+ case "${usergroup_phase}" in
+ local run_cmd
+ run_cmd=run_su
+ shift
+ run_su /opt/pkg/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/subread-2.0.8/work.log
+ su pbulk -c '"$@"' make /opt/pkg/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/subread-2.0.8/work.log
===> Building for subread-2.0.8
gcc -DMAKE_FOR_EXON -DMAKE_STANDALONE -DSUBREAD_VERSION=\""2.0.8"\" -D_FILE_OFFSET_BITS=64 -fcommon -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include -c -o core.o core.c
gcc -DMAKE_FOR_EXON -DMAKE_STANDALONE -DSUBREAD_VERSION=\""2.0.8"\" -D_FILE_OFFSET_BITS=64 -fcommon -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include -c -o core-junction.o core-junction.c
gcc -DMAKE_FOR_EXON -DMAKE_STANDALONE -DSUBREAD_VERSION=\""2.0.8"\" -D_FILE_OFFSET_BITS=64 -fcommon -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include -c -o core-indel.o core-indel.c
gcc -DMAKE_FOR_EXON -DMAKE_STANDALONE -DSUBREAD_VERSION=\""2.0.8"\" -D_FILE_OFFSET_BITS=64 -fcommon -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include -c -o sambam-file.o sambam-file.c
gcc -DMAKE_FOR_EXON -DMAKE_STANDALONE -DSUBREAD_VERSION=\""2.0.8"\" -D_FILE_OFFSET_BITS=64 -fcommon -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include -c -o sublog.o sublog.c
gcc -DMAKE_FOR_EXON -DMAKE_STANDALONE -DSUBREAD_VERSION=\""2.0.8"\" -D_FILE_OFFSET_BITS=64 -fcommon -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include -c -o gene-algorithms.o gene-algorithms.c
gcc -DMAKE_FOR_EXON -DMAKE_STANDALONE -DSUBREAD_VERSION=\""2.0.8"\" -D_FILE_OFFSET_BITS=64 -fcommon -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include -c -o hashtable.o hashtable.c
gcc -DMAKE_FOR_EXON -DMAKE_STANDALONE -DSUBREAD_VERSION=\""2.0.8"\" -D_FILE_OFFSET_BITS=64 -fcommon -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include -c -o input-files.o input-files.c
gcc -DMAKE_FOR_EXON -DMAKE_STANDALONE -DSUBREAD_VERSION=\""2.0.8"\" -D_FILE_OFFSET_BITS=64 -fcommon -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include -c -o sorted-hashtable.o sorted-hashtable.c
gcc -DMAKE_FOR_EXON -DMAKE_STANDALONE -DSUBREAD_VERSION=\""2.0.8"\" -D_FILE_OFFSET_BITS=64 -fcommon -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include -c -o gene-value-index.o gene-value-index.c
gcc -DMAKE_FOR_EXON -DMAKE_STANDALONE -DSUBREAD_VERSION=\""2.0.8"\" -D_FILE_OFFSET_BITS=64 -fcommon -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include -c -o exon-algorithms.o exon-algorithms.c
gcc -DMAKE_FOR_EXON -DMAKE_STANDALONE -DSUBREAD_VERSION=\""2.0.8"\" -D_FILE_OFFSET_BITS=64 -fcommon -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include -c -o HelperFunctions.o HelperFunctions.c
HelperFunctions.c: In function 'get_free_total_mem':
HelperFunctions.c:2749:5: warning: implicit declaration of function 'sysinfo' [-Wimplicit-function-declaration]
2749 | sysinfo(&sinf);
| ^~~~~~~
HelperFunctions.c:2752:34: error: 'struct sysinfo' has no member named 'bufferram'
2752 | *free_mem = cached_mem + sinf.bufferram+sinf.freeram;
| ^
HelperFunctions.c:2752:49: error: 'struct sysinfo' has no member named 'freeram'
2752 | *free_mem = cached_mem + sinf.bufferram+sinf.freeram;
| ^
HelperFunctions.c:2753:18: error: 'struct sysinfo' has no member named 'totalram'
2753 | *total = sinf.totalram;
| ^
gmake: *** [<builtin>: HelperFunctions.o] Error 1
gmake: *** Waiting for unfinished jobs....
*** Error code 2
Stop.
bmake[1]: stopped making "all" in /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/subread
*** Error code 1
Stop.
bmake: stopped making "all" in /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/subread