[*] /home/pbulk/build/biology/stacks/work/.tools/bin/mkdir conf154924.dir <.> /usr/bin/mkdir -p conf154924.dir [*] /home/pbulk/build/biology/stacks/work/.tools/bin/mkdir -p . <.> /usr/bin/mkdir -p -p . [*] /home/pbulk/build/biology/stacks/work/.tools/bin/mkdir --version <.> /usr/bin/mkdir -p --version [*] /home/pbulk/build/biology/stacks/work/.tools/bin/mkdir .tst <.> /usr/bin/mkdir -p .tst [*] /home/pbulk/build/biology/stacks/work/.tools/bin/true <.> true [*] c++ --version <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 --version -I/home/pbulk/build/biology/stacks/work/.buildlink/include [*] c++ -v <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -v -I/home/pbulk/build/biology/stacks/work/.buildlink/include [*] c++ -V <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -V -I/home/pbulk/build/biology/stacks/work/.buildlink/include [*] c++ -qversion <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -qversion -I/home/pbulk/build/biology/stacks/work/.buildlink/include [*] c++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -lsocket -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 -L/opt/pkg/lib -Wl,-R/opt/pkg/lib -lintl -liconv conftest.cpp <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -lsocket -L/home/pbulk/build/biology/stacks/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib -lintl -liconv conftest.cpp [*] c++ -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -lsocket -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 -L/opt/pkg/lib -Wl,-R/opt/pkg/lib -lintl -liconv conftest.cpp <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -lsocket -L/home/pbulk/build/biology/stacks/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib -lintl -liconv conftest.cpp [*] c++ -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -lsocket -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 -L/opt/pkg/lib -Wl,-R/opt/pkg/lib -lintl -liconv conftest.cpp <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -lsocket -L/home/pbulk/build/biology/stacks/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib -lintl -liconv conftest.cpp [*] c++ -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.cpp <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.cpp [*] c++ -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.cpp <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.cpp [*] c++ -c -g -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.cpp <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -g -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.cpp [*] /home/pbulk/build/biology/stacks/work/.tools/bin/echo this is the am__doit target <.> echo this is the am__doit target [*] /home/pbulk/build/biology/stacks/work/.tools/bin/mkdir conftest.dir <.> /usr/bin/mkdir -p conftest.dir [*] /home/pbulk/build/biology/stacks/work/.tools/bin/mkdir sub <.> /usr/bin/mkdir -p sub [*] c++ -MT sub/conftest.o -MD -MP -MF sub/conftest.TPo -c -o sub/conftest.o sub/conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -MT sub/conftest.o -MD -MP -MF sub/conftest.TPo -c -o sub/conftest.o sub/conftest.c -I/home/pbulk/build/biology/stacks/work/.buildlink/include [*] cc --version <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 --version -gdwarf-2 -I/home/pbulk/build/biology/stacks/work/.buildlink/include [*] cc -v <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -v -gdwarf-2 -I/home/pbulk/build/biology/stacks/work/.buildlink/include [*] cc -V <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -V -gdwarf-2 -I/home/pbulk/build/biology/stacks/work/.buildlink/include [*] cc -qversion <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -qversion -gdwarf-2 -I/home/pbulk/build/biology/stacks/work/.buildlink/include [*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.c -gdwarf-2 [*] cc -c -g -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -g -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.c -gdwarf-2 [*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.c -gdwarf-2 [*] /home/pbulk/build/biology/stacks/work/.tools/bin/mkdir conftest.dir <.> /usr/bin/mkdir -p conftest.dir [*] /home/pbulk/build/biology/stacks/work/.tools/bin/mkdir sub <.> /usr/bin/mkdir -p sub [*] cc -MT sub/conftest.o -MD -MP -MF sub/conftest.TPo -c -o sub/conftest.o sub/conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -MT sub/conftest.o -MD -MP -MF sub/conftest.TPo -c -o sub/conftest.o sub/conftest.c -gdwarf-2 -I/home/pbulk/build/biology/stacks/work/.buildlink/include [*] cc -c conftest.c -o conftest2.o <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c conftest.c -o conftest2.o -gdwarf-2 -I/home/pbulk/build/biology/stacks/work/.buildlink/include [*] cc -c conftest.c -o conftest2.o <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c conftest.c -o conftest2.o -gdwarf-2 -I/home/pbulk/build/biology/stacks/work/.buildlink/include [*] cc -c conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c conftest.c -gdwarf-2 -I/home/pbulk/build/biology/stacks/work/.buildlink/include [*] cc -c conftest.c -o conftest2.o <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c conftest.c -o conftest2.o -gdwarf-2 -I/home/pbulk/build/biology/stacks/work/.buildlink/include [*] cc -c conftest.c -o conftest2.o <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c conftest.c -o conftest2.o -gdwarf-2 -I/home/pbulk/build/biology/stacks/work/.buildlink/include [*] c++ -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.cpp <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.cpp [*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.c -gdwarf-2 [*] cc -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -lsocket -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 -L/opt/pkg/lib -Wl,-R/opt/pkg/lib -lintl -liconv conftest.c -lgomp <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -lsocket -L/home/pbulk/build/biology/stacks/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib -lintl -liconv conftest.c -lgomp -gdwarf-2 [*] cc -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -lsocket -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 -L/opt/pkg/lib -Wl,-R/opt/pkg/lib -lintl -liconv conftest.c -lz -lgomp <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -lsocket -L/home/pbulk/build/biology/stacks/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib -lintl -liconv conftest.c -lz -lgomp -gdwarf-2 [*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.c -gdwarf-2 [*] cc -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -lsocket -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 -L/opt/pkg/lib -Wl,-R/opt/pkg/lib -lintl -liconv conftest.c -lz -lgomp <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -lsocket -L/home/pbulk/build/biology/stacks/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib -lintl -liconv conftest.c -lz -lgomp -gdwarf-2 [*] cc -E -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -E -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.c -gdwarf-2 [*] cc -E -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -E -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.c -gdwarf-2 [*] cc -E -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -E -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.c -gdwarf-2 [*] cc -E -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -E -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.c -gdwarf-2 [*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.c -gdwarf-2 [*] cc -E -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -E -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.c -gdwarf-2 [*] cc -E -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -E -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.c -gdwarf-2 [*] cc -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -lsocket -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 -L/opt/pkg/lib -Wl,-R/opt/pkg/lib -lintl -liconv conftest.c -lz -lgomp <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -lsocket -L/home/pbulk/build/biology/stacks/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib -lintl -liconv conftest.c -lz -lgomp -gdwarf-2 [*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.c -gdwarf-2 [*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.c -gdwarf-2 [*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.c -gdwarf-2 [*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.c -gdwarf-2 [*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.c -gdwarf-2 [*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.c -gdwarf-2 [*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.c -gdwarf-2 [*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.c -gdwarf-2 [*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.c -gdwarf-2 [*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.c -gdwarf-2 [*] cc -E -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -E -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.c -gdwarf-2 [*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.c -gdwarf-2 [*] cc -E -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -E -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.c -gdwarf-2 [*] cc -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -lsocket -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 -L/opt/pkg/lib -Wl,-R/opt/pkg/lib -lintl -liconv conftest.c -lz -lgomp <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -lsocket -L/home/pbulk/build/biology/stacks/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib -lintl -liconv conftest.c -lz -lgomp -gdwarf-2 [*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.c -gdwarf-2 [*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.c -gdwarf-2 [*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.c -gdwarf-2 [*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.c -gdwarf-2 [*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.c -gdwarf-2 [*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include conftest.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include conftest.c -gdwarf-2 [*] cc -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -lsocket -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 -L/opt/pkg/lib -Wl,-R/opt/pkg/lib -lintl -liconv conftest.c -lz -lgomp <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -lsocket -L/home/pbulk/build/biology/stacks/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib -lintl -liconv conftest.c -lz -lgomp -gdwarf-2 [*] cc -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -lsocket -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 -L/opt/pkg/lib -Wl,-R/opt/pkg/lib -lintl -liconv conftest.c -lz -lgomp <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -lsocket -L/home/pbulk/build/biology/stacks/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib -lintl -liconv conftest.c -lz -lgomp -gdwarf-2 [*] cc -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -lsocket -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 -L/opt/pkg/lib -Wl,-R/opt/pkg/lib -lintl -liconv conftest.c -lz -lgomp <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -lsocket -L/home/pbulk/build/biology/stacks/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib -lintl -liconv conftest.c -lz -lgomp -gdwarf-2 [*] cc -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -lsocket -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 -L/opt/pkg/lib -Wl,-R/opt/pkg/lib -lintl -liconv conftest.c -lz -lgomp <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -lsocket -L/home/pbulk/build/biology/stacks/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib -lintl -liconv conftest.c -lz -lgomp -gdwarf-2 [*] cc -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -lsocket -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 -L/opt/pkg/lib -Wl,-R/opt/pkg/lib -lintl -liconv conftest.c -lz -lgomp <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -lsocket -L/home/pbulk/build/biology/stacks/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib -lintl -liconv conftest.c -lz -lgomp -gdwarf-2 [*] cc -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -lsocket -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 -L/opt/pkg/lib -Wl,-R/opt/pkg/lib -lintl -liconv conftest.c -lz -lgomp <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -lsocket -L/home/pbulk/build/biology/stacks/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib -lintl -liconv conftest.c -lz -lgomp -gdwarf-2 [*] cc -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -lsocket -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 -L/opt/pkg/lib -Wl,-R/opt/pkg/lib -lintl -liconv conftest.c -lz -lgomp <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -lsocket -L/home/pbulk/build/biology/stacks/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib -lintl -liconv conftest.c -lz -lgomp -gdwarf-2 [*] cc -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -lsocket -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 -L/opt/pkg/lib -Wl,-R/opt/pkg/lib -lintl -liconv conftest.c -lz -lgomp <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -lsocket -L/home/pbulk/build/biology/stacks/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib -lintl -liconv conftest.c -lz -lgomp -gdwarf-2 [*] c++ -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -lsocket -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64 -L/opt/pkg/lib -Wl,-R/opt/pkg/lib -lintl -liconv conftest.cpp -lz -lgomp <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -lsocket -L/home/pbulk/build/biology/stacks/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib -lintl -liconv conftest.cpp -lz -lgomp [*] /home/pbulk/build/biology/stacks/work/.tools/bin/mkdir conf174459.dir <.> /usr/bin/mkdir -p conf174459.dir [*] /home/pbulk/build/biology/stacks/work/.tools/bin/mkdir -p . <.> /usr/bin/mkdir -p -p . [*] /home/pbulk/build/biology/stacks/work/.tools/bin/mkdir -p ./src/.deps <.> /usr/bin/mkdir -p -p ./src/.deps [*] /home/pbulk/build/biology/stacks/work/.tools/bin/mkdir -p htslib/./.deps <.> /usr/bin/mkdir -p -p htslib/./.deps [*] /home/pbulk/build/biology/stacks/work/.tools/bin/mkdir -p htslib/cram/.deps <.> /usr/bin/mkdir -p -p htslib/cram/.deps [*] /home/pbulk/build/biology/stacks/work/.tools/bin/mkdir -p htslib/os/.deps <.> /usr/bin/mkdir -p -p htslib/os/.deps [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT bgzip.o -MD -MP -MF .deps/bgzip.Tpo -c -o bgzip.o bgzip.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT bgzip.o -MD -MP -MF .deps/bgzip.Tpo -c -o bgzip.o bgzip.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT bcf_sr_sort.o -MD -MP -MF .deps/bcf_sr_sort.Tpo -c -o bcf_sr_sort.o bcf_sr_sort.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT bcf_sr_sort.o -MD -MP -MF .deps/bcf_sr_sort.Tpo -c -o bcf_sr_sort.o bcf_sr_sort.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT bgzf.o -MD -MP -MF .deps/bgzf.Tpo -c -o bgzf.o bgzf.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT bgzf.o -MD -MP -MF .deps/bgzf.Tpo -c -o bgzf.o bgzf.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT errmod.o -MD -MP -MF .deps/errmod.Tpo -c -o errmod.o errmod.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT errmod.o -MD -MP -MF .deps/errmod.Tpo -c -o errmod.o errmod.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT faidx.o -MD -MP -MF .deps/faidx.Tpo -c -o faidx.o faidx.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT faidx.o -MD -MP -MF .deps/faidx.Tpo -c -o faidx.o faidx.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT hfile.o -MD -MP -MF .deps/hfile.Tpo -c -o hfile.o hfile.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT hfile.o -MD -MP -MF .deps/hfile.Tpo -c -o hfile.o hfile.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT hts.o -MD -MP -MF .deps/hts.Tpo -c -o hts.o hts.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT hts.o -MD -MP -MF .deps/hts.Tpo -c -o hts.o hts.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT hfile_net.o -MD -MP -MF .deps/hfile_net.Tpo -c -o hfile_net.o hfile_net.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT hfile_net.o -MD -MP -MF .deps/hfile_net.Tpo -c -o hfile_net.o hfile_net.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT hts_os.o -MD -MP -MF .deps/hts_os.Tpo -c -o hts_os.o hts_os.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT hts_os.o -MD -MP -MF .deps/hts_os.Tpo -c -o hts_os.o hts_os.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT htsfile.o -MD -MP -MF .deps/htsfile.Tpo -c -o htsfile.o htsfile.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT htsfile.o -MD -MP -MF .deps/htsfile.Tpo -c -o htsfile.o htsfile.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT kfunc.o -MD -MP -MF .deps/kfunc.Tpo -c -o kfunc.o kfunc.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT kfunc.o -MD -MP -MF .deps/kfunc.Tpo -c -o kfunc.o kfunc.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT knetfile.o -MD -MP -MF .deps/knetfile.Tpo -c -o knetfile.o knetfile.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT knetfile.o -MD -MP -MF .deps/knetfile.Tpo -c -o knetfile.o knetfile.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT kstring.o -MD -MP -MF .deps/kstring.Tpo -c -o kstring.o kstring.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT kstring.o -MD -MP -MF .deps/kstring.Tpo -c -o kstring.o kstring.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT md5.o -MD -MP -MF .deps/md5.Tpo -c -o md5.o md5.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT md5.o -MD -MP -MF .deps/md5.Tpo -c -o md5.o md5.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT multipart.o -MD -MP -MF .deps/multipart.Tpo -c -o multipart.o multipart.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT multipart.o -MD -MP -MF .deps/multipart.Tpo -c -o multipart.o multipart.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT probaln.o -MD -MP -MF .deps/probaln.Tpo -c -o probaln.o probaln.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT probaln.o -MD -MP -MF .deps/probaln.Tpo -c -o probaln.o probaln.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT realn.o -MD -MP -MF .deps/realn.Tpo -c -o realn.o realn.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT realn.o -MD -MP -MF .deps/realn.Tpo -c -o realn.o realn.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT regidx.o -MD -MP -MF .deps/regidx.Tpo -c -o regidx.o regidx.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT regidx.o -MD -MP -MF .deps/regidx.Tpo -c -o regidx.o regidx.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT sam.o -MD -MP -MF .deps/sam.Tpo -c -o sam.o sam.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT sam.o -MD -MP -MF .deps/sam.Tpo -c -o sam.o sam.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT synced_bcf_reader.o -MD -MP -MF .deps/synced_bcf_reader.Tpo -c -o synced_bcf_reader.o synced_bcf_reader.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT synced_bcf_reader.o -MD -MP -MF .deps/synced_bcf_reader.Tpo -c -o synced_bcf_reader.o synced_bcf_reader.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT tabix.o -MD -MP -MF .deps/tabix.Tpo -c -o tabix.o tabix.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT tabix.o -MD -MP -MF .deps/tabix.Tpo -c -o tabix.o tabix.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT tbx.o -MD -MP -MF .deps/tbx.Tpo -c -o tbx.o tbx.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT tbx.o -MD -MP -MF .deps/tbx.Tpo -c -o tbx.o tbx.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT textutils.o -MD -MP -MF .deps/textutils.Tpo -c -o textutils.o textutils.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT textutils.o -MD -MP -MF .deps/textutils.Tpo -c -o textutils.o textutils.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT thread_pool.o -MD -MP -MF .deps/thread_pool.Tpo -c -o thread_pool.o thread_pool.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT thread_pool.o -MD -MP -MF .deps/thread_pool.Tpo -c -o thread_pool.o thread_pool.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT vcf.o -MD -MP -MF .deps/vcf.Tpo -c -o vcf.o vcf.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT vcf.o -MD -MP -MF .deps/vcf.Tpo -c -o vcf.o vcf.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT vcf_sweep.o -MD -MP -MF .deps/vcf_sweep.Tpo -c -o vcf_sweep.o vcf_sweep.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT vcf_sweep.o -MD -MP -MF .deps/vcf_sweep.Tpo -c -o vcf_sweep.o vcf_sweep.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT vcfutils.o -MD -MP -MF .deps/vcfutils.Tpo -c -o vcfutils.o vcfutils.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT vcfutils.o -MD -MP -MF .deps/vcfutils.Tpo -c -o vcfutils.o vcfutils.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT os/rand.o -MD -MP -MF os/.deps/rand.Tpo -c -o os/rand.o os/rand.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT os/rand.o -MD -MP -MF os/.deps/rand.Tpo -c -o os/rand.o os/rand.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT cram/cram_codecs.o -MD -MP -MF cram/.deps/cram_codecs.Tpo -c -o cram/cram_codecs.o cram/cram_codecs.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT cram/cram_codecs.o -MD -MP -MF cram/.deps/cram_codecs.Tpo -c -o cram/cram_codecs.o cram/cram_codecs.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT cram/cram_decode.o -MD -MP -MF cram/.deps/cram_decode.Tpo -c -o cram/cram_decode.o cram/cram_decode.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT cram/cram_decode.o -MD -MP -MF cram/.deps/cram_decode.Tpo -c -o cram/cram_decode.o cram/cram_decode.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT cram/cram_encode.o -MD -MP -MF cram/.deps/cram_encode.Tpo -c -o cram/cram_encode.o cram/cram_encode.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT cram/cram_encode.o -MD -MP -MF cram/.deps/cram_encode.Tpo -c -o cram/cram_encode.o cram/cram_encode.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT cram/cram_external.o -MD -MP -MF cram/.deps/cram_external.Tpo -c -o cram/cram_external.o cram/cram_external.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT cram/cram_external.o -MD -MP -MF cram/.deps/cram_external.Tpo -c -o cram/cram_external.o cram/cram_external.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT cram/cram_index.o -MD -MP -MF cram/.deps/cram_index.Tpo -c -o cram/cram_index.o cram/cram_index.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT cram/cram_index.o -MD -MP -MF cram/.deps/cram_index.Tpo -c -o cram/cram_index.o cram/cram_index.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT cram/cram_io.o -MD -MP -MF cram/.deps/cram_io.Tpo -c -o cram/cram_io.o cram/cram_io.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT cram/cram_io.o -MD -MP -MF cram/.deps/cram_io.Tpo -c -o cram/cram_io.o cram/cram_io.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT cram/cram_samtools.o -MD -MP -MF cram/.deps/cram_samtools.Tpo -c -o cram/cram_samtools.o cram/cram_samtools.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT cram/cram_samtools.o -MD -MP -MF cram/.deps/cram_samtools.Tpo -c -o cram/cram_samtools.o cram/cram_samtools.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT cram/cram_stats.o -MD -MP -MF cram/.deps/cram_stats.Tpo -c -o cram/cram_stats.o cram/cram_stats.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT cram/cram_stats.o -MD -MP -MF cram/.deps/cram_stats.Tpo -c -o cram/cram_stats.o cram/cram_stats.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT cram/files.o -MD -MP -MF cram/.deps/files.Tpo -c -o cram/files.o cram/files.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT cram/files.o -MD -MP -MF cram/.deps/files.Tpo -c -o cram/files.o cram/files.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT cram/mFILE.o -MD -MP -MF cram/.deps/mFILE.Tpo -c -o cram/mFILE.o cram/mFILE.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT cram/mFILE.o -MD -MP -MF cram/.deps/mFILE.Tpo -c -o cram/mFILE.o cram/mFILE.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT cram/open_trace_file.o -MD -MP -MF cram/.deps/open_trace_file.Tpo -c -o cram/open_trace_file.o cram/open_trace_file.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT cram/open_trace_file.o -MD -MP -MF cram/.deps/open_trace_file.Tpo -c -o cram/open_trace_file.o cram/open_trace_file.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT cram/pooled_alloc.o -MD -MP -MF cram/.deps/pooled_alloc.Tpo -c -o cram/pooled_alloc.o cram/pooled_alloc.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT cram/pooled_alloc.o -MD -MP -MF cram/.deps/pooled_alloc.Tpo -c -o cram/pooled_alloc.o cram/pooled_alloc.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT cram/rANS_static.o -MD -MP -MF cram/.deps/rANS_static.Tpo -c -o cram/rANS_static.o cram/rANS_static.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT cram/rANS_static.o -MD -MP -MF cram/.deps/rANS_static.Tpo -c -o cram/rANS_static.o cram/rANS_static.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT cram/sam_header.o -MD -MP -MF cram/.deps/sam_header.Tpo -c -o cram/sam_header.o cram/sam_header.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT cram/sam_header.o -MD -MP -MF cram/.deps/sam_header.Tpo -c -o cram/sam_header.o cram/sam_header.c -gdwarf-2 [*] cc -DHAVE_CONFIG_H -I. -I.. -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT cram/string_alloc.o -MD -MP -MF cram/.deps/string_alloc.Tpo -c -o cram/string_alloc.o cram/string_alloc.c <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT cram/string_alloc.o -MD -MP -MF cram/.deps/string_alloc.Tpo -c -o cram/string_alloc.o cram/string_alloc.c -gdwarf-2 [*] c++ -DHAVE_CONFIG_H -I. -I./htslib -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT src/file_io.o -MD -MP -MF src/.deps/file_io.Tpo -c -o src/file_io.o src/file_io.cc <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I./htslib -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT src/file_io.o -MD -MP -MF src/.deps/file_io.Tpo -c -o src/file_io.o src/file_io.cc [*] c++ -DHAVE_CONFIG_H -I. -I./htslib -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT src/write.o -MD -MP -MF src/.deps/write.Tpo -c -o src/write.o src/write.cc <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I./htslib -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT src/write.o -MD -MP -MF src/.deps/write.Tpo -c -o src/write.o src/write.cc [*] c++ -DHAVE_CONFIG_H -I. -I./htslib -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT src/aln_utils.o -MD -MP -MF src/.deps/aln_utils.Tpo -c -o src/aln_utils.o src/aln_utils.cc <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I./htslib -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT src/aln_utils.o -MD -MP -MF src/.deps/aln_utils.Tpo -c -o src/aln_utils.o src/aln_utils.cc [*] c++ -DHAVE_CONFIG_H -I. -I./htslib -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT src/clean.o -MD -MP -MF src/.deps/clean.Tpo -c -o src/clean.o src/clean.cc <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I./htslib -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT src/clean.o -MD -MP -MF src/.deps/clean.Tpo -c -o src/clean.o src/clean.cc [*] c++ -DHAVE_CONFIG_H -I. -I./htslib -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT src/BamI.o -MD -MP -MF src/.deps/BamI.Tpo -c -o src/BamI.o src/BamI.cc <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I./htslib -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT src/BamI.o -MD -MP -MF src/.deps/BamI.Tpo -c -o src/BamI.o src/BamI.cc [*] c++ -DHAVE_CONFIG_H -I. -I./htslib -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT src/catalog_utils.o -MD -MP -MF src/.deps/catalog_utils.Tpo -c -o src/catalog_utils.o src/catalog_utils.cc <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I./htslib -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT src/catalog_utils.o -MD -MP -MF src/.deps/catalog_utils.Tpo -c -o src/catalog_utils.o src/catalog_utils.cc [*] c++ -DHAVE_CONFIG_H -I. -I./htslib -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT src/cmb.o -MD -MP -MF src/.deps/cmb.Tpo -c -o src/cmb.o src/cmb.cc <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I./htslib -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT src/cmb.o -MD -MP -MF src/.deps/cmb.Tpo -c -o src/cmb.o src/cmb.cc [*] c++ -DHAVE_CONFIG_H -I. -I./htslib -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT src/constants.o -MD -MP -MF src/.deps/constants.Tpo -c -o src/constants.o src/constants.cc <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I./htslib -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT src/constants.o -MD -MP -MF src/.deps/constants.Tpo -c -o src/constants.o src/constants.cc [*] c++ -DHAVE_CONFIG_H -I. -I./htslib -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT src/DNANSeq.o -MD -MP -MF src/.deps/DNANSeq.Tpo -c -o src/DNANSeq.o src/DNANSeq.cc <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I./htslib -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT src/DNANSeq.o -MD -MP -MF src/.deps/DNANSeq.Tpo -c -o src/DNANSeq.o src/DNANSeq.cc [*] c++ -DHAVE_CONFIG_H -I. -I./htslib -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT src/DNASeq4.o -MD -MP -MF src/.deps/DNASeq4.Tpo -c -o src/DNASeq4.o src/DNASeq4.cc <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I./htslib -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT src/DNASeq4.o -MD -MP -MF src/.deps/DNASeq4.Tpo -c -o src/DNASeq4.o src/DNASeq4.cc [*] c++ -DHAVE_CONFIG_H -I. -I./htslib -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT src/DNASeq.o -MD -MP -MF src/.deps/DNASeq.Tpo -c -o src/DNASeq.o src/DNASeq.cc <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I./htslib -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT src/DNASeq.o -MD -MP -MF src/.deps/DNASeq.Tpo -c -o src/DNASeq.o src/DNASeq.cc [*] c++ -DHAVE_CONFIG_H -I. -I./htslib -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT src/gzFasta.o -MD -MP -MF src/.deps/gzFasta.Tpo -c -o src/gzFasta.o src/gzFasta.cc <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I./htslib -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT src/gzFasta.o -MD -MP -MF src/.deps/gzFasta.Tpo -c -o src/gzFasta.o src/gzFasta.cc [*] c++ -DHAVE_CONFIG_H -I. -I./htslib -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT src/input.o -MD -MP -MF src/.deps/input.Tpo -c -o src/input.o src/input.cc <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I./htslib -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT src/input.o -MD -MP -MF src/.deps/input.Tpo -c -o src/input.o src/input.cc [*] c++ -DHAVE_CONFIG_H -I. -I./htslib -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT src/kmers.o -MD -MP -MF src/.deps/kmers.Tpo -c -o src/kmers.o src/kmers.cc <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I./htslib -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT src/kmers.o -MD -MP -MF src/.deps/kmers.Tpo -c -o src/kmers.o src/kmers.cc [*] c++ -DHAVE_CONFIG_H -I. -I./htslib -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT src/locus.o -MD -MP -MF src/.deps/locus.Tpo -c -o src/locus.o src/locus.cc <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I./htslib -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT src/locus.o -MD -MP -MF src/.deps/locus.Tpo -c -o src/locus.o src/locus.cc [*] c++ -DHAVE_CONFIG_H -I. -I./htslib -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT src/log_utils.o -MD -MP -MF src/.deps/log_utils.Tpo -c -o src/log_utils.o src/log_utils.cc <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I./htslib -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT src/log_utils.o -MD -MP -MF src/.deps/log_utils.Tpo -c -o src/log_utils.o src/log_utils.cc [*] c++ -DHAVE_CONFIG_H -I. -I./htslib -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT src/MetaPopInfo.o -MD -MP -MF src/.deps/MetaPopInfo.Tpo -c -o src/MetaPopInfo.o src/MetaPopInfo.cc <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I./htslib -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT src/MetaPopInfo.o -MD -MP -MF src/.deps/MetaPopInfo.Tpo -c -o src/MetaPopInfo.o src/MetaPopInfo.cc [*] c++ -DHAVE_CONFIG_H -I. -I./htslib -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT src/models.o -MD -MP -MF src/.deps/models.Tpo -c -o src/models.o src/models.cc <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I./htslib -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT src/models.o -MD -MP -MF src/.deps/models.Tpo -c -o src/models.o src/models.cc [*] c++ -DHAVE_CONFIG_H -I. -I./htslib -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -I/usr/include -I/opt/pkg/include/python3.12 -I/opt/pkg/include -MT src/mstack.o -MD -MP -MF src/.deps/mstack.Tpo -c -o src/mstack.o src/mstack.cc <.> /home/pbulk/build/biology/stacks/work/.gcc/bin/g++ -std=c++14 -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I./htslib -I/home/pbulk/build/biology/stacks/work/.buildlink/include/python3.12 -I/home/pbulk/build/biology/stacks/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fopenmp -MT src/mstack.o -MD -MP -MF src/.deps/mstack.Tpo -c -o src/mstack.o src/mstack.cc