+ case "${usergroup_phase}" in + local run_cmd + run_cmd=run_su + shift + run_su /opt/local/bin/bmake stage-install BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/R-proxy-0.4.27/work.log + su pbulk -c '"$@"' make /opt/local/bin/bmake stage-install BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/R-proxy-0.4.27/work.log ===> Installing for R-proxy-0.4.27 => Generating pre-install file lists => Creating installation directories * installing *source* package 'proxy' ... ** this is package 'proxy' version '0.4-27' ** package 'proxy' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: 'gcc (GCC) 13.4.0' gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c apply.c -o apply.o In file included from /home/pbulk/build/math/R-proxy/work/.buildlink/lib/R/include/Rdefines.h:41, from apply.c:2: apply.c: In function 'R_apply_dist_data_frame': apply.c:460:36: warning: implicit declaration of function 'ATTRIB' [-Wimplicit-function-declaration] 460 | PROTECT( CONS(ATTRIB(VECTOR_ELT(x, k)), | ^~~~~~ /home/pbulk/build/math/R-proxy/work/.buildlink/lib/R/include/Rinternals.h:357:36: note: in definition of macro 'PROTECT' 357 | #define PROTECT(s) Rf_protect(s) | ^ apply.c:459:30: note: in expansion of macro 'LCONS' 459 | c = eval(PROTECT(LCONS(install("identical"), | ^~~~~ apply.c:460:22: note: in expansion of macro 'PROTECT' 460 | PROTECT( CONS(ATTRIB(VECTOR_ELT(x, k)), | ^~~~~~~ apply.c:460:31: note: in expansion of macro 'CONS' 460 | PROTECT( CONS(ATTRIB(VECTOR_ELT(x, k)), | ^~~~ apply.c:461:36: warning: passing argument 1 of 'Rf_cons' makes pointer from integer without a cast [-Wint-conversion] 461 | CONS(ATTRIB(VECTOR_ELT(y, k)), /home/pbulk/build/math/R-proxy/work/.buildlink/lib/R/include/Rinternals.h:357:36: note: in definition of macro 'PROTECT' 357 | #define PROTECT(s) Rf_protect(s) | ^ apply.c:459:30: note: in expansion of macro 'LCONS' 459 | c = eval(PROTECT(LCONS(install("identical"), | ^~~~~ apply.c:460:22: note: in expansion of macro 'PROTECT' 460 | PROTECT( CONS(ATTRIB(VECTOR_ELT(x, k)), | ^~~~~~~ apply.c:460:31: note: in expansion of macro 'CONS' 460 | PROTECT( CONS(ATTRIB(VECTOR_ELT(x, k)), | ^~~~ apply.c:461:31: note: in expansion of macro 'CONS' 461 | CONS(ATTRIB(VECTOR_ELT(y, k)), | ^~~~ /home/pbulk/build/math/R-proxy/work/.buildlink/lib/R/include/Rinternals.h:481:14: note: expected 'SEXP' {aka 'struct SEXPREC *'} but argument is of type 'int' 481 | SEXP Rf_cons(SEXP, SEXP); | ^~~~ apply.c:460:36: warning: passing argument 1 of 'Rf_cons' makes pointer from integer without a cast [-Wint-conversion] 460 | PROTECT( CONS(ATTRIB(VECTOR_ELT(x, k)), /home/pbulk/build/math/R-proxy/work/.buildlink/lib/R/include/Rinternals.h:357:36: note: in definition of macro 'PROTECT' 357 | #define PROTECT(s) Rf_protect(s) | ^ apply.c:459:30: note: in expansion of macro 'LCONS' 459 | c = eval(PROTECT(LCONS(install("identical"), | ^~~~~ apply.c:460:22: note: in expansion of macro 'PROTECT' 460 | PROTECT( CONS(ATTRIB(VECTOR_ELT(x, k)), | ^~~~~~~ apply.c:460:31: note: in expansion of macro 'CONS' 460 | PROTECT( CONS(ATTRIB(VECTOR_ELT(x, k)), | ^~~~ /home/pbulk/build/math/R-proxy/work/.buildlink/lib/R/include/Rinternals.h:481:14: note: expected 'SEXP' {aka 'struct SEXPREC *'} but argument is of type 'int' 481 | SEXP Rf_cons(SEXP, SEXP); | ^~~~ apply.c:521:9: warning: implicit declaration of function 'SET_ATTRIB'; did you mean 'SET_ATTR'? [-Wimplicit-function-declaration] 521 | SET_ATTRIB(s, ATTRIB(t)); // fixme: may be wrong | ^~~~~~~~~~ | SET_ATTR apply.c:522:9: warning: implicit declaration of function 'SET_OBJECT'; did you mean 'NEW_OBJECT'? [-Wimplicit-function-declaration] 522 | SET_OBJECT(s, OBJECT(t)); | ^~~~~~~~~~ | NEW_OBJECT apply.c:522:23: warning: implicit declaration of function 'OBJECT' [-Wimplicit-function-declaration] 522 | SET_OBJECT(s, OBJECT(t)); | ^~~~~~ gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c arrayIndex.c -o arrayIndex.o In file included from arrayIndex.c:3: arrayIndex.c: In function 'stringSubscript': /home/pbulk/build/math/R-proxy/work/.buildlink/lib/R/include/Rinternals.h:1007:33: warning: implicit declaration of function 'Rf_NonNullStringMatch'; did you mean 'NonNullStringMatch'? [-Wimplicit-function-declaration] 1007 | #define NonNullStringMatch Rf_NonNullStringMatch | ^~~~~~~~~~~~~~~~~~~~~ arrayIndex.c:180:25: note: in expansion of macro 'NonNullStringMatch' 180 | if (NonNullStringMatch(STRING_ELT(s, i), names_j)) { | ^~~~~~~~~~~~~~~~~~ gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c distance.c -o distance.o gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c dll.c -o dll.o gcc -std=gnu2x -I"/opt/local/lib/R/include" -DNDEBUG -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/local/include -I/opt/local/include/glib-2.0 -I/opt/local/include/gio-unix-2.0 -I/opt/local/lib/glib-2.0/include -I/usr/include -I/opt/local/include/freetype2 -I/opt/local/include/harfbuzz -I/opt/local/include/ncurses -DLDAP_DEPRECATED -I/opt/local/include/libxml2 -c util.c -o util.o gcc -std=gnu2x -shared -L/opt/local/lib/R/lib -Wl,-R/opt/local/lib/R/lib -L/opt/local/lib -Wl,-R/opt/local/lib -liconv -lintl -pthread -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 -o proxy.so apply.o arrayIndex.o distance.o dll.o util.o -L/opt/local/lib/R/lib installing to /home/pbulk/build/math/R-proxy/work/.destdir/opt/local/lib/R/library/00LOCK-proxy/00new/proxy/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Error: package or namespace load failed for 'proxy' in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/home/pbulk/build/math/R-proxy/work/.destdir/opt/local/lib/R/library/00LOCK-proxy/00new/proxy/libs/proxy.so': ld.so.1: R: fatal: relocation error: file /home/pbulk/build/math/R-proxy/work/.destdir/opt/local/lib/R/library/00LOCK-proxy/00new/proxy/libs/proxy.so: symbol Rf_NonNullStringMatch: referenced symbol not found Error: loading failed Execution halted ERROR: loading failed * removing '/home/pbulk/build/math/R-proxy/work/.destdir/opt/local/lib/R/library/proxy' *** Error code 1 Stop. bmake[1]: stopped making "stage-install" in /data/jenkins/workspace/pkgsrc-trunk-x86_64/math/R-proxy *** Error code 1 Stop. bmake: stopped making "stage-install" in /data/jenkins/workspace/pkgsrc-trunk-x86_64/math/R-proxy