisto/work/.cwrapper/specs.pkgsrc [*] c++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -E -x c++-header /opt/local/share/cmake-4.1/Modules/CXX-DetectStdlib.h -o - <.> /home/pbulk/build/biology/kallisto/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/kallisto/work/.buildlink/include -E -x c++-header /opt/local/share/cmake-4.1/Modules/CXX-DetectStdlib.h -o - -specs=/home/pbulk/build/biology/kallisto/work/.cwrapper/specs.pkgsrc [*] c++ -print-sysroot <.> /home/pbulk/build/biology/kallisto/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -print-sysroot -specs=/home/pbulk/build/biology/kallisto/work/.cwrapper/specs.pkgsrc -I/home/pbulk/build/biology/kallisto/work/.buildlink/include [*] cc -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -v -o CMakeFiles/cmTC_1da5f.dir/CMakeCCompilerABI.c.o -c /opt/local/share/cmake-4.1/Modules/CMakeCCompilerABI.c <.> /home/pbulk/build/biology/kallisto/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/kallisto/work/.buildlink/include -v -o CMakeFiles/cmTC_1da5f.dir/CMakeCCompilerABI.c.o -c /opt/local/share/cmake-4.1/Modules/CMakeCCompilerABI.c -specs=/home/pbulk/build/biology/kallisto/work/.cwrapper/specs.pkgsrc -gdwarf-2 [*] cc -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -L/opt/local/lib -Wl,-R/opt/local/lib -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 -v CMakeFiles/cmTC_1da5f.dir/CMakeCCompilerABI.c.o -o cmTC_1da5f <.> /home/pbulk/build/biology/kallisto/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/kallisto/work/.buildlink/include -L/home/pbulk/build/biology/kallisto/work/.buildlink/lib -Wl,-rpath,/opt/local/lib -v CMakeFiles/cmTC_1da5f.dir/CMakeCCompilerABI.c.o -o cmTC_1da5f -specs=/home/pbulk/build/biology/kallisto/work/.cwrapper/specs.pkgsrc -gdwarf-2 -lumem [*] c++ -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -v -o CMakeFiles/cmTC_ac697.dir/CMakeCXXCompilerABI.cpp.o -c /opt/local/share/cmake-4.1/Modules/CMakeCXXCompilerABI.cpp <.> /home/pbulk/build/biology/kallisto/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/kallisto/work/.buildlink/include -v -o CMakeFiles/cmTC_ac697.dir/CMakeCXXCompilerABI.cpp.o -c /opt/local/share/cmake-4.1/Modules/CMakeCXXCompilerABI.cpp -specs=/home/pbulk/build/biology/kallisto/work/.cwrapper/specs.pkgsrc [*] c++ -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -L/opt/local/lib -Wl,-R/opt/local/lib -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 -v CMakeFiles/cmTC_ac697.dir/CMakeCXXCompilerABI.cpp.o -o cmTC_ac697 <.> /home/pbulk/build/biology/kallisto/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/kallisto/work/.buildlink/include -L/home/pbulk/build/biology/kallisto/work/.buildlink/lib -Wl,-rpath,/opt/local/lib -v CMakeFiles/cmTC_ac697.dir/CMakeCXXCompilerABI.cpp.o -o cmTC_ac697 -specs=/home/pbulk/build/biology/kallisto/work/.cwrapper/specs.pkgsrc -lumem [*] c++ -DCOMPILER_SUPPORTS_CXX17 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -std=c++17 -o CMakeFiles/cmTC_a9f36.dir/src.cxx.o -c /home/pbulk/build/biology/kallisto/work/kallisto-0.51.1/CMakeFiles/CMakeScratch/TryCompile-veau1L/src.cxx <.> /home/pbulk/build/biology/kallisto/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DCOMPILER_SUPPORTS_CXX17 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/kallisto/work/.buildlink/include -std=c++17 -o CMakeFiles/cmTC_a9f36.dir/src.cxx.o -c /home/pbulk/build/biology/kallisto/work/kallisto-0.51.1/CMakeFiles/CMakeScratch/TryCompile-veau1L/src.cxx -specs=/home/pbulk/build/biology/kallisto/work/.cwrapper/specs.pkgsrc [*] c++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -L/opt/local/lib -Wl,-R/opt/local/lib -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 CMakeFiles/cmTC_a9f36.dir/src.cxx.o -o cmTC_a9f36 <.> /home/pbulk/build/biology/kallisto/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/kallisto/work/.buildlink/include -L/home/pbulk/build/biology/kallisto/work/.buildlink/lib -Wl,-rpath,/opt/local/lib CMakeFiles/cmTC_a9f36.dir/src.cxx.o -o cmTC_a9f36 -specs=/home/pbulk/build/biology/kallisto/work/.cwrapper/specs.pkgsrc -lumem [*] cc -DCMAKE_HAVE_LIBC_PTHREAD -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -o CMakeFiles/cmTC_24fd8.dir/src.c.o -c /home/pbulk/build/biology/kallisto/work/kallisto-0.51.1/CMakeFiles/CMakeScratch/TryCompile-weau1L/src.c <.> /home/pbulk/build/biology/kallisto/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DCMAKE_HAVE_LIBC_PTHREAD -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/kallisto/work/.buildlink/include -o CMakeFiles/cmTC_24fd8.dir/src.c.o -c /home/pbulk/build/biology/kallisto/work/kallisto-0.51.1/CMakeFiles/CMakeScratch/TryCompile-weau1L/src.c -specs=/home/pbulk/build/biology/kallisto/work/.cwrapper/specs.pkgsrc -gdwarf-2 [*] cc -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -L/opt/local/lib -Wl,-R/opt/local/lib -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 CMakeFiles/cmTC_24fd8.dir/src.c.o -o cmTC_24fd8 <.> /home/pbulk/build/biology/kallisto/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/kallisto/work/.buildlink/include -L/home/pbulk/build/biology/kallisto/work/.buildlink/lib -Wl,-rpath,/opt/local/lib CMakeFiles/cmTC_24fd8.dir/src.c.o -o cmTC_24fd8 -specs=/home/pbulk/build/biology/kallisto/work/.cwrapper/specs.pkgsrc -gdwarf-2 -lumem [*] /home/pbulk/build/biology/kallisto/work/.tools/bin/mkdir -p build <.> /usr/bin/mkdir -p -p build [*] cc -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include CMakeCCompilerId.c <.> /home/pbulk/build/biology/kallisto/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/kallisto/work/.buildlink/include CMakeCCompilerId.c -specs=/home/pbulk/build/biology/kallisto/work/.cwrapper/specs.pkgsrc -gdwarf-2 [*] cc -print-sysroot <.> /home/pbulk/build/biology/kallisto/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -print-sysroot -specs=/home/pbulk/build/biology/kallisto/work/.cwrapper/specs.pkgsrc -gdwarf-2 -I/home/pbulk/build/biology/kallisto/work/.buildlink/include [*] c++ -Wno-subobject-linkage -Wno-return-type CMakeCXXCompilerId.cpp <.> /home/pbulk/build/biology/kallisto/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -Wno-subobject-linkage -Wno-return-type CMakeCXXCompilerId.cpp -specs=/home/pbulk/build/biology/kallisto/work/.cwrapper/specs.pkgsrc -I/home/pbulk/build/biology/kallisto/work/.buildlink/include [*] c++ -Wno-subobject-linkage -Wno-return-type -E -x c++-header /opt/local/share/cmake-4.1/Modules/CXX-DetectStdlib.h -o - <.> /home/pbulk/build/biology/kallisto/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -Wno-subobject-linkage -Wno-return-type -E -x c++-header /opt/local/share/cmake-4.1/Modules/CXX-DetectStdlib.h -o - -specs=/home/pbulk/build/biology/kallisto/work/.cwrapper/specs.pkgsrc -I/home/pbulk/build/biology/kallisto/work/.buildlink/include [*] c++ -print-sysroot <.> /home/pbulk/build/biology/kallisto/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -print-sysroot -specs=/home/pbulk/build/biology/kallisto/work/.cwrapper/specs.pkgsrc -I/home/pbulk/build/biology/kallisto/work/.buildlink/include [*] cc -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -v -o CMakeFiles/cmTC_c3b8b.dir/CMakeCCompilerABI.c.o -c /opt/local/share/cmake-4.1/Modules/CMakeCCompilerABI.c <.> /home/pbulk/build/biology/kallisto/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/kallisto/work/.buildlink/include -v -o CMakeFiles/cmTC_c3b8b.dir/CMakeCCompilerABI.c.o -c /opt/local/share/cmake-4.1/Modules/CMakeCCompilerABI.c -specs=/home/pbulk/build/biology/kallisto/work/.cwrapper/specs.pkgsrc -gdwarf-2 [*] cc -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -L/opt/local/lib -Wl,-R/opt/local/lib -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 -v CMakeFiles/cmTC_c3b8b.dir/CMakeCCompilerABI.c.o -o cmTC_c3b8b <.> /home/pbulk/build/biology/kallisto/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/kallisto/work/.buildlink/include -L/home/pbulk/build/biology/kallisto/work/.buildlink/lib -Wl,-rpath,/opt/local/lib -v CMakeFiles/cmTC_c3b8b.dir/CMakeCCompilerABI.c.o -o cmTC_c3b8b -specs=/home/pbulk/build/biology/kallisto/work/.cwrapper/specs.pkgsrc -gdwarf-2 -lumem [*] c++ -Wno-subobject-linkage -Wno-return-type -v -o CMakeFiles/cmTC_2a5d0.dir/CMakeCXXCompilerABI.cpp.o -c /opt/local/share/cmake-4.1/Modules/CMakeCXXCompilerABI.cpp <.> /home/pbulk/build/biology/kallisto/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -Wno-subobject-linkage -Wno-return-type -v -o CMakeFiles/cmTC_2a5d0.dir/CMakeCXXCompilerABI.cpp.o -c /opt/local/share/cmake-4.1/Modules/CMakeCXXCompilerABI.cpp -specs=/home/pbulk/build/biology/kallisto/work/.cwrapper/specs.pkgsrc -I/home/pbulk/build/biology/kallisto/work/.buildlink/include [*] c++ -Wno-subobject-linkage -Wno-return-type -L/opt/local/lib -Wl,-R/opt/local/lib -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 -v CMakeFiles/cmTC_2a5d0.dir/CMakeCXXCompilerABI.cpp.o -o cmTC_2a5d0 <.> /home/pbulk/build/biology/kallisto/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -Wno-subobject-linkage -Wno-return-type -L/home/pbulk/build/biology/kallisto/work/.buildlink/lib -Wl,-rpath,/opt/local/lib -v CMakeFiles/cmTC_2a5d0.dir/CMakeCXXCompilerABI.cpp.o -o cmTC_2a5d0 -specs=/home/pbulk/build/biology/kallisto/work/.cwrapper/specs.pkgsrc -I/home/pbulk/build/biology/kallisto/work/.buildlink/include -lumem [*] cc -DCMAKE_HAVE_LIBC_PTHREAD -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -o CMakeFiles/cmTC_6ff7d.dir/src.c.o -c /home/pbulk/build/biology/kallisto/work/kallisto-0.51.1/ext/bifrost/build/CMakeFiles/CMakeScratch/TryCompile-1haarO/src.c <.> /home/pbulk/build/biology/kallisto/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DCMAKE_HAVE_LIBC_PTHREAD -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/kallisto/work/.buildlink/include -o CMakeFiles/cmTC_6ff7d.dir/src.c.o -c /home/pbulk/build/biology/kallisto/work/kallisto-0.51.1/ext/bifrost/build/CMakeFiles/CMakeScratch/TryCompile-1haarO/src.c -specs=/home/pbulk/build/biology/kallisto/work/.cwrapper/specs.pkgsrc -gdwarf-2 [*] cc -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -L/opt/local/lib -Wl,-R/opt/local/lib -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 CMakeFiles/cmTC_6ff7d.dir/src.c.o -o cmTC_6ff7d <.> /home/pbulk/build/biology/kallisto/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/kallisto/work/.buildlink/include -L/home/pbulk/build/biology/kallisto/work/.buildlink/lib -Wl,-rpath,/opt/local/lib CMakeFiles/cmTC_6ff7d.dir/src.c.o -o cmTC_6ff7d -specs=/home/pbulk/build/biology/kallisto/work/.cwrapper/specs.pkgsrc -gdwarf-2 -lumem [*] c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/home/pbulk/build/biology/kallisto/work/kallisto-0.51.1/ext/bifrost/src -Wno-subobject-linkage -Wno-return-type -std=c++11 -O3 -DNDEBUG -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/Bifrost.cpp.o -MF CMakeFiles/bifrost_static.dir/Bifrost.cpp.o.d -o CMakeFiles/bifrost_static.dir/Bifrost.cpp.o -c /home/pbulk/build/biology/kallisto/work/kallisto-0.51.1/ext/bifrost/src/Bifrost.cpp <.> /home/pbulk/build/biology/kallisto/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/home/pbulk/build/biology/kallisto/work/kallisto-0.51.1/ext/bifrost/src -Wno-subobject-linkage -Wno-return-type -std=c++11 -O3 -DNDEBUG -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/Bifrost.cpp.o -MF CMakeFiles/bifrost_static.dir/Bifrost.cpp.o.d -o CMakeFiles/bifrost_static.dir/Bifrost.cpp.o -c /home/pbulk/build/biology/kallisto/work/kallisto-0.51.1/ext/bifrost/src/Bifrost.cpp -specs=/home/pbulk/build/biology/kallisto/work/.cwrapper/specs.pkgsrc -I/home/pbulk/build/biology/kallisto/work/.buildlink/include