+ case "${usergroup_phase}" in
+ local run_cmd
+ run_cmd=run_su
+ shift
+ run_su /opt/pkg/bin/bmake stage-install BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/R-RNetCDF-2.9.2nb3/work.log
+ su pbulk -c '"$@"' make /opt/pkg/bin/bmake stage-install BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/R-RNetCDF-2.9.2nb3/work.log
===> Installing for R-RNetCDF-2.9.2nb3
=> Generating pre-install file lists
=> Creating installation directories
* installing *source* package 'RNetCDF' ...
** package 'RNetCDF' successfully unpacked and MD5 sums checked
** using staged installation
configure: Find compiler/linker variables from environment:
checking CFLAGS... -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/usr/include
checking CPPFLAGS... -I/opt/pkg/include -I/usr/include
checking LDFLAGS... -L/opt/pkg/lib -Wl,-R/opt/pkg/lib -lintl -liconv -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64
checking LIBS... 
configure: Select C compiler:
checking C compiler from --with-mpicc... 
checking C compiler from R... gcc
configure: Find compiler/linker variables from R:
checking R_CFLAGS... -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/pkg/include -I/opt/pkg/include/glib-2.0 -I/opt/pkg/include/gio-unix-2.0 -I/opt/pkg/lib/glib-2.0/include -I/usr/include -I/opt/pkg/include/freetype2 -I/opt/pkg/include/harfbuzz -I/opt/pkg/include/ncurses
checking R_CPPFLAGS... -I/opt/pkg/include -I/opt/pkg/include/glib-2.0 -I/opt/pkg/include/gio-unix-2.0 -I/opt/pkg/lib/glib-2.0/include -I/usr/include -I/opt/pkg/include/freetype2 -I/opt/pkg/include/harfbuzz -I/opt/pkg/include/ncurses
checking R_LDFLAGS... -Wl,-R/opt/pkg/lib/R/lib -L/opt/pkg/lib -Wl,-R/opt/pkg/lib -liconv -lintl -pthread -L/usr/lib/amd64 -Wl,-R/usr/lib/amd64
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking for gcc options needed to detect all undeclared functions... none needed
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking whether _WIN32 is declared... no
checking whether __APPLE__ is declared... no
configure: Operating system is Unix-alike
checking for nc-config... yes
configure: Check compiler/linker variables from nc-config:
checking NC_CC... gcc
checking NC_CC matches selected C compiler... yes
checking nc-config --cflags... -I/opt/pkg/include -I/usr/include -I/opt/pkg/include
checking nc-config --libs ... -L/opt/pkg/lib -lnetcdf
configure: Check compiler type sizes and language features
checking size of int... 0
checking size of long long... 0
checking size of size_t... 0
checking for C/C++ restrict keyword... __restrict__
configure: Check NetCDF features:
checking for netcdf.h... yes
checking for library containing nc_open... no
configure: error: netcdf library was not linked - defining LDFLAGS may help
ERROR: configuration failed for package 'RNetCDF'
* removing '/home/pbulk/build/math/R-RNetCDF/work/.destdir/opt/pkg/lib/R/library/RNetCDF'
*** Error code 1

Stop.
bmake[1]: stopped making "stage-install" in /data/jenkins/workspace/pkgsrc-upstream-trunk/math/R-RNetCDF
*** Error code 1

Stop.
bmake: stopped making "stage-install" in /data/jenkins/workspace/pkgsrc-upstream-trunk/math/R-RNetCDF