=> "/opt/local/bin/bmake" ["-C", "/data/jenkins/workspace/pkgsrc-trunk-x86_64/math/R-PHYLOGR", "stage-install", "BATCH=1", "DEPENDS_TARGET=/nonexistent"]
===> Installing for R-PHYLOGR-1.0.11
=> Generating pre-install file lists
=> Creating installation directories
* installing *source* package 'PHYLOGR' ...
** this is package 'PHYLOGR' version '1.0.11'
** package 'PHYLOGR' successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PHYLOGR)
=> Generating CTF data
=> Automatic stripping of debug information
=> Automatic manual page handling
=> Generating post-install file lists
=> Checking file-check results for R-PHYLOGR-1.0.11
=> Checking for non-existent script interpreters in R-PHYLOGR-1.0.11
=> Checking file permissions in R-PHYLOGR-1.0.11
warning: /tmp/work/math/R-PHYLOGR/work/.destdir/opt/local/lib/R/library/PHYLOGR/Examples/49hmt.fic: executable bit is set on non-executable file.
warning: /tmp/work/math/R-PHYLOGR/work/.destdir/opt/local/lib/R/library/PHYLOGR/Examples/49hmt.inp: executable bit is set on non-executable file.
warning: /tmp/work/math/R-PHYLOGR/work/.destdir/opt/local/lib/R/library/PHYLOGR/Examples/49hmt.pdi: executable bit is set on non-executable file.
warning: /tmp/work/math/R-PHYLOGR/work/.destdir/opt/local/lib/R/library/PHYLOGR/Examples/49hmt.sim: executable bit is set on non-executable file.
warning: /tmp/work/math/R-PHYLOGR/work/.destdir/opt/local/lib/R/library/PHYLOGR/Examples/49lbr.inp: executable bit is set on non-executable file.
warning: /tmp/work/math/R-PHYLOGR/work/.destdir/opt/local/lib/R/library/PHYLOGR/Examples/49lbr.pdi: executable bit is set on non-executable file.
warning: /tmp/work/math/R-PHYLOGR/work/.destdir/opt/local/lib/R/library/PHYLOGR/Examples/49lbr.sim: executable bit is set on non-executable file.
warning: /tmp/work/math/R-PHYLOGR/work/.destdir/opt/local/lib/R/library/PHYLOGR/Examples/49ms.dsc: executable bit is set on non-executable file.
warning: /tmp/work/math/R-PHYLOGR/work/.destdir/opt/local/lib/R/library/PHYLOGR/Examples/49ms.fic: executable bit is set on non-executable file.
warning: /tmp/work/math/R-PHYLOGR/work/.destdir/opt/local/lib/R/library/PHYLOGR/Examples/49ms.pdi: executable bit is set on non-executable file.
warning: /tmp/work/math/R-PHYLOGR/work/.destdir/opt/local/lib/R/library/PHYLOGR/Examples/49ms.sim: executable bit is set on non-executable file.
warning: /tmp/work/math/R-PHYLOGR/work/.destdir/opt/local/lib/R/library/PHYLOGR/Examples/icfxx.fic: executable bit is set on non-executable file.
warning: /tmp/work/math/R-PHYLOGR/work/.destdir/opt/local/lib/R/library/PHYLOGR/Examples/icfxx.pdi: executable bit is set on non-executable file.
warning: /tmp/work/math/R-PHYLOGR/work/.destdir/opt/local/lib/R/library/PHYLOGR/Examples/icfxx.sim: executable bit is set on non-executable file.
warning: /tmp/work/math/R-PHYLOGR/work/.destdir/opt/local/lib/R/library/PHYLOGR/Examples/iclag.fic: executable bit is set on non-executable file.
warning: /tmp/work/math/R-PHYLOGR/work/.destdir/opt/local/lib/R/library/PHYLOGR/Examples/iclag.pdi: executable bit is set on non-executable file.
warning: /tmp/work/math/R-PHYLOGR/work/.destdir/opt/local/lib/R/library/PHYLOGR/Examples/iclag.sim: executable bit is set on non-executable file.
warning: /tmp/work/math/R-PHYLOGR/work/.destdir/opt/local/lib/R/library/PHYLOGR/Examples/ifsmi.dsc: executable bit is set on non-executable file.
warning: /tmp/work/math/R-PHYLOGR/work/.destdir/opt/local/lib/R/library/PHYLOGR/Examples/ifsmi.fic: executable bit is set on non-executable file.
warning: /tmp/work/math/R-PHYLOGR/work/.destdir/opt/local/lib/R/library/PHYLOGR/Examples/ifsmi.pdi: executable bit is set on non-executable file.
warning: /tmp/work/math/R-PHYLOGR/work/.destdir/opt/local/lib/R/library/PHYLOGR/Examples/ifsmi.sim: executable bit is set on non-executable file.
warning: /tmp/work/math/R-PHYLOGR/work/.destdir/opt/local/lib/R/library/PHYLOGR/Examples/ihshw.fic: executable bit is set on non-executable file.
warning: /tmp/work/math/R-PHYLOGR/work/.destdir/opt/local/lib/R/library/PHYLOGR/Examples/ihshw.pdi: executable bit is set on non-executable file.
warning: /tmp/work/math/R-PHYLOGR/work/.destdir/opt/local/lib/R/library/PHYLOGR/Examples/ihshw.sim: executable bit is set on non-executable file.
0 errors and 24 warnings.
=> Checking for missing run-time search paths in R-PHYLOGR-1.0.11
=> Checking for work-directory references in R-PHYLOGR-1.0.11