=> "/opt/local/bin/bmake" ["-C", "/data/jenkins/workspace/pkgsrc-trunk-x86_64/biology/py-multiqc", "configure", "PYTHON_VERSION_REQD=314", "BATCH=1", "DEPENDS_TARGET=/nonexistent"] => Checksum BLAKE2s OK for multiqc-1.25.2.tar.gz => Checksum SHA512 OK for multiqc-1.25.2.tar.gz ===> Installing dependencies for py314-multiqc-1.25.2nb1 ========================================================================== The following variables will affect the build process of this package, py314-multiqc-1.25.2nb1. Their current value is shown below: * PKGSRC_BLAS_TYPES = netlib openblas openblas_pthread openblas_openmp * PYTHON_VERSION_DEFAULT = 313 Based on these variables, the following variables have been set: * BLAS_INCLUDES = -I/opt/local/include/netlib * BLAS_LIBS = -lblas * BLAS_PC = blas * BLAS_TYPE = netlib * CBLAS_LIBS = -lcblas -lblas * CBLAS_PC = cblas * LAPACKE_LIBS = -llapacke -llapack -lblas * LAPACKE_PC = lapacke * LAPACK_LIBS = -llapack -lblas * LAPACK_PC = lapack * PYPACKAGE = python314 You may want to abort the process now with CTRL-C and change the value of variables in the first group before continuing. Be sure to run `/opt/local/bin/bmake clean' after the changes. ========================================================================== => Tool dependency py314-setuptools>=78: found py314-setuptools-84.0.0 => Tool dependency py314-build>=0: found py314-build-1.6.0 => Tool dependency py314-installer>=0.7.0nb1: found py314-installer-1.0.1 => Tool dependency cwrappers>=20150314: found cwrappers-20220403 => Tool dependency checkperms>=1.1: found checkperms-1.12 => Build dependency gcc13>=13.4.0: found gcc13-13.4.0 => Full dependency py314-humanize-[0-9]*: found py314-humanize-4.16.0 => Full dependency py314-importlib-metadata-[0-9]*: found py314-importlib-metadata-9.0.1 => Full dependency py314-orca-[0-9]*: found py314-orca-1.8nb1 => Full dependency py314-psutil-[0-9]*: found py314-psutil-7.2.2nb3 => Full dependency py314-packaging-[0-9]*: found py314-packaging-26.3 => Full dependency py314-pydantic>=2.7.0: found py314-pydantic-2.13.5 => Full dependency py314-typeguard-[0-9]*: found py314-typeguard-4.6.0 => Full dependency py314-tqdm-[0-9]*: found py314-tqdm-4.70.0 => Full dependency py314-jinja2>=3.0.0: found py314-jinja2-3.1.6 => Full dependency py314-rich-click-[0-9]*: found py314-rich-click-1.9.8 => Full dependency py314-coloredlogs-[0-9]*: found py314-coloredlogs-15.0.1 => Full dependency py314-plotly>=5.1.8: found py314-plotly-5.24.1nb1 => Full dependency py314-markdown-[0-9]*: found py314-markdown-3.10.3 => Full dependency py314-rich>=10: found py314-rich-15.0.0 => Full dependency py314-yaml>=4: found py314-yaml-6.0.3 => Full dependency py314-requests-[0-9]*: found py314-requests-2.34.2 => Full dependency py314-spectra>=0.0.10: found py314-spectra-0.0.11 => Full dependency py314-Pillow>=10: found py314-Pillow-12.3.0nb1 => Full dependency py314-click-[0-9]*: found py314-click-8.5.0 => Full dependency py314-natsort-[0-9]*: found py314-natsort-8.4.0nb1 => Full dependency gcc13-libs>=13.4.0: found gcc13-libs-13.4.0 => Full dependency py314-numpy>=1.20.3nb1: found py314-numpy-2.5.2nb1 => Full dependency python314>=3.14.0: found python314-3.14.7 => Full dependency blas>=3.9.0: found blas-3.12.1 => Full dependency cblas>=3.9.0: found cblas-3.12.1 => Full dependency gettext-lib>=0.22: found gettext-lib-1.0 => Full dependency libiconv>=1.9.1: found libiconv-1.19 => Full dependency lapack>=3.9.0: found lapack-3.12.1 => Full dependency lapacke>=3.9.0: found lapacke-3.12.1 ===> Overriding tools for py314-multiqc-1.25.2nb1 ===> Extracting for py314-multiqc-1.25.2nb1 ===> Patching for py314-multiqc-1.25.2nb1 => Applying pkgsrc patches for py314-multiqc-1.25.2nb1 => Verifying /data/jenkins/workspace/pkgsrc-trunk-x86_64/biology/py-multiqc/patches/patch-multiqc_multiqc.py => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-trunk-x86_64/biology/py-multiqc/patches/patch-multiqc_multiqc.py Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-multiqc_multiqc.py,v 1.2 2024/11/22 21:41:43 bacon Exp $ | |# Validate env at run time | |--- multiqc/multiqc.py.orig 2024-11-20 15:21:45.000000000 +0000 |+++ multiqc/multiqc.py -------------------------- Patching file multiqc/multiqc.py using Plan A... Hunk #1 succeeded at 12. done /usr/bin/rm /tmp/work/biology/py-multiqc/work/multiqc-1.25.2/multiqc/multiqc.py.orig ===> Creating toolchain wrappers for py314-multiqc-1.25.2nb1 /usr/bin/sed -e '/^#/d' -e 's,@LINK_ARCH_DEFAULT@,link_arch64,g' -e 's,@LINK_LIBGCC_DEFAULT@,link_libgcc_arch64,g' -e 's,@LIBGCC_PREFIX@,/opt/local/gcc13/x86_64-sun-solaris2.11,g' < ../../extra/gcc13-libs/files/specs.pkgsrc > /tmp/work/biology/py-multiqc/work/.cwrapper/specs.pkgsrc /usr/bin/ln -s /opt/local/lib/python3.14/site-packages/numpy/_core/lib/pkgconfig/numpy.pc /tmp/work/biology/py-multiqc/work/.buildlink/lib/pkgconfig/numpy.pc ===> Configuring for py314-multiqc-1.25.2nb1