[*] /tmp/work/biology/plinkseq/work/.tools/bin/mkdir conf563254.dir
<.> /usr/bin/mkdir -p conf563254.dir
[*] /tmp/work/biology/plinkseq/work/.tools/bin/mkdir -p .
<.> /usr/bin/mkdir -p -p .
[*] /tmp/work/biology/plinkseq/work/.tools/bin/mkdir --version
<.> /usr/bin/mkdir -p --version
[*] /tmp/work/biology/plinkseq/work/.tools/bin/mkdir .tst
<.> /usr/bin/mkdir -p .tst
[*] cc --version
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 --version -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf -I/tmp/work/biology/plinkseq/work/.buildlink/include
[*] cc -v
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -v -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf -I/tmp/work/biology/plinkseq/work/.buildlink/include
[*] cc -V
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -V -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf -I/tmp/work/biology/plinkseq/work/.buildlink/include
[*] cc -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include -lsocket -lnsl -L/opt/local/lib -Wl,-R/opt/local/lib -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include -lsocket -lnsl -L/tmp/work/biology/plinkseq/work/.buildlink/lib -Wl,-rpath,/opt/local/lib conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] cc -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include -lsocket -lnsl -L/opt/local/lib -Wl,-R/opt/local/lib -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include -lsocket -lnsl -L/tmp/work/biology/plinkseq/work/.buildlink/lib -Wl,-rpath,/opt/local/lib conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf -lumem
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] cc -c -g -I/opt/local/include -I/usr/include conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -g -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] /tmp/work/biology/plinkseq/work/.tools/bin/mkdir conftest.dir
<.> /usr/bin/mkdir -p conftest.dir
[*] /tmp/work/biology/plinkseq/work/.tools/bin/mkdir sub
<.> /usr/bin/mkdir -p sub
[*] cc -MT sub/conftest.o -MD -MP -MF sub/conftest.TPo -c -o sub/conftest.o sub/conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -MT sub/conftest.o -MD -MP -MF sub/conftest.TPo -c -o sub/conftest.o sub/conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf -I/tmp/work/biology/plinkseq/work/.buildlink/include
[*] cc -print-prog-name=ld
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -print-prog-name=ld -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf -I/tmp/work/biology/plinkseq/work/.buildlink/include
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] cc -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include -lsocket -lnsl -L/opt/local/lib -Wl,-R/opt/local/lib -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 conftest.c conftstm.o
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include -lsocket -lnsl -L/tmp/work/biology/plinkseq/work/.buildlink/lib -Wl,-rpath,/opt/local/lib conftest.c conftstm.o -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf -lumem
[*] cc -E -I/opt/local/include -I/usr/include conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -E -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] cc -E -I/opt/local/include -I/usr/include conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -E -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] cc -E -I/opt/local/include -I/usr/include conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -E -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] cc -E -I/opt/local/include -I/usr/include conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -E -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] cc -E -I/opt/local/include -I/usr/include conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -E -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] cc -E -I/opt/local/include -I/usr/include conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -E -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] cc -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include -lsocket -lnsl -L/opt/local/lib -Wl,-R/opt/local/lib -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include -lsocket -lnsl -L/tmp/work/biology/plinkseq/work/.buildlink/lib -Wl,-rpath,/opt/local/lib conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf -lumem
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] /tmp/work/biology/plinkseq/work/.tools/bin/mkdir .libs
<.> /usr/bin/mkdir -p .libs
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] cc -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include -lsocket -lnsl -L/opt/local/lib -Wl,-R/opt/local/lib -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include -lsocket -lnsl -L/tmp/work/biology/plinkseq/work/.buildlink/lib -Wl,-rpath,/opt/local/lib conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf -lumem
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include -fno-rtti -fno-exceptions conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include -fno-rtti -fno-exceptions conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include -fPIC -DPIC -DPIC conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include -fPIC -DPIC -DPIC conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] cc -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include -lsocket -lnsl -L/opt/local/lib -Wl,-R/opt/local/lib -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 -static conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include -lsocket -lnsl -L/tmp/work/biology/plinkseq/work/.buildlink/lib -Wl,-rpath,/opt/local/lib -static conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf -lumem
[*] /tmp/work/biology/plinkseq/work/.tools/bin/mkdir conftest
<.> /usr/bin/mkdir -p conftest
[*] /tmp/work/biology/plinkseq/work/.tools/bin/mkdir out
<.> /usr/bin/mkdir -p out
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include -o out/conftest2.o conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include -o out/conftest2.o conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.c -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] cc -shared -Wl,-z -Wl,text -Wl,-h -Wl,conftest -o conftest conftest.o -v
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -shared -Wl,-z -Wl,text -Wl,-h -Wl,conftest -o conftest conftest.o -v -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf -I/tmp/work/biology/plinkseq/work/.buildlink/include -lumem
[*] cc -print-search-dirs
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -print-search-dirs -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf -I/tmp/work/biology/plinkseq/work/.buildlink/include
[*] cc -I/opt/local/include -I/usr/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -lsocket -lnsl -L/opt/local/lib -Wl,-R/opt/local/lib -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 -print-multi-os-directory
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -I/tmp/work/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -lsocket -lnsl -L/tmp/work/biology/plinkseq/work/.buildlink/lib -Wl,-rpath,/opt/local/lib -print-multi-os-directory -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] /tmp/work/biology/plinkseq/work/.tools/bin/strip -V
<.> set args -V; shift; exit 0
[*] cc -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include -lsocket -lnsl -L/opt/local/lib -Wl,-R/opt/local/lib -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 conftest.c -lprotobuf
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include -lsocket -lnsl -L/tmp/work/biology/plinkseq/work/.buildlink/lib -Wl,-rpath,/opt/local/lib conftest.c -lprotobuf -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf -lumem
[*] c++ --version
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 --version -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -I/tmp/work/biology/plinkseq/work/.buildlink/include
[*] c++ -v
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -v -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -I/tmp/work/biology/plinkseq/work/.buildlink/include
[*] c++ -V
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -V -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -I/tmp/work/biology/plinkseq/work/.buildlink/include
[*] c++ -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include conftest.cpp
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.cpp -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc
[*] c++ -c -g -I/opt/local/include -I/usr/include conftest.cpp
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -g -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.cpp -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc
[*] /tmp/work/biology/plinkseq/work/.tools/bin/mkdir conftest.dir
<.> /usr/bin/mkdir -p conftest.dir
[*] /tmp/work/biology/plinkseq/work/.tools/bin/mkdir sub
<.> /usr/bin/mkdir -p sub
[*] c++ -MT sub/conftest.o -MD -MP -MF sub/conftest.TPo -c -o sub/conftest.o sub/conftest.c
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -MT sub/conftest.o -MD -MP -MF sub/conftest.TPo -c -o sub/conftest.o sub/conftest.c -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -I/tmp/work/biology/plinkseq/work/.buildlink/include
[*] c++ --version
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 --version -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -I/tmp/work/biology/plinkseq/work/.buildlink/include
[*] c++ -v
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -v -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -I/tmp/work/biology/plinkseq/work/.buildlink/include
[*] c++ -V
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -V -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -I/tmp/work/biology/plinkseq/work/.buildlink/include
[*] c++ -v
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -v -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -I/tmp/work/biology/plinkseq/work/.buildlink/include
[*] c++ -E -I/opt/local/include -I/usr/include conftest.cpp
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -E -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.cpp -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc
[*] c++ -E -I/opt/local/include -I/usr/include conftest.cpp
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -E -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.cpp -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc
[*] c++ -E -I/opt/local/include -I/usr/include conftest.cpp
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -E -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.cpp -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc
[*] c++ -E -I/opt/local/include -I/usr/include conftest.cpp
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -E -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.cpp -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc
[*] c++ -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include conftest.cpp
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.cpp -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc
[*] c++ -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include -lsocket -lnsl -L/opt/local/lib -Wl,-R/opt/local/lib -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 conftest.cpp
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include -lsocket -lnsl -L/tmp/work/biology/plinkseq/work/.buildlink/lib -Wl,-rpath,/opt/local/lib conftest.cpp -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -lumem
[*] c++ -print-prog-name=ld
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -print-prog-name=ld -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -I/tmp/work/biology/plinkseq/work/.buildlink/include
[*] c++ --version
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 --version -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -I/tmp/work/biology/plinkseq/work/.buildlink/include
[*] c++ -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include conftest.cpp
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include conftest.cpp -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc
[*] c++ -shared -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -v conftest.o
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -shared -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include -v conftest.o -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc
[*] c++ -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include -fPIC -DPIC -DPIC conftest.cpp
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include -fPIC -DPIC -DPIC conftest.cpp -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc
[*] c++ -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include -lsocket -lnsl -L/opt/local/lib -Wl,-R/opt/local/lib -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 -static conftest.cpp
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include -lsocket -lnsl -L/tmp/work/biology/plinkseq/work/.buildlink/lib -Wl,-rpath,/opt/local/lib -static conftest.cpp -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -lumem
[*] /tmp/work/biology/plinkseq/work/.tools/bin/mkdir conftest
<.> /usr/bin/mkdir -p conftest
[*] /tmp/work/biology/plinkseq/work/.tools/bin/mkdir out
<.> /usr/bin/mkdir -p out
[*] c++ -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -I/opt/local/include -I/usr/include -o out/conftest2.o conftest.cpp
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include -o out/conftest2.o conftest.cpp -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc
[*] cc --version
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 --version -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf -I/tmp/work/biology/plinkseq/work/.buildlink/include
[*] cc -v
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -v -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf -I/tmp/work/biology/plinkseq/work/.buildlink/include
[*] cc -V
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -V -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf -I/tmp/work/biology/plinkseq/work/.buildlink/include
[*] /tmp/work/biology/plinkseq/work/.tools/bin/mkdir conf573287.dir
<.> /usr/bin/mkdir -p conf573287.dir
[*] /tmp/work/biology/plinkseq/work/.tools/bin/mkdir -p .
<.> /usr/bin/mkdir -p -p .
[*] /tmp/work/biology/plinkseq/work/.tools/bin/mkdir -p lib/./.deps
<.> /usr/bin/mkdir -p -p lib/./.deps
[*] /tmp/work/biology/plinkseq/work/.tools/bin/mkdir -p client/./.deps
<.> /usr/bin/mkdir -p -p client/./.deps
[*] /tmp/work/biology/plinkseq/work/.tools/bin/mkdir -p browser/./.deps
<.> /usr/bin/mkdir -p -p browser/./.deps
[*] /tmp/work/biology/plinkseq/work/.tools/bin/mkdir -p index/./.deps
<.> /usr/bin/mkdir -p -p index/./.deps
[*] /tmp/work/biology/plinkseq/work/.tools/bin/mkdir -p util/./.deps
<.> /usr/bin/mkdir -p -p util/./.deps
[*] libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/local/include -I/usr/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -MT libplinkseq_la-eval.lo -MD -MP -MF .deps/libplinkseq_la-eval.Tpo -c -o libplinkseq_la-eval.lo eval.cpp
<.> /opt/local/bin/libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/tmp/work/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-eval.lo -MD -MP -MF .deps/libplinkseq_la-eval.Tpo -c -o libplinkseq_la-eval.lo eval.cpp
[*] libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/local/include -I/usr/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -MT libplinkseq_la-token.lo -MD -MP -MF .deps/libplinkseq_la-token.Tpo -c -o libplinkseq_la-token.lo token.cpp
<.> /opt/local/bin/libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/tmp/work/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-token.lo -MD -MP -MF .deps/libplinkseq_la-token.Tpo -c -o libplinkseq_la-token.lo token.cpp
[*] libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/local/include -I/usr/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -MT libplinkseq_la-vcfz.lo -MD -MP -MF .deps/libplinkseq_la-vcfz.Tpo -c -o libplinkseq_la-vcfz.lo vcfz.cpp
<.> /opt/local/bin/libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/tmp/work/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-vcfz.lo -MD -MP -MF .deps/libplinkseq_la-vcfz.Tpo -c -o libplinkseq_la-vcfz.lo vcfz.cpp
[*] /tmp/work/biology/plinkseq/work/.tools/bin/mkdir .libs
<.> /usr/bin/mkdir -p .libs
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I/tmp/work/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-eval.lo -MD -MP -MF .deps/libplinkseq_la-eval.Tpo -c eval.cpp -fPIC -DPIC -o .libs/libplinkseq_la-eval.o
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/tmp/work/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-eval.lo -MD -MP -MF .deps/libplinkseq_la-eval.Tpo -c eval.cpp -fPIC -DPIC -o .libs/libplinkseq_la-eval.o -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I/tmp/work/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-token.lo -MD -MP -MF .deps/libplinkseq_la-token.Tpo -c token.cpp -fPIC -DPIC -o .libs/libplinkseq_la-token.o
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/tmp/work/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-token.lo -MD -MP -MF .deps/libplinkseq_la-token.Tpo -c token.cpp -fPIC -DPIC -o .libs/libplinkseq_la-token.o -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I/tmp/work/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-vcfz.lo -MD -MP -MF .deps/libplinkseq_la-vcfz.Tpo -c vcfz.cpp -fPIC -DPIC -o .libs/libplinkseq_la-vcfz.o
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/tmp/work/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-vcfz.lo -MD -MP -MF .deps/libplinkseq_la-vcfz.Tpo -c vcfz.cpp -fPIC -DPIC -o .libs/libplinkseq_la-vcfz.o -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I/tmp/work/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-vcfz.lo -MD -MP -MF .deps/libplinkseq_la-vcfz.Tpo -c vcfz.cpp -o libplinkseq_la-vcfz.o
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/tmp/work/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-vcfz.lo -MD -MP -MF .deps/libplinkseq_la-vcfz.Tpo -c vcfz.cpp -o libplinkseq_la-vcfz.o -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I/tmp/work/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-eval.lo -MD -MP -MF .deps/libplinkseq_la-eval.Tpo -c eval.cpp -o libplinkseq_la-eval.o
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/tmp/work/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-eval.lo -MD -MP -MF .deps/libplinkseq_la-eval.Tpo -c eval.cpp -o libplinkseq_la-eval.o -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I/tmp/work/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-token.lo -MD -MP -MF .deps/libplinkseq_la-token.Tpo -c token.cpp -o libplinkseq_la-token.o
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/tmp/work/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-token.lo -MD -MP -MF .deps/libplinkseq_la-token.Tpo -c token.cpp -o libplinkseq_la-token.o -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc
[*] libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/local/include -I/usr/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -MT libplinkseq_la-gstore.lo -MD -MP -MF .deps/libplinkseq_la-gstore.Tpo -c -o libplinkseq_la-gstore.lo gstore.cpp
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[*] c++ -DHAVE_CONFIG_H -I. -I.. -I/tmp/work/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-vcfiterate.lo -MD -MP -MF .deps/libplinkseq_la-vcfiterate.Tpo -c vcfiterate.cpp -o libplinkseq_la-vcfiterate.o
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/tmp/work/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-vcfiterate.lo -MD -MP -MF .deps/libplinkseq_la-vcfiterate.Tpo -c vcfiterate.cpp -o libplinkseq_la-vcfiterate.o -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I/tmp/work/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-iterate.lo -MD -MP -MF .deps/libplinkseq_la-iterate.Tpo -c iterate.cpp -o libplinkseq_la-iterate.o
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/tmp/work/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-iterate.lo -MD -MP -MF .deps/libplinkseq_la-iterate.Tpo -c iterate.cpp -o libplinkseq_la-iterate.o -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc
[*] libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I/opt/local/include -I/usr/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -MT libplinkseq_la-sqlite3.lo -MD -MP -MF .deps/libplinkseq_la-sqlite3.Tpo -c -o libplinkseq_la-sqlite3.lo sqlite3.c
<.> /opt/local/bin/libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I/tmp/work/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-sqlite3.lo -MD -MP -MF .deps/libplinkseq_la-sqlite3.Tpo -c -o libplinkseq_la-sqlite3.lo sqlite3.c
[*] cc -DHAVE_CONFIG_H -I. -I.. -I/tmp/work/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-sqlite3.lo -MD -MP -MF .deps/libplinkseq_la-sqlite3.Tpo -c sqlite3.c -fPIC -DPIC -o .libs/libplinkseq_la-sqlite3.o
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/tmp/work/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-sqlite3.lo -MD -MP -MF .deps/libplinkseq_la-sqlite3.Tpo -c sqlite3.c -fPIC -DPIC -o .libs/libplinkseq_la-sqlite3.o -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] cc -DHAVE_CONFIG_H -I. -I.. -I/tmp/work/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-sqlite3.lo -MD -MP -MF .deps/libplinkseq_la-sqlite3.Tpo -c sqlite3.c -o libplinkseq_la-sqlite3.o
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/tmp/work/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-sqlite3.lo -MD -MP -MF .deps/libplinkseq_la-sqlite3.Tpo -c sqlite3.c -o libplinkseq_la-sqlite3.o -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -gdwarf-4 -gstrict-dwarf
[*] libtool --tag=CXX --mode=link g++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -lsocket -lnsl -L/opt/local/lib -Wl,-R/opt/local/lib -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 -o libplinkseq.la -rpath /opt/local/lib libplinkseq_la-eval.lo libplinkseq_la-token.lo libplinkseq_la-vcfz.lo libplinkseq_la-gstore.lo libplinkseq_la-globals.lo libplinkseq_la-variant.lo libplinkseq_la-svar.lo libplinkseq_la-genotype.lo libplinkseq_la-meta.lo libplinkseq_la-regions.lo libplinkseq_la-filemap.lo libplinkseq_la-vcf.lo libplinkseq_la-bcf.lo libplinkseq_la-zfstream.lo libplinkseq_la-sqlwrap.lo libplinkseq_la-helper.lo libplinkseq_la-locdb.lo libplinkseq_la-vardb.lo libplinkseq_la-segments.lo libplinkseq_la-varfunc.lo libplinkseq_la-variant.pb.lo libplinkseq_la-refdb.lo libplinkseq_la-seqdb.lo libplinkseq_la-annot.lo libplinkseq_la-inddb.lo libplinkseq_la-mask.lo libplinkseq_la-reffuncs.lo libplinkseq_la-vgroup.lo libplinkseq_la-allele.lo libplinkseq_la-individual.lo libplinkseq_la-indmap.lo libplinkseq_la-phmap.lo libplinkseq_la-permute.lo libplinkseq_la-crandom.lo libplinkseq_la-defs.lo libplinkseq_la-em.lo libplinkseq_la-bed.lo libplinkseq_la-varmeta.lo libplinkseq_la-pp.lo libplinkseq_la-pp.pb.lo libplinkseq_la-statistics.lo libplinkseq_la-dcdflib.lo libplinkseq_la-bgzf.lo libplinkseq_la-fisher.lo libplinkseq_la-glm.lo libplinkseq_la-matrix.lo libplinkseq_la-iterate.lo libplinkseq_la-vcfiterate.lo libplinkseq_la-netdb.lo libplinkseq_la-sqlite3.lo -lz -lprotobuf
<.> /opt/local/bin/libtool --tag=CXX --mode=link g++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include -lsocket -lnsl -L/tmp/work/biology/plinkseq/work/.buildlink/lib -Wl,-rpath,/opt/local/lib -o libplinkseq.la -rpath /opt/local/lib libplinkseq_la-eval.lo libplinkseq_la-token.lo libplinkseq_la-vcfz.lo libplinkseq_la-gstore.lo libplinkseq_la-globals.lo libplinkseq_la-variant.lo libplinkseq_la-svar.lo libplinkseq_la-genotype.lo libplinkseq_la-meta.lo libplinkseq_la-regions.lo libplinkseq_la-filemap.lo libplinkseq_la-vcf.lo libplinkseq_la-bcf.lo libplinkseq_la-zfstream.lo libplinkseq_la-sqlwrap.lo libplinkseq_la-helper.lo libplinkseq_la-locdb.lo libplinkseq_la-vardb.lo libplinkseq_la-segments.lo libplinkseq_la-varfunc.lo libplinkseq_la-variant.pb.lo libplinkseq_la-refdb.lo libplinkseq_la-seqdb.lo libplinkseq_la-annot.lo libplinkseq_la-inddb.lo libplinkseq_la-mask.lo libplinkseq_la-reffuncs.lo libplinkseq_la-vgroup.lo libplinkseq_la-allele.lo libplinkseq_la-individual.lo libplinkseq_la-indmap.lo libplinkseq_la-phmap.lo libplinkseq_la-permute.lo libplinkseq_la-crandom.lo libplinkseq_la-defs.lo libplinkseq_la-em.lo libplinkseq_la-bed.lo libplinkseq_la-varmeta.lo libplinkseq_la-pp.lo libplinkseq_la-pp.pb.lo libplinkseq_la-statistics.lo libplinkseq_la-dcdflib.lo libplinkseq_la-bgzf.lo libplinkseq_la-fisher.lo libplinkseq_la-glm.lo libplinkseq_la-matrix.lo libplinkseq_la-iterate.lo libplinkseq_la-vcfiterate.lo libplinkseq_la-netdb.lo libplinkseq_la-sqlite3.lo -lz -lprotobuf
[*] c++ -shared -fPIC -DPIC .libs/libplinkseq_la-eval.o .libs/libplinkseq_la-token.o .libs/libplinkseq_la-vcfz.o .libs/libplinkseq_la-gstore.o .libs/libplinkseq_la-globals.o .libs/libplinkseq_la-variant.o .libs/libplinkseq_la-svar.o .libs/libplinkseq_la-genotype.o .libs/libplinkseq_la-meta.o .libs/libplinkseq_la-regions.o .libs/libplinkseq_la-filemap.o .libs/libplinkseq_la-vcf.o .libs/libplinkseq_la-bcf.o .libs/libplinkseq_la-zfstream.o .libs/libplinkseq_la-sqlwrap.o .libs/libplinkseq_la-helper.o .libs/libplinkseq_la-locdb.o .libs/libplinkseq_la-vardb.o .libs/libplinkseq_la-segments.o .libs/libplinkseq_la-varfunc.o .libs/libplinkseq_la-variant.pb.o .libs/libplinkseq_la-refdb.o .libs/libplinkseq_la-seqdb.o .libs/libplinkseq_la-annot.o .libs/libplinkseq_la-inddb.o .libs/libplinkseq_la-mask.o .libs/libplinkseq_la-reffuncs.o .libs/libplinkseq_la-vgroup.o .libs/libplinkseq_la-allele.o .libs/libplinkseq_la-individual.o .libs/libplinkseq_la-indmap.o .libs/libplinkseq_la-phmap.o .libs/libplinkseq_la-permute.o .libs/libplinkseq_la-crandom.o .libs/libplinkseq_la-defs.o .libs/libplinkseq_la-em.o .libs/libplinkseq_la-bed.o .libs/libplinkseq_la-varmeta.o .libs/libplinkseq_la-pp.o .libs/libplinkseq_la-pp.pb.o .libs/libplinkseq_la-statistics.o .libs/libplinkseq_la-dcdflib.o .libs/libplinkseq_la-bgzf.o .libs/libplinkseq_la-fisher.o .libs/libplinkseq_la-glm.o .libs/libplinkseq_la-matrix.o .libs/libplinkseq_la-iterate.o .libs/libplinkseq_la-vcfiterate.o .libs/libplinkseq_la-netdb.o .libs/libplinkseq_la-sqlite3.o -Wl,-R -Wl,/tmp/work/biology/plinkseq/work/.buildlink/lib -Wl,-R -Wl,/tmp/work/biology/plinkseq/work/.buildlink/lib -lsocket -lnsl -L/tmp/work/biology/plinkseq/work/.buildlink/lib /tmp/work/biology/plinkseq/work/.buildlink/lib/libz.so -lprotobuf -O2 -msave-args -Wl,-rpath -Wl,/opt/local/lib -Wl,-h -Wl,libplinkseq.so.0 -o .libs/libplinkseq.so.0.0.0
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -shared -fPIC -DPIC .libs/libplinkseq_la-eval.o .libs/libplinkseq_la-token.o .libs/libplinkseq_la-vcfz.o .libs/libplinkseq_la-gstore.o .libs/libplinkseq_la-globals.o .libs/libplinkseq_la-variant.o .libs/libplinkseq_la-svar.o .libs/libplinkseq_la-genotype.o .libs/libplinkseq_la-meta.o .libs/libplinkseq_la-regions.o .libs/libplinkseq_la-filemap.o .libs/libplinkseq_la-vcf.o .libs/libplinkseq_la-bcf.o .libs/libplinkseq_la-zfstream.o .libs/libplinkseq_la-sqlwrap.o .libs/libplinkseq_la-helper.o .libs/libplinkseq_la-locdb.o .libs/libplinkseq_la-vardb.o .libs/libplinkseq_la-segments.o .libs/libplinkseq_la-varfunc.o .libs/libplinkseq_la-variant.pb.o .libs/libplinkseq_la-refdb.o .libs/libplinkseq_la-seqdb.o .libs/libplinkseq_la-annot.o .libs/libplinkseq_la-inddb.o .libs/libplinkseq_la-mask.o .libs/libplinkseq_la-reffuncs.o .libs/libplinkseq_la-vgroup.o .libs/libplinkseq_la-allele.o .libs/libplinkseq_la-individual.o .libs/libplinkseq_la-indmap.o .libs/libplinkseq_la-phmap.o .libs/libplinkseq_la-permute.o .libs/libplinkseq_la-crandom.o .libs/libplinkseq_la-defs.o .libs/libplinkseq_la-em.o .libs/libplinkseq_la-bed.o .libs/libplinkseq_la-varmeta.o .libs/libplinkseq_la-pp.o .libs/libplinkseq_la-pp.pb.o .libs/libplinkseq_la-statistics.o .libs/libplinkseq_la-dcdflib.o .libs/libplinkseq_la-bgzf.o .libs/libplinkseq_la-fisher.o .libs/libplinkseq_la-glm.o .libs/libplinkseq_la-matrix.o .libs/libplinkseq_la-iterate.o .libs/libplinkseq_la-vcfiterate.o .libs/libplinkseq_la-netdb.o .libs/libplinkseq_la-sqlite3.o -Wl,-rpath,/opt/local/lib -Wl,-rpath,/opt/local/lib -lsocket -lnsl -L/tmp/work/biology/plinkseq/work/.buildlink/lib -lz -lprotobuf -O2 -msave-args -Wl,-rpath,/opt/local/lib -Wl,-h -Wl,libplinkseq.so.0 -o .libs/libplinkseq.so.0.0.0 -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -I/tmp/work/biology/plinkseq/work/.buildlink/include -lumem
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/local/include -I/usr/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -MT pseq-util.o -MD -MP -MF .deps/pseq-util.Tpo -c -o pseq-util.o util.cpp
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[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/local/include -I/usr/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -MT pseq-ibs.o -MD -MP -MF .deps/pseq-ibs.Tpo -c -o pseq-ibs.o ibs.cpp
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[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/local/include -I/usr/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -MT pseq-func.o -MD -MP -MF .deps/pseq-func.Tpo -c -o pseq-func.o func.cpp
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[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/local/include -I/usr/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -MT pseq-ibd.o -MD -MP -MF .deps/pseq-ibd.Tpo -c -o pseq-ibd.o ibd.cpp
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[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/local/include -I/usr/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -MT pseq-loaders.o -MD -MP -MF .deps/pseq-loaders.Tpo -c -o pseq-loaders.o loaders.cpp
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[*] c++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include -Wl,-rpath -Wl,/opt/local/lib -o gcol gcol.o -lsocket -lnsl -L/tmp/work/biology/plinkseq/work/.buildlink/lib
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include -Wl,-rpath,/opt/local/lib -o gcol gcol.o -lsocket -lnsl -L/tmp/work/biology/plinkseq/work/.buildlink/lib -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -lumem
[*] c++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include -Wl,-rpath -Wl,/opt/local/lib -o behead behead.o -lsocket -lnsl -L/tmp/work/biology/plinkseq/work/.buildlink/lib
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include -Wl,-rpath,/opt/local/lib -o behead behead.o -lsocket -lnsl -L/tmp/work/biology/plinkseq/work/.buildlink/lib -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -lumem
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/local/include -I/usr/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -MT index_cgi-index.o -MD -MP -MF .deps/index_cgi-index.Tpo -c -o index_cgi-index.o index.cpp
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/tmp/work/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT index_cgi-index.o -MD -MP -MF .deps/index_cgi-index.Tpo -c -o index_cgi-index.o index.cpp -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc
[*] libtool --tag=CXX --mode=link g++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/local/include -I/usr/include -lsocket -lnsl -L/opt/local/lib -Wl,-R/opt/local/lib -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 -o index.cgi index_cgi-index.o ../lib/libplinkseq.la -ldl -lpthread -lz
<.> /opt/local/bin/libtool --tag=CXX --mode=link g++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include -lsocket -lnsl -L/tmp/work/biology/plinkseq/work/.buildlink/lib -Wl,-rpath,/opt/local/lib -o index.cgi index_cgi-index.o ../lib/libplinkseq.la -lpthread -lz
[*] /tmp/work/biology/plinkseq/work/.tools/bin/mkdir .libs
<.> /usr/bin/mkdir -p .libs
[*] c++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include -Wl,-rpath -Wl,/opt/local/lib -o .libs/index.cgi index_cgi-index.o -L/tmp/work/biology/plinkseq/work/.buildlink/lib ../lib/.libs/libplinkseq.so -lsocket -lnsl -lprotobuf -lpthread /tmp/work/biology/plinkseq/work/.buildlink/lib/libz.so -Wl,-R -Wl,/opt/local/lib -Wl,-R -Wl,/tmp/work/biology/plinkseq/work/.buildlink/lib
<.> /tmp/work/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/tmp/work/biology/plinkseq/work/.buildlink/include -Wl,-rpath,/opt/local/lib -o .libs/index.cgi index_cgi-index.o -L/tmp/work/biology/plinkseq/work/.buildlink/lib ../lib/.libs/libplinkseq.so -lsocket -lnsl -lprotobuf -lpthread -lz -Wl,-rpath,/opt/local/lib -Wl,-rpath,/opt/local/lib -std=c++17 -specs=/tmp/work/biology/plinkseq/work/.cwrapper/specs.pkgsrc -lumem
[*] /tmp/work/biology/plinkseq/work/.tools/bin/mkdir /tmp/work/biology/plinkseq/work/.destdir/opt/local/lib
<.> /usr/bin/mkdir -p /tmp/work/biology/plinkseq/work/.destdir/opt/local/lib
[*] libtool --mode=install /opt/local/bin/bsdinstall -c -o pbuild -g pbuild libplinkseq.la /tmp/work/biology/plinkseq/work/.destdir/opt/local/lib/libplinkseq.la
<.> /opt/local/bin/libtool --mode=install /opt/local/bin/bsdinstall -c -o pbuild -g pbuild libplinkseq.la /tmp/work/biology/plinkseq/work/.destdir/opt/local/lib/libplinkseq.la
[*] /tmp/work/biology/plinkseq/work/.tools/bin/mkdir /tmp/work/biology/plinkseq/work/.destdir/opt/local/bin
<.> /usr/bin/mkdir -p /tmp/work/biology/plinkseq/work/.destdir/opt/local/bin
[*] libtool --mode=install /opt/local/bin/bsdinstall -c -o pbuild -g pbuild -m 755 pseq /tmp/work/biology/plinkseq/work/.destdir/opt/local/bin/pseq
<.> /opt/local/bin/libtool --mode=install /opt/local/bin/bsdinstall -c -o pbuild -g pbuild -m 755 pseq /tmp/work/biology/plinkseq/work/.destdir/opt/local/bin/pseq
[*] libtool --mode=install /opt/local/bin/bsdinstall -c -o pbuild -g pbuild -m 755 pbrowse.cgi /tmp/work/biology/plinkseq/work/.destdir/opt/local/bin/pbrowse.cgi
<.> /opt/local/bin/libtool --mode=install /opt/local/bin/bsdinstall -c -o pbuild -g pbuild -m 755 pbrowse.cgi /tmp/work/biology/plinkseq/work/.destdir/opt/local/bin/pbrowse.cgi
[*] libtool --mode=install /opt/local/bin/bsdinstall -c -o pbuild -g pbuild -m 755 mongoose /tmp/work/biology/plinkseq/work/.destdir/opt/local/bin/mongoose
<.> /opt/local/bin/libtool --mode=install /opt/local/bin/bsdinstall -c -o pbuild -g pbuild -m 755 mongoose /tmp/work/biology/plinkseq/work/.destdir/opt/local/bin/mongoose
[*] libtool --mode=install /opt/local/bin/bsdinstall -c -o pbuild -g pbuild -m 755 tab2vcf /tmp/work/biology/plinkseq/work/.destdir/opt/local/bin/tab2vcf
<.> /opt/local/bin/libtool --mode=install /opt/local/bin/bsdinstall -c -o pbuild -g pbuild -m 755 tab2vcf /tmp/work/biology/plinkseq/work/.destdir/opt/local/bin/tab2vcf
[*] libtool --mode=install /opt/local/bin/bsdinstall -c -o pbuild -g pbuild -m 755 gcol /tmp/work/biology/plinkseq/work/.destdir/opt/local/bin/gcol
<.> /opt/local/bin/libtool --mode=install /opt/local/bin/bsdinstall -c -o pbuild -g pbuild -m 755 gcol /tmp/work/biology/plinkseq/work/.destdir/opt/local/bin/gcol
[*] libtool --mode=install /opt/local/bin/bsdinstall -c -o pbuild -g pbuild -m 755 behead /tmp/work/biology/plinkseq/work/.destdir/opt/local/bin/behead
<.> /opt/local/bin/libtool --mode=install /opt/local/bin/bsdinstall -c -o pbuild -g pbuild -m 755 behead /tmp/work/biology/plinkseq/work/.destdir/opt/local/bin/behead
[*] libtool --mode=install /opt/local/bin/bsdinstall -c -o pbuild -g pbuild -m 755 index.cgi /tmp/work/biology/plinkseq/work/.destdir/opt/local/bin/index.cgi
<.> /opt/local/bin/libtool --mode=install /opt/local/bin/bsdinstall -c -o pbuild -g pbuild -m 755 index.cgi /tmp/work/biology/plinkseq/work/.destdir/opt/local/bin/index.cgi