+ case "${usergroup_phase}" in + local run_cmd + run_cmd=run_su + shift + run_su /opt/local/bin/bmake stage-install BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/R-gsl-2.1.8/work.log + su pbulk -c '"$@"' make /opt/local/bin/bmake stage-install BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/R-gsl-2.1.8/work.log ===> Installing for R-gsl-2.1.8 => Generating pre-install file lists => Creating installation directories * installing *source* package 'gsl' ... ** this is package 'gsl' version '2.1-8' ** package 'gsl' successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc -std=gnu2x checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc -std=gnu2x accepts -g... yes checking for gcc -std=gnu2x option to enable C11 features... none needed checking for gsl-config... /opt/local/bin/gsl-config checking if GSL version >= 2.5... yes configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: 'gcc (GCC) 13.4.0' gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I. -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c airy.c -o airy.o gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I. -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c bessel.c -o bessel.o gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I. -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c clausen.c -o clausen.o gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I. -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c coulomb.c -o coulomb.o gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I. -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c coupling.c -o coupling.o gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I. -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c dawson.c -o dawson.o gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I. -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c debye.c -o debye.o gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I. -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c dilog.c -o dilog.o gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I. -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c ellint.c -o ellint.o gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I. -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c elljac.c -o elljac.o gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I. -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c error.c -o error.o gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I. -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c expint.c -o expint.o gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I. -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c fermi_dirac.c -o fermi_dirac.o gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I. -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c gamma.c -o gamma.o gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I. -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c gegenbauer.c -o gegenbauer.o gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I. -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c hyperg.c -o hyperg.o gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I. -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c init.c -o init.o gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I. -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c laguerre.c -o laguerre.o gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I. -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c lambert.c -o lambert.o gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I. -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c legendre.c -o legendre.o gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I. -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c log.c -o log.o gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I. -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c poly.c -o poly.o gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I. -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c pow_int.c -o pow_int.o gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I. -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c psi.c -o psi.o gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I. -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c qrng.c -o qrng.o qrng.c: In function 'cleanup': qrng.c:13:34: warning: implicit declaration of function 'EXTPTR_PTR' [-Wimplicit-function-declaration] 13 | gsl_qrng_free((gsl_qrng*)EXTPTR_PTR(r)); | ^~~~~~~~~~ qrng.c:13:23: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 13 | gsl_qrng_free((gsl_qrng*)EXTPTR_PTR(r)); | ^ qrng.c: In function 'qrng_clone': qrng.c:43:47: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 43 | if (TYPEOF(r) != EXTPTRSXP || !(gen = (gsl_qrng*)EXTPTR_PTR(r))) | ^ In file included from /home/pbulk/build/math/R-gsl/work/.buildlink/lib/R/include/Rdefines.h:41, from qrng.c:3: qrng.c:46:54: warning: implicit declaration of function 'EXTPTR_TAG' [-Wimplicit-function-declaration] 46 | PROTECT(duplicate(EXTPTR_TAG(r))), R_NilValue); | ^~~~~~~~~~ /home/pbulk/build/math/R-gsl/work/.buildlink/lib/R/include/Rinternals.h:357:36: note: in definition of macro 'PROTECT' 357 | #define PROTECT(s) Rf_protect(s) | ^ qrng.c:46:54: warning: passing argument 1 of 'Rf_duplicate' makes pointer from integer without a cast [-Wint-conversion] 46 | PROTECT(duplicate(EXTPTR_TAG(r))), R_NilValue); | ^~~~~~~~~~~~~ | | | int /home/pbulk/build/math/R-gsl/work/.buildlink/lib/R/include/Rinternals.h:357:36: note: in definition of macro 'PROTECT' 357 | #define PROTECT(s) Rf_protect(s) | ^ /home/pbulk/build/math/R-gsl/work/.buildlink/lib/R/include/Rinternals.h:489:19: note: expected 'SEXP' {aka 'struct SEXPREC *'} but argument is of type 'int' 489 | SEXP Rf_duplicate(SEXP); | ^~~~ qrng.c: In function 'qrng_init': qrng.c:56:47: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 56 | if (TYPEOF(r) != EXTPTRSXP || !(gen = (gsl_qrng*)EXTPTR_PTR(r))) | ^ qrng.c: In function 'qrng_name': qrng.c:66:47: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 66 | if (TYPEOF(r) != EXTPTRSXP || !(gen = (gsl_qrng*)EXTPTR_PTR(r))) | ^ qrng.c: In function 'qrng_size': qrng.c:75:47: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 75 | if (TYPEOF(r) != EXTPTRSXP || !(gen = (gsl_qrng*)EXTPTR_PTR(r))) | ^ qrng.c: In function 'qrng_state': qrng.c:85:47: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 85 | if (TYPEOF(r) != EXTPTRSXP || !(gen = (gsl_qrng*)EXTPTR_PTR(r))) | ^ qrng.c: In function 'qrng_get': qrng.c:98:47: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 98 | if (TYPEOF(r) != EXTPTRSXP || !(gen = (gsl_qrng*)EXTPTR_PTR(r))) | ^ qrng.c:101:25: warning: passing argument 1 of 'Rf_asInteger' makes pointer from integer without a cast [-Wint-conversion] 101 | dim = asInteger(EXTPTR_TAG(r)); | ^~~~~~~~~~~~~ | | | int /home/pbulk/build/math/R-gsl/work/.buildlink/lib/R/include/Rinternals.h:452:23: note: expected 'SEXP' {aka 'struct SEXPREC *'} but argument is of type 'int' 452 | int Rf_asInteger(SEXP x); | ~~~~~^ qrng.c: In function 'get_n': qrng.c:116:47: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 116 | if (TYPEOF(r) != EXTPTRSXP || !(gen = (gsl_qrng*)EXTPTR_PTR(r))) | ^ qrng.c:119:25: warning: passing argument 1 of 'Rf_asInteger' makes pointer from integer without a cast [-Wint-conversion] 119 | dim = asInteger(EXTPTR_TAG(r)); | ^~~~~~~~~~~~~ | | | int /home/pbulk/build/math/R-gsl/work/.buildlink/lib/R/include/Rinternals.h:452:23: note: expected 'SEXP' {aka 'struct SEXPREC *'} but argument is of type 'int' 452 | int Rf_asInteger(SEXP x); | ~~~~~^ gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I. -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c rng.c -o rng.o rng.c: In function 'rng_cleanup': rng.c:8:32: warning: implicit declaration of function 'EXTPTR_PTR' [-Wimplicit-function-declaration] 8 | gsl_rng_free((gsl_rng*)EXTPTR_PTR(r)); | ^~~~~~~~~~ rng.c:8:22: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 8 | gsl_rng_free((gsl_rng*)EXTPTR_PTR(r)); | ^ rng.c: In function 'get_rng_from_sexp': rng.c:13:49: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 13 | if (TYPEOF(rng) != EXTPTRSXP || !(gen = (gsl_rng*)EXTPTR_PTR(rng))) { | ^ In file included from /home/pbulk/build/math/R-gsl/work/.buildlink/lib/R/include/Rdefines.h:41, from rng.c:5: rng.c: In function 'rng_clone': rng.c:99:54: warning: implicit declaration of function 'EXTPTR_TAG' [-Wimplicit-function-declaration] 99 | PROTECT(duplicate(EXTPTR_TAG(r))), R_NilValue); | ^~~~~~~~~~ /home/pbulk/build/math/R-gsl/work/.buildlink/lib/R/include/Rinternals.h:357:36: note: in definition of macro 'PROTECT' 357 | #define PROTECT(s) Rf_protect(s) | ^ rng.c:99:54: warning: passing argument 1 of 'Rf_duplicate' makes pointer from integer without a cast [-Wint-conversion] 99 | PROTECT(duplicate(EXTPTR_TAG(r))), R_NilValue); | ^~~~~~~~~~~~~ | | | int /home/pbulk/build/math/R-gsl/work/.buildlink/lib/R/include/Rinternals.h:357:36: note: in definition of macro 'PROTECT' 357 | #define PROTECT(s) Rf_protect(s) | ^ /home/pbulk/build/math/R-gsl/work/.buildlink/lib/R/include/Rinternals.h:489:19: note: expected 'SEXP' {aka 'struct SEXPREC *'} but argument is of type 'int' 489 | SEXP Rf_duplicate(SEXP); | ^~~~ gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I. -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c synchrotron.c -o synchrotron.o gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I. -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c transport.c -o transport.o gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I. -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c trig.c -o trig.o gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I. -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c vector.c -o vector.o gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I. -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c zeta.c -o zeta.o gcc -std=gnu2x -shared -L/opt/local/lib/R/lib -Wl,-R/opt/local/lib/R/lib -L/opt/local/lib -Wl,-R/opt/local/lib -liconv -lintl -pthread -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 -o gsl.so airy.o bessel.o clausen.o coulomb.o coupling.o dawson.o debye.o dilog.o ellint.o elljac.o error.o expint.o fermi_dirac.o gamma.o gegenbauer.o hyperg.o init.o laguerre.o lambert.o legendre.o log.o poly.o pow_int.o psi.o qrng.o rng.o synchrotron.o transport.o trig.o vector.o zeta.o -Wl,-R/opt/local/lib -L/opt/local/lib -lgsl -lgslcblas -lm -L/opt/local/lib/R/lib installing to /home/pbulk/build/math/R-gsl/work/.destdir/opt/local/lib/R/library/00LOCK-gsl/00new/gsl/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Error: package or namespace load failed for 'gsl' in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/home/pbulk/build/math/R-gsl/work/.destdir/opt/local/lib/R/library/00LOCK-gsl/00new/gsl/libs/gsl.so': ld.so.1: R: fatal: relocation error: file /home/pbulk/build/math/R-gsl/work/.destdir/opt/local/lib/R/library/00LOCK-gsl/00new/gsl/libs/gsl.so: symbol EXTPTR_PTR: referenced symbol not found Error: loading failed Execution halted ERROR: loading failed * removing '/home/pbulk/build/math/R-gsl/work/.destdir/opt/local/lib/R/library/gsl' *** Error code 1 Stop. bmake[1]: stopped making "stage-install" in /data/jenkins/workspace/pkgsrc-trunk-x86_64/math/R-gsl *** Error code 1 Stop. bmake: stopped making "stage-install" in /data/jenkins/workspace/pkgsrc-trunk-x86_64/math/R-gsl