+ case "${usergroup_phase}" in + local run_cmd + run_cmd=run_su + shift + run_su /opt/pkg/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/plinkseq-0.08nb15/work.log + su pbulk -c '"$@"' make /opt/pkg/bin/bmake all BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/plinkseq-0.08nb15/work.log ===> Building for plinkseq-0.08nb15 cd /home/pbulk/build/biology/plinkseq/work/plinkseq-0.08/lib && protoc --cpp_out=. pp.proto && mv pp.pb.cc pp.pb.cpp cd /home/pbulk/build/biology/plinkseq/work/plinkseq-0.08/lib && protoc --cpp_out=. variant.proto && mv variant.pb.cc variant.pb.cpp --- all --- /opt/pkg/bin/bmake all-recursive --- all-recursive --- Making all in lib --- libplinkseq_la-eval.lo --- --- libplinkseq_la-token.lo --- --- libplinkseq_la-vcfz.lo --- --- libplinkseq_la-gstore.lo --- --- libplinkseq_la-eval.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-eval.lo -MD -MP -MF .deps/libplinkseq_la-eval.Tpo -c -o libplinkseq_la-eval.lo `test -f 'eval.cpp' || echo './'`eval.cpp --- libplinkseq_la-token.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-token.lo -MD -MP -MF .deps/libplinkseq_la-token.Tpo -c -o libplinkseq_la-token.lo `test -f 'token.cpp' || echo './'`token.cpp --- libplinkseq_la-vcfz.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-vcfz.lo -MD -MP -MF .deps/libplinkseq_la-vcfz.Tpo -c -o libplinkseq_la-vcfz.lo `test -f 'vcfz.cpp' || echo './'`vcfz.cpp --- libplinkseq_la-gstore.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-gstore.lo -MD -MP -MF .deps/libplinkseq_la-gstore.Tpo -c -o libplinkseq_la-gstore.lo `test -f 'gstore.cpp' || echo './'`gstore.cpp --- libplinkseq_la-vcfz.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-vcfz.lo -MD -MP -MF .deps/libplinkseq_la-vcfz.Tpo -c vcfz.cpp -fPIC -DPIC -o .libs/libplinkseq_la-vcfz.o --- libplinkseq_la-gstore.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-gstore.lo -MD -MP -MF .deps/libplinkseq_la-gstore.Tpo -c gstore.cpp -fPIC -DPIC -o .libs/libplinkseq_la-gstore.o --- libplinkseq_la-token.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-token.lo -MD -MP -MF .deps/libplinkseq_la-token.Tpo -c token.cpp -fPIC -DPIC -o .libs/libplinkseq_la-token.o --- libplinkseq_la-eval.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-eval.lo -MD -MP -MF .deps/libplinkseq_la-eval.Tpo -c eval.cpp -fPIC -DPIC -o .libs/libplinkseq_la-eval.o --- libplinkseq_la-gstore.lo --- In file included from meta.h:13, from individual.h:8, from genotype.h:11, from variant.h:14, from gstore.h:6, from gstore.cpp:2: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-token.lo --- In file included from meta.h:13, from individual.h:8, from genotype.h:11, from variant.h:14, from token.h:4, from token.cpp:2: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-vcfz.lo --- In file included from vcfz.h:5, from vcfz.cpp:2: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-eval.lo --- In file included from meta.h:13, from individual.h:8, from genotype.h:11, from variant.h:14, from token.h:4, from eval.h:4, from eval.cpp:8: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ eval.h: In member function 'bool Eval::genmeta(bool)': eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ --- libplinkseq_la-token.lo --- In file included from token.cpp:3: eval.h: In member function 'bool Eval::genmeta(bool)': eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ --- libplinkseq_la-gstore.lo --- In file included from mask.h:8, from vardb.h:8, from gstore.h:15: eval.h: In member function 'bool Eval::genmeta(bool)': eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ --- libplinkseq_la-token.lo --- In file included from gstore.h:15, from token.cpp:5: vardb.h: In member function 'bool VarDBase::compression(bool)': vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ --- libplinkseq_la-gstore.lo --- vardb.h: In member function 'bool VarDBase::compression(bool)': vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ --- libplinkseq_la-vcfz.lo --- In file included from mask.h:8, from vardb.h:8, from vcfz.cpp:4: eval.h: In member function 'bool Eval::genmeta(bool)': eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ vardb.h: In member function 'bool VarDBase::compression(bool)': vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ --- libplinkseq_la-token.lo --- token.cpp: In member function 'Token TokenFunctions::fn_vec_extract(const Token&, const Token&) const': token.cpp:2483:1: warning: control reaches end of non-void function [-Wreturn-type] 2483 | } | ^ --- libplinkseq_la-vcfz.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-vcfz.lo -MD -MP -MF .deps/libplinkseq_la-vcfz.Tpo -c vcfz.cpp -o libplinkseq_la-vcfz.o >/dev/null 2>&1 --- libplinkseq_la-gstore.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-gstore.lo -MD -MP -MF .deps/libplinkseq_la-gstore.Tpo -c gstore.cpp -o libplinkseq_la-gstore.o >/dev/null 2>&1 --- libplinkseq_la-eval.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-eval.lo -MD -MP -MF .deps/libplinkseq_la-eval.Tpo -c eval.cpp -o libplinkseq_la-eval.o >/dev/null 2>&1 --- libplinkseq_la-token.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-token.lo -MD -MP -MF .deps/libplinkseq_la-token.Tpo -c token.cpp -o libplinkseq_la-token.o >/dev/null 2>&1 --- libplinkseq_la-vcfz.lo --- mv -f .deps/libplinkseq_la-vcfz.Tpo .deps/libplinkseq_la-vcfz.Plo --- libplinkseq_la-globals.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-globals.lo -MD -MP -MF .deps/libplinkseq_la-globals.Tpo -c -o libplinkseq_la-globals.lo `test -f 'globals.cpp' || echo './'`globals.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-globals.lo -MD -MP -MF .deps/libplinkseq_la-globals.Tpo -c globals.cpp -fPIC -DPIC -o .libs/libplinkseq_la-globals.o In file included from meta.h:13, from individual.h:8, from genotype.h:11, from variant.h:14, from gstore.h:6, from globals.cpp:1: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-gstore.lo --- mv -f .deps/libplinkseq_la-gstore.Tpo .deps/libplinkseq_la-gstore.Plo --- libplinkseq_la-variant.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-variant.lo -MD -MP -MF .deps/libplinkseq_la-variant.Tpo -c -o libplinkseq_la-variant.lo `test -f 'variant.cpp' || echo './'`variant.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-variant.lo -MD -MP -MF .deps/libplinkseq_la-variant.Tpo -c variant.cpp -fPIC -DPIC -o .libs/libplinkseq_la-variant.o --- libplinkseq_la-eval.lo --- mv -f .deps/libplinkseq_la-eval.Tpo .deps/libplinkseq_la-eval.Plo --- libplinkseq_la-svar.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-svar.lo -MD -MP -MF .deps/libplinkseq_la-svar.Tpo -c -o libplinkseq_la-svar.lo `test -f 'svar.cpp' || echo './'`svar.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-svar.lo -MD -MP -MF .deps/libplinkseq_la-svar.Tpo -c svar.cpp -fPIC -DPIC -o .libs/libplinkseq_la-svar.o --- libplinkseq_la-variant.lo --- In file included from meta.h:13, from individual.h:8, from genotype.h:11, from variant.h:14, from variant.cpp:3: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-globals.lo --- In file included from mask.h:8, from vardb.h:8, from gstore.h:15: eval.h: In member function 'bool Eval::genmeta(bool)': eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ vardb.h: In member function 'bool VarDBase::compression(bool)': vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ --- libplinkseq_la-svar.lo --- In file included from meta.h:13, from svar.h:5, from svar.cpp:2: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-globals.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-globals.lo -MD -MP -MF .deps/libplinkseq_la-globals.Tpo -c globals.cpp -o libplinkseq_la-globals.o >/dev/null 2>&1 --- libplinkseq_la-variant.lo --- In file included from mask.h:8, from variant.cpp:6: eval.h: In member function 'bool Eval::genmeta(bool)': eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ In file included from gstore.h:15, from variant.cpp:9: vardb.h: In member function 'bool VarDBase::compression(bool)': vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ --- libplinkseq_la-svar.lo --- In file included from mask.h:8, from svar.cpp:4: eval.h: In member function 'bool Eval::genmeta(bool)': eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ In file included from svar.cpp:6: vardb.h: In member function 'bool VarDBase::compression(bool)': vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ --- libplinkseq_la-globals.lo --- mv -f .deps/libplinkseq_la-globals.Tpo .deps/libplinkseq_la-globals.Plo --- libplinkseq_la-genotype.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-genotype.lo -MD -MP -MF .deps/libplinkseq_la-genotype.Tpo -c -o libplinkseq_la-genotype.lo `test -f 'genotype.cpp' || echo './'`genotype.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-genotype.lo -MD -MP -MF .deps/libplinkseq_la-genotype.Tpo -c genotype.cpp -fPIC -DPIC -o .libs/libplinkseq_la-genotype.o --- libplinkseq_la-variant.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-variant.lo -MD -MP -MF .deps/libplinkseq_la-variant.Tpo -c variant.cpp -o libplinkseq_la-variant.o >/dev/null 2>&1 --- libplinkseq_la-token.lo --- mv -f .deps/libplinkseq_la-token.Tpo .deps/libplinkseq_la-token.Plo --- libplinkseq_la-meta.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-meta.lo -MD -MP -MF .deps/libplinkseq_la-meta.Tpo -c -o libplinkseq_la-meta.lo `test -f 'meta.cpp' || echo './'`meta.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-meta.lo -MD -MP -MF .deps/libplinkseq_la-meta.Tpo -c meta.cpp -fPIC -DPIC -o .libs/libplinkseq_la-meta.o --- libplinkseq_la-genotype.lo --- In file included from meta.h:13, from individual.h:8, from genotype.h:11, from genotype.cpp:2: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-meta.lo --- In file included from meta.h:13, from meta.cpp:1: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-svar.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-svar.lo -MD -MP -MF .deps/libplinkseq_la-svar.Tpo -c svar.cpp -o libplinkseq_la-svar.o >/dev/null 2>&1 --- libplinkseq_la-meta.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-meta.lo -MD -MP -MF .deps/libplinkseq_la-meta.Tpo -c meta.cpp -o libplinkseq_la-meta.o >/dev/null 2>&1 --- libplinkseq_la-genotype.lo --- genotype.cpp: In static member function 'static bool Genotype::equivalent(const Genotype&, const Genotype&)': genotype.cpp:290:1: warning: control reaches end of non-void function [-Wreturn-type] 290 | } | ^ meta.h: In member function 'bool MetaInformation::set(const Helper::char_tok&, const std::vector*) [with T = GenMeta]': meta.h:628:5: warning: control reaches end of non-void function [-Wreturn-type] 628 | } | ^ --- libplinkseq_la-meta.lo --- mv -f .deps/libplinkseq_la-meta.Tpo .deps/libplinkseq_la-meta.Plo --- libplinkseq_la-regions.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-regions.lo -MD -MP -MF .deps/libplinkseq_la-regions.Tpo -c -o libplinkseq_la-regions.lo `test -f 'regions.cpp' || echo './'`regions.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-regions.lo -MD -MP -MF .deps/libplinkseq_la-regions.Tpo -c regions.cpp -fPIC -DPIC -o .libs/libplinkseq_la-regions.o --- libplinkseq_la-genotype.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-genotype.lo -MD -MP -MF .deps/libplinkseq_la-genotype.Tpo -c genotype.cpp -o libplinkseq_la-genotype.o >/dev/null 2>&1 --- libplinkseq_la-regions.lo --- In file included from meta.h:13, from regions.h:9, from regions.cpp:1: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-variant.lo --- mv -f .deps/libplinkseq_la-variant.Tpo .deps/libplinkseq_la-variant.Plo --- libplinkseq_la-filemap.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-filemap.lo -MD -MP -MF .deps/libplinkseq_la-filemap.Tpo -c -o libplinkseq_la-filemap.lo `test -f 'filemap.cpp' || echo './'`filemap.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-filemap.lo -MD -MP -MF .deps/libplinkseq_la-filemap.Tpo -c filemap.cpp -fPIC -DPIC -o .libs/libplinkseq_la-filemap.o In file included from filemap.h:30, from filemap.cpp:2: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-regions.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-regions.lo -MD -MP -MF .deps/libplinkseq_la-regions.Tpo -c regions.cpp -o libplinkseq_la-regions.o >/dev/null 2>&1 --- libplinkseq_la-svar.lo --- mv -f .deps/libplinkseq_la-svar.Tpo .deps/libplinkseq_la-svar.Plo --- libplinkseq_la-vcf.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-vcf.lo -MD -MP -MF .deps/libplinkseq_la-vcf.Tpo -c -o libplinkseq_la-vcf.lo `test -f 'vcf.cpp' || echo './'`vcf.cpp --- libplinkseq_la-filemap.lo --- In file included from mask.h:8, from vardb.h:8, from gstore.h:15, from filemap.cpp:7: eval.h: In member function 'bool Eval::genmeta(bool)': eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ --- libplinkseq_la-vcf.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-vcf.lo -MD -MP -MF .deps/libplinkseq_la-vcf.Tpo -c vcf.cpp -fPIC -DPIC -o .libs/libplinkseq_la-vcf.o --- libplinkseq_la-filemap.lo --- vardb.h: In member function 'bool VarDBase::compression(bool)': vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ --- libplinkseq_la-genotype.lo --- mv -f .deps/libplinkseq_la-genotype.Tpo .deps/libplinkseq_la-genotype.Plo --- libplinkseq_la-bcf.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-bcf.lo -MD -MP -MF .deps/libplinkseq_la-bcf.Tpo -c -o libplinkseq_la-bcf.lo `test -f 'bcf.cpp' || echo './'`bcf.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-bcf.lo -MD -MP -MF .deps/libplinkseq_la-bcf.Tpo -c bcf.cpp -fPIC -DPIC -o .libs/libplinkseq_la-bcf.o --- libplinkseq_la-vcf.lo --- In file included from iterrep.h:4, from vardb.h:4, from vcf.h:4, from vcf.cpp:2: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-filemap.lo --- filemap.cpp: In member function 'bool FileMap::append_to_projectfile(const std::string&, const std::string&)': filemap.cpp:577:1: warning: control reaches end of non-void function [-Wreturn-type] 577 | } | ^ filemap.cpp: In member function 'bool FileMap::remove_from_projectfile(const std::string&)': filemap.cpp:608:1: warning: control reaches end of non-void function [-Wreturn-type] 608 | } | ^ --- libplinkseq_la-bcf.lo --- In file included from meta.h:13, from individual.h:8, from genotype.h:11, from variant.h:14, from bcf.cpp:2: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-vcf.lo --- In file included from mask.h:8, from vardb.h:8: eval.h: In member function 'bool Eval::genmeta(bool)': eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ vardb.h: In member function 'bool VarDBase::compression(bool)': vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ --- libplinkseq_la-regions.lo --- mv -f .deps/libplinkseq_la-regions.Tpo .deps/libplinkseq_la-regions.Plo --- libplinkseq_la-zfstream.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-zfstream.lo -MD -MP -MF .deps/libplinkseq_la-zfstream.Tpo -c -o libplinkseq_la-zfstream.lo `test -f 'zfstream.cpp' || echo './'`zfstream.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-zfstream.lo -MD -MP -MF .deps/libplinkseq_la-zfstream.Tpo -c zfstream.cpp -fPIC -DPIC -o .libs/libplinkseq_la-zfstream.o --- libplinkseq_la-filemap.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-filemap.lo -MD -MP -MF .deps/libplinkseq_la-filemap.Tpo -c filemap.cpp -o libplinkseq_la-filemap.o >/dev/null 2>&1 --- libplinkseq_la-bcf.lo --- In file included from mask.h:8, from vardb.h:8, from bcf.cpp:3: eval.h: In member function 'bool Eval::genmeta(bool)': eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ vardb.h: In member function 'bool VarDBase::compression(bool)': vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ bcf.cpp: In member function 'bool BCF::read_record(Variant&, SampleVariant&, SampleVariant&)': bcf.cpp:517:29: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 517 | uint8_t * d = (uint8_t*)len; | ^~~~~~~~~~~~~ bcf.cpp: In member function 'bool BCF::create_header()': bcf.cpp:615:1: warning: no return statement in function returning non-void [-Wreturn-type] 615 | } | ^ --- libplinkseq_la-zfstream.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-zfstream.lo -MD -MP -MF .deps/libplinkseq_la-zfstream.Tpo -c zfstream.cpp -o libplinkseq_la-zfstream.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-zfstream.Tpo .deps/libplinkseq_la-zfstream.Plo --- libplinkseq_la-sqlwrap.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-sqlwrap.lo -MD -MP -MF .deps/libplinkseq_la-sqlwrap.Tpo -c -o libplinkseq_la-sqlwrap.lo `test -f 'sqlwrap.cpp' || echo './'`sqlwrap.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-sqlwrap.lo -MD -MP -MF .deps/libplinkseq_la-sqlwrap.Tpo -c sqlwrap.cpp -fPIC -DPIC -o .libs/libplinkseq_la-sqlwrap.o In file included from sqlwrap.h:9, from sqlwrap.cpp:2: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-sqlwrap.lo -MD -MP -MF .deps/libplinkseq_la-sqlwrap.Tpo -c sqlwrap.cpp -o libplinkseq_la-sqlwrap.o >/dev/null 2>&1 --- libplinkseq_la-vcf.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-vcf.lo -MD -MP -MF .deps/libplinkseq_la-vcf.Tpo -c vcf.cpp -o libplinkseq_la-vcf.o >/dev/null 2>&1 --- libplinkseq_la-sqlwrap.lo --- mv -f .deps/libplinkseq_la-sqlwrap.Tpo .deps/libplinkseq_la-sqlwrap.Plo --- libplinkseq_la-helper.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-helper.lo -MD -MP -MF .deps/libplinkseq_la-helper.Tpo -c -o libplinkseq_la-helper.lo `test -f 'helper.cpp' || echo './'`helper.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-helper.lo -MD -MP -MF .deps/libplinkseq_la-helper.Tpo -c helper.cpp -fPIC -DPIC -o .libs/libplinkseq_la-helper.o --- libplinkseq_la-bcf.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-bcf.lo -MD -MP -MF .deps/libplinkseq_la-bcf.Tpo -c bcf.cpp -o libplinkseq_la-bcf.o >/dev/null 2>&1 --- libplinkseq_la-helper.lo --- In file included from helper.cpp:9: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-filemap.lo --- mv -f .deps/libplinkseq_la-filemap.Tpo .deps/libplinkseq_la-filemap.Plo --- libplinkseq_la-locdb.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-locdb.lo -MD -MP -MF .deps/libplinkseq_la-locdb.Tpo -c -o libplinkseq_la-locdb.lo `test -f 'locdb.cpp' || echo './'`locdb.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-locdb.lo -MD -MP -MF .deps/libplinkseq_la-locdb.Tpo -c locdb.cpp -fPIC -DPIC -o .libs/libplinkseq_la-locdb.o --- libplinkseq_la-helper.lo --- In file included from mask.h:8, from vardb.h:8, from gstore.h:15, from helper.cpp:12: eval.h: In member function 'bool Eval::genmeta(bool)': eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ vardb.h: In member function 'bool VarDBase::compression(bool)': vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ helper.cpp: In function 'bool Helper::str2uint64_t(const char*, uint64_t&)': helper.cpp:251:1: warning: no return statement in function returning non-void [-Wreturn-type] 251 | } | ^ --- libplinkseq_la-locdb.lo --- In file included from sqlwrap.h:9, from locdb.h:4, from locdb.cpp:1: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-helper.lo --- helper.cpp: In function 'std::vector > Helper::parse(const std::string&, const std::string&, bool)': helper.cpp:835:15: warning: control reaches end of non-void function [-Wreturn-type] 835 | Helper::halt("silly internal error in parse/char_split"); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ helper.cpp: In function 'std::vector > Helper::quoted_parse(const std::string&, const std::string&, bool)': helper.cpp:843:15: warning: control reaches end of non-void function [-Wreturn-type] 843 | Helper::halt("silly internal error in parse/char_split"); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ --- libplinkseq_la-vcf.lo --- mv -f .deps/libplinkseq_la-vcf.Tpo .deps/libplinkseq_la-vcf.Plo --- libplinkseq_la-vardb.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-vardb.lo -MD -MP -MF .deps/libplinkseq_la-vardb.Tpo -c -o libplinkseq_la-vardb.lo `test -f 'vardb.cpp' || echo './'`vardb.cpp --- libplinkseq_la-locdb.lo --- locdb.cpp: In member function 'bool LocDBase::dettach()': locdb.cpp:249:1: warning: no return statement in function returning non-void [-Wreturn-type] 249 | } | ^ locdb.cpp: In member function 'bool LocDBase::init()': locdb.cpp:490:1: warning: no return statement in function returning non-void [-Wreturn-type] 490 | } | ^ locdb.cpp: In member function 'bool LocDBase::release()': locdb.cpp:563:1: warning: no return statement in function returning non-void [-Wreturn-type] 563 | } | ^ locdb.cpp: In member function 'bool LocDBase::clear_overlaps(uint64_t)': locdb.cpp:686:1: warning: no return statement in function returning non-void [-Wreturn-type] 686 | } | ^ locdb.cpp: In member function 'bool LocDBase::clear_overlaps(uint64_t, uint64_t)': locdb.cpp:698:1: warning: no return statement in function returning non-void [-Wreturn-type] 698 | } | ^ locdb.cpp: In member function 'uint64_t LocDBase::merge(uint64_t, uint64_t, const std::string&)': locdb.cpp:2511:1: warning: no return statement in function returning non-void [-Wreturn-type] 2511 | } | ^ locdb.cpp: In member function 'uint64_t LocDBase::rename(uint64_t, uint64_t, const std::string&)': locdb.cpp:2546:1: warning: no return statement in function returning non-void [-Wreturn-type] 2546 | } | ^ --- libplinkseq_la-vardb.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-vardb.lo -MD -MP -MF .deps/libplinkseq_la-vardb.Tpo -c vardb.cpp -fPIC -DPIC -o .libs/libplinkseq_la-vardb.o --- libplinkseq_la-helper.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-helper.lo -MD -MP -MF .deps/libplinkseq_la-helper.Tpo -c helper.cpp -o libplinkseq_la-helper.o >/dev/null 2>&1 --- libplinkseq_la-vardb.lo --- In file included from iterrep.h:4, from vardb.h:4, from vardb.cpp:2: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-bcf.lo --- mv -f .deps/libplinkseq_la-bcf.Tpo .deps/libplinkseq_la-bcf.Plo --- libplinkseq_la-segments.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-segments.lo -MD -MP -MF .deps/libplinkseq_la-segments.Tpo -c -o libplinkseq_la-segments.lo `test -f 'segments.cpp' || echo './'`segments.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-segments.lo -MD -MP -MF .deps/libplinkseq_la-segments.Tpo -c segments.cpp -fPIC -DPIC -o .libs/libplinkseq_la-segments.o --- libplinkseq_la-vardb.lo --- In file included from mask.h:8, from vardb.h:8: eval.h: In member function 'bool Eval::genmeta(bool)': eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ vardb.h: In member function 'bool VarDBase::compression(bool)': vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ vardb.cpp: In member function 'bool VarDBase::index()': vardb.cpp:800:1: warning: no return statement in function returning non-void [-Wreturn-type] 800 | } | ^ vardb.cpp: In member function 'bool VarDBase::drop_index()': vardb.cpp:814:1: warning: no return statement in function returning non-void [-Wreturn-type] 814 | } | ^ --- libplinkseq_la-segments.lo --- In file included from meta.h:13, from individual.h:8, from genotype.h:11, from variant.h:14, from gstore.h:6, from segments.h:5, from segments.cpp:2: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ In file included from mask.h:8, from vardb.h:8, from gstore.h:15: eval.h: In member function 'bool Eval::genmeta(bool)': eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ vardb.h: In member function 'bool VarDBase::compression(bool)': vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ --- libplinkseq_la-locdb.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-locdb.lo -MD -MP -MF .deps/libplinkseq_la-locdb.Tpo -c locdb.cpp -o libplinkseq_la-locdb.o >/dev/null 2>&1 --- libplinkseq_la-helper.lo --- mv -f .deps/libplinkseq_la-helper.Tpo .deps/libplinkseq_la-helper.Plo --- libplinkseq_la-varfunc.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-varfunc.lo -MD -MP -MF .deps/libplinkseq_la-varfunc.Tpo -c -o libplinkseq_la-varfunc.lo `test -f 'varfunc.cpp' || echo './'`varfunc.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-varfunc.lo -MD -MP -MF .deps/libplinkseq_la-varfunc.Tpo -c varfunc.cpp -fPIC -DPIC -o .libs/libplinkseq_la-varfunc.o --- libplinkseq_la-vardb.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-vardb.lo -MD -MP -MF .deps/libplinkseq_la-vardb.Tpo -c vardb.cpp -o libplinkseq_la-vardb.o >/dev/null 2>&1 --- libplinkseq_la-varfunc.lo --- In file included from meta.h:13, from individual.h:8, from genotype.h:11, from variant.h:14, from gstore.h:6, from varfunc.cpp:1: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-segments.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-segments.lo -MD -MP -MF .deps/libplinkseq_la-segments.Tpo -c segments.cpp -o libplinkseq_la-segments.o >/dev/null 2>&1 --- libplinkseq_la-varfunc.lo --- In file included from mask.h:8, from vardb.h:8, from gstore.h:15: eval.h: In member function 'bool Eval::genmeta(bool)': eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ vardb.h: In member function 'bool VarDBase::compression(bool)': vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-varfunc.lo -MD -MP -MF .deps/libplinkseq_la-varfunc.Tpo -c varfunc.cpp -o libplinkseq_la-varfunc.o >/dev/null 2>&1 --- libplinkseq_la-segments.lo --- mv -f .deps/libplinkseq_la-segments.Tpo .deps/libplinkseq_la-segments.Plo --- libplinkseq_la-variant.pb.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-variant.pb.lo -MD -MP -MF .deps/libplinkseq_la-variant.pb.Tpo -c -o libplinkseq_la-variant.pb.lo `test -f 'variant.pb.cpp' || echo './'`variant.pb.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-variant.pb.lo -MD -MP -MF .deps/libplinkseq_la-variant.pb.Tpo -c variant.pb.cpp -fPIC -DPIC -o .libs/libplinkseq_la-variant.pb.o --- libplinkseq_la-locdb.lo --- mv -f .deps/libplinkseq_la-locdb.Tpo .deps/libplinkseq_la-locdb.Plo --- libplinkseq_la-refdb.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-refdb.lo -MD -MP -MF .deps/libplinkseq_la-refdb.Tpo -c -o libplinkseq_la-refdb.lo `test -f 'refdb.cpp' || echo './'`refdb.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-refdb.lo -MD -MP -MF .deps/libplinkseq_la-refdb.Tpo -c refdb.cpp -fPIC -DPIC -o .libs/libplinkseq_la-refdb.o --- libplinkseq_la-vardb.lo --- mv -f .deps/libplinkseq_la-vardb.Tpo .deps/libplinkseq_la-vardb.Plo --- libplinkseq_la-seqdb.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-seqdb.lo -MD -MP -MF .deps/libplinkseq_la-seqdb.Tpo -c -o libplinkseq_la-seqdb.lo `test -f 'seqdb.cpp' || echo './'`seqdb.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-seqdb.lo -MD -MP -MF .deps/libplinkseq_la-seqdb.Tpo -c seqdb.cpp -fPIC -DPIC -o .libs/libplinkseq_la-seqdb.o --- libplinkseq_la-refdb.lo --- In file included from sqlwrap.h:9, from refdb.h:7, from refdb.cpp:2: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-varfunc.lo --- mv -f .deps/libplinkseq_la-varfunc.Tpo .deps/libplinkseq_la-varfunc.Plo --- libplinkseq_la-annot.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-annot.lo -MD -MP -MF .deps/libplinkseq_la-annot.Tpo -c -o libplinkseq_la-annot.lo `test -f 'annot.cpp' || echo './'`annot.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-annot.lo -MD -MP -MF .deps/libplinkseq_la-annot.Tpo -c annot.cpp -fPIC -DPIC -o .libs/libplinkseq_la-annot.o --- libplinkseq_la-seqdb.lo --- In file included from sqlwrap.h:9, from seqdb.h:7, from seqdb.cpp:2: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-annot.lo --- In file included from meta.h:13, from regions.h:9, from annot.h:7, from annot.cpp:2: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-refdb.lo --- In file included from mask.h:8, from vardb.h:8, from gstore.h:15, from refdb.cpp:4: eval.h: In member function 'bool Eval::genmeta(bool)': eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ vardb.h: In member function 'bool VarDBase::compression(bool)': vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ refdb.cpp: In member function 'bool RefDBase::init()': refdb.cpp:201:1: warning: no return statement in function returning non-void [-Wreturn-type] 201 | } | ^ refdb.cpp: In member function 'bool RefDBase::release()': refdb.cpp:233:1: warning: no return statement in function returning non-void [-Wreturn-type] 233 | } | ^ refdb.cpp: In member function 'bool RefDBase::insert(int, const Variant&)': refdb.cpp:393:1: warning: no return statement in function returning non-void [-Wreturn-type] 393 | } | ^ refdb.cpp: In member function 'bool RefDBase::refInsertion(const RefVariant&)': refdb.cpp:420:1: warning: no return statement in function returning non-void [-Wreturn-type] 420 | } | ^ --- libplinkseq_la-seqdb.lo --- In file included from mask.h:8, from vardb.h:8, from gstore.h:15, from seqdb.cpp:4: eval.h: In member function 'bool Eval::genmeta(bool)': eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ vardb.h: In member function 'bool VarDBase::compression(bool)': vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ seqdb.cpp: In member function 'bool SeqDBase::init()': seqdb.cpp:119:1: warning: no return statement in function returning non-void [-Wreturn-type] 119 | } | ^ seqdb.cpp: In member function 'bool SeqDBase::release()': seqdb.cpp:174:1: warning: no return statement in function returning non-void [-Wreturn-type] 174 | } | ^ seqdb.cpp: In member function 'bool SeqDBase::dettach()': seqdb.cpp:183:1: warning: no return statement in function returning non-void [-Wreturn-type] 183 | } | ^ --- libplinkseq_la-refdb.lo --- refdb.cpp: In member function 'bool RefDBase::attach(std::string)': refdb.cpp:65:8: warning: control reaches end of non-void function [-Wreturn-type] 65 | index(); | ~~~~~^~ --- libplinkseq_la-annot.lo --- In file included from mask.h:8, from vardb.h:8, from gstore.h:15, from annot.cpp:4: eval.h: In member function 'bool Eval::genmeta(bool)': eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ vardb.h: In member function 'bool VarDBase::compression(bool)': vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ --- libplinkseq_la-seqdb.lo --- seqdb.cpp: In member function 'bool SeqDBase::attach(const std::string&)': seqdb.cpp:90:14: warning: control reaches end of non-void function [-Wreturn-type] 90 | lookup_meta(); | ~~~~~~~~~~~^~ --- libplinkseq_la-variant.pb.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-variant.pb.lo -MD -MP -MF .deps/libplinkseq_la-variant.pb.Tpo -c variant.pb.cpp -o libplinkseq_la-variant.pb.o >/dev/null 2>&1 --- libplinkseq_la-seqdb.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-seqdb.lo -MD -MP -MF .deps/libplinkseq_la-seqdb.Tpo -c seqdb.cpp -o libplinkseq_la-seqdb.o >/dev/null 2>&1 --- libplinkseq_la-refdb.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-refdb.lo -MD -MP -MF .deps/libplinkseq_la-refdb.Tpo -c refdb.cpp -o libplinkseq_la-refdb.o >/dev/null 2>&1 --- libplinkseq_la-annot.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-annot.lo -MD -MP -MF .deps/libplinkseq_la-annot.Tpo -c annot.cpp -o libplinkseq_la-annot.o >/dev/null 2>&1 --- libplinkseq_la-variant.pb.lo --- mv -f .deps/libplinkseq_la-variant.pb.Tpo .deps/libplinkseq_la-variant.pb.Plo --- libplinkseq_la-inddb.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-inddb.lo -MD -MP -MF .deps/libplinkseq_la-inddb.Tpo -c -o libplinkseq_la-inddb.lo `test -f 'inddb.cpp' || echo './'`inddb.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-inddb.lo -MD -MP -MF .deps/libplinkseq_la-inddb.Tpo -c inddb.cpp -fPIC -DPIC -o .libs/libplinkseq_la-inddb.o --- libplinkseq_la-seqdb.lo --- mv -f .deps/libplinkseq_la-seqdb.Tpo .deps/libplinkseq_la-seqdb.Plo --- libplinkseq_la-mask.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-mask.lo -MD -MP -MF .deps/libplinkseq_la-mask.Tpo -c -o libplinkseq_la-mask.lo `test -f 'mask.cpp' || echo './'`mask.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-mask.lo -MD -MP -MF .deps/libplinkseq_la-mask.Tpo -c mask.cpp -fPIC -DPIC -o .libs/libplinkseq_la-mask.o --- libplinkseq_la-inddb.lo --- In file included from sqlwrap.h:9, from inddb.h:4, from inddb.cpp:2: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-mask.lo --- In file included from meta.h:13, from regions.h:9, from mask.h:6, from mask.cpp:2: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-inddb.lo --- In file included from mask.h:8, from vardb.h:8, from gstore.h:15, from inddb.cpp:4: eval.h: In member function 'bool Eval::genmeta(bool)': eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ vardb.h: In member function 'bool VarDBase::compression(bool)': vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ inddb.cpp: In member function 'bool IndDBase::index()': inddb.cpp:239:1: warning: no return statement in function returning non-void [-Wreturn-type] 239 | } | ^ inddb.cpp: In member function 'bool IndDBase::drop_index()': inddb.cpp:246:1: warning: no return statement in function returning non-void [-Wreturn-type] 246 | } | ^ --- libplinkseq_la-mask.lo --- In file included from mask.h:8: eval.h: In member function 'bool Eval::genmeta(bool)': eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ In file included from mask.cpp:7: vardb.h: In member function 'bool VarDBase::compression(bool)': vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ mask.cpp: In constructor 'Mask::Mask(const std::string&, const std::string&, bool, bool)': mask.cpp:921:34: warning: ignoring return value of 'bool std::operator==(const __cxx11::basic_string<_CharT, _Traits, _Allocator>&, const _CharT*) [with _CharT = char; _Traits = char_traits; _Alloc = allocator]', declared with attribute 'nodiscard' [-Wunused-result] 921 | t[i+1] == "not"; In file included from /opt/tools/gcc14/include/c++/14.3.0/string:54, from regions.h:4: /opt/tools/gcc14/include/c++/14.3.0/bits/basic_string.h:3772:5: note: declared here 3772 | operator==(const basic_string<_CharT, _Traits, _Alloc>& __lhs, | ^~~~~~~~ mask.cpp: In member function 'int Mask::meta_equals(const std::string&, int)': mask.cpp:2762:1: warning: no return statement in function returning non-void [-Wreturn-type] 2762 | } | ^ mask.cpp: In member function 'int Mask::meta_not_equals(const std::string&, int)': mask.cpp:2767:1: warning: no return statement in function returning non-void [-Wreturn-type] 2767 | } | ^ mask.cpp: In member function 'int Mask::meta_equals(const std::string&, const std::string&)': mask.cpp:2772:1: warning: no return statement in function returning non-void [-Wreturn-type] 2772 | } | ^ mask.cpp: In member function 'int Mask::meta_not_equals(const std::string&, const std::string&)': mask.cpp:2777:1: warning: no return statement in function returning non-void [-Wreturn-type] 2777 | } | ^ mask.cpp: In member function 'int Mask::meta_greater(const std::string&, double)': mask.cpp:2782:1: warning: no return statement in function returning non-void [-Wreturn-type] 2782 | } | ^ mask.cpp: In member function 'int Mask::meta_greater_equal(const std::string&, double)': mask.cpp:2787:1: warning: no return statement in function returning non-void [-Wreturn-type] 2787 | } | ^ mask.cpp: In member function 'int Mask::meta_less(const std::string&, double)': mask.cpp:2792:1: warning: no return statement in function returning non-void [-Wreturn-type] 2792 | } | ^ mask.cpp: In member function 'int Mask::meta_less_equal(const std::string&, double)': mask.cpp:2797:1: warning: no return statement in function returning non-void [-Wreturn-type] 2797 | } | ^ mask.cpp: In member function 'int Mask::req_meta_equals(const std::string&, int)': mask.cpp:2804:1: warning: no return statement in function returning non-void [-Wreturn-type] 2804 | } | ^ mask.cpp: In member function 'int Mask::req_meta_not_equals(const std::string&, int)': mask.cpp:2809:1: warning: no return statement in function returning non-void [-Wreturn-type] 2809 | } | ^ mask.cpp: In member function 'int Mask::req_meta_equals(const std::string&, const std::string&)': mask.cpp:2814:1: warning: no return statement in function returning non-void [-Wreturn-type] 2814 | } | ^ mask.cpp: In member function 'int Mask::req_meta_not_equals(const std::string&, const std::string&)': mask.cpp:2819:1: warning: no return statement in function returning non-void [-Wreturn-type] 2819 | } | ^ mask.cpp: In member function 'int Mask::req_meta_greater(const std::string&, double)': mask.cpp:2824:1: warning: no return statement in function returning non-void [-Wreturn-type] 2824 | } | ^ mask.cpp: In member function 'int Mask::req_meta_greater_equal(const std::string&, double)': mask.cpp:2829:1: warning: no return statement in function returning non-void [-Wreturn-type] 2829 | } | ^ mask.cpp: In member function 'int Mask::req_meta_less(const std::string&, double)': mask.cpp:2834:1: warning: no return statement in function returning non-void [-Wreturn-type] 2834 | } | ^ mask.cpp: In member function 'int Mask::req_meta_less_equal(const std::string&, double)': mask.cpp:2839:1: warning: no return statement in function returning non-void [-Wreturn-type] 2839 | } | ^ mask.cpp: In member function 'int Mask::geno_equals(const std::string&, int)': mask.cpp:3235:1: warning: no return statement in function returning non-void [-Wreturn-type] 3235 | } | ^ mask.cpp: In member function 'int Mask::geno_not_equals(const std::string&, int)': mask.cpp:3240:1: warning: no return statement in function returning non-void [-Wreturn-type] 3240 | } | ^ mask.cpp: In member function 'int Mask::geno_equals(const std::string&, const std::string&)': mask.cpp:3245:1: warning: no return statement in function returning non-void [-Wreturn-type] 3245 | } | ^ mask.cpp: In member function 'int Mask::geno_not_equals(const std::string&, const std::string&)': mask.cpp:3250:1: warning: no return statement in function returning non-void [-Wreturn-type] 3250 | } | ^ mask.cpp: In member function 'int Mask::geno_greater(const std::string&, double)': mask.cpp:3255:1: warning: no return statement in function returning non-void [-Wreturn-type] 3255 | } | ^ mask.cpp: In member function 'int Mask::geno_greater_equal(const std::string&, double)': mask.cpp:3260:1: warning: no return statement in function returning non-void [-Wreturn-type] 3260 | } | ^ mask.cpp: In member function 'int Mask::geno_less(const std::string&, double)': mask.cpp:3265:1: warning: no return statement in function returning non-void [-Wreturn-type] 3265 | } | ^ mask.cpp: In member function 'int Mask::geno_less_equal(const std::string&, double)': mask.cpp:3270:1: warning: no return statement in function returning non-void [-Wreturn-type] 3270 | } | ^ mask.cpp: In member function 'int Mask::req_geno_equals(const std::string&, int)': mask.cpp:3277:1: warning: no return statement in function returning non-void [-Wreturn-type] 3277 | } | ^ mask.cpp: In member function 'int Mask::req_geno_not_equals(const std::string&, int)': mask.cpp:3282:1: warning: no return statement in function returning non-void [-Wreturn-type] 3282 | } | ^ mask.cpp: In member function 'int Mask::req_geno_equals(const std::string&, const std::string&)': mask.cpp:3287:1: warning: no return statement in function returning non-void [-Wreturn-type] 3287 | } | ^ mask.cpp: In member function 'int Mask::req_geno_not_equals(const std::string&, const std::string&)': mask.cpp:3292:1: warning: no return statement in function returning non-void [-Wreturn-type] 3292 | } | ^ mask.cpp: In member function 'int Mask::req_geno_greater(const std::string&, double)': mask.cpp:3297:1: warning: no return statement in function returning non-void [-Wreturn-type] 3297 | } | ^ mask.cpp: In member function 'int Mask::req_geno_greater_equal(const std::string&, double)': mask.cpp:3302:1: warning: no return statement in function returning non-void [-Wreturn-type] 3302 | } | ^ mask.cpp: In member function 'int Mask::req_geno_less(const std::string&, double)': mask.cpp:3307:1: warning: no return statement in function returning non-void [-Wreturn-type] 3307 | } | ^ mask.cpp: In member function 'int Mask::req_geno_less_equal(const std::string&, double)': mask.cpp:3312:1: warning: no return statement in function returning non-void [-Wreturn-type] 3312 | } | ^ --- libplinkseq_la-refdb.lo --- mv -f .deps/libplinkseq_la-refdb.Tpo .deps/libplinkseq_la-refdb.Plo --- libplinkseq_la-reffuncs.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-reffuncs.lo -MD -MP -MF .deps/libplinkseq_la-reffuncs.Tpo -c -o libplinkseq_la-reffuncs.lo `test -f 'reffuncs.cpp' || echo './'`reffuncs.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-reffuncs.lo -MD -MP -MF .deps/libplinkseq_la-reffuncs.Tpo -c reffuncs.cpp -fPIC -DPIC -o .libs/libplinkseq_la-reffuncs.o --- libplinkseq_la-annot.lo --- mv -f .deps/libplinkseq_la-annot.Tpo .deps/libplinkseq_la-annot.Plo --- libplinkseq_la-vgroup.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-vgroup.lo -MD -MP -MF .deps/libplinkseq_la-vgroup.Tpo -c -o libplinkseq_la-vgroup.lo `test -f 'vgroup.cpp' || echo './'`vgroup.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-vgroup.lo -MD -MP -MF .deps/libplinkseq_la-vgroup.Tpo -c vgroup.cpp -fPIC -DPIC -o .libs/libplinkseq_la-vgroup.o --- libplinkseq_la-reffuncs.lo --- In file included from meta.h:13, from individual.h:8, from genotype.h:11, from variant.h:14, from gstore.h:6, from reffuncs.cpp:2: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-inddb.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-inddb.lo -MD -MP -MF .deps/libplinkseq_la-inddb.Tpo -c inddb.cpp -o libplinkseq_la-inddb.o >/dev/null 2>&1 --- libplinkseq_la-vgroup.lo --- In file included from meta.h:13, from individual.h:8, from genotype.h:11, from variant.h:14, from vgroup.h:4, from vgroup.cpp:1: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-reffuncs.lo --- In file included from mask.h:8, from vardb.h:8, from gstore.h:15: eval.h: In member function 'bool Eval::genmeta(bool)': eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ vardb.h: In member function 'bool VarDBase::compression(bool)': vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ --- libplinkseq_la-vgroup.lo --- In file included from mask.h:8, from vgroup.h:6: eval.h: In member function 'bool Eval::genmeta(bool)': eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ In file included from gstore.h:15, from vgroup.cpp:2: vardb.h: In member function 'bool VarDBase::compression(bool)': vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ --- libplinkseq_la-reffuncs.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-reffuncs.lo -MD -MP -MF .deps/libplinkseq_la-reffuncs.Tpo -c reffuncs.cpp -o libplinkseq_la-reffuncs.o >/dev/null 2>&1 --- libplinkseq_la-vgroup.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-vgroup.lo -MD -MP -MF .deps/libplinkseq_la-vgroup.Tpo -c vgroup.cpp -o libplinkseq_la-vgroup.o >/dev/null 2>&1 --- libplinkseq_la-inddb.lo --- mv -f .deps/libplinkseq_la-inddb.Tpo .deps/libplinkseq_la-inddb.Plo --- libplinkseq_la-allele.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-allele.lo -MD -MP -MF .deps/libplinkseq_la-allele.Tpo -c -o libplinkseq_la-allele.lo `test -f 'allele.cpp' || echo './'`allele.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-allele.lo -MD -MP -MF .deps/libplinkseq_la-allele.Tpo -c allele.cpp -fPIC -DPIC -o .libs/libplinkseq_la-allele.o --- libplinkseq_la-reffuncs.lo --- mv -f .deps/libplinkseq_la-reffuncs.Tpo .deps/libplinkseq_la-reffuncs.Plo --- libplinkseq_la-individual.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-individual.lo -MD -MP -MF .deps/libplinkseq_la-individual.Tpo -c -o libplinkseq_la-individual.lo `test -f 'individual.cpp' || echo './'`individual.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-individual.lo -MD -MP -MF .deps/libplinkseq_la-individual.Tpo -c individual.cpp -fPIC -DPIC -o .libs/libplinkseq_la-individual.o --- libplinkseq_la-allele.lo --- In file included from meta.h:13, from allele.h:6, from allele.cpp:1: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-allele.lo -MD -MP -MF .deps/libplinkseq_la-allele.Tpo -c allele.cpp -o libplinkseq_la-allele.o >/dev/null 2>&1 --- libplinkseq_la-individual.lo --- In file included from meta.h:13, from individual.h:8, from individual.cpp:1: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-mask.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-mask.lo -MD -MP -MF .deps/libplinkseq_la-mask.Tpo -c mask.cpp -o libplinkseq_la-mask.o >/dev/null 2>&1 --- libplinkseq_la-individual.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-individual.lo -MD -MP -MF .deps/libplinkseq_la-individual.Tpo -c individual.cpp -o libplinkseq_la-individual.o >/dev/null 2>&1 --- libplinkseq_la-allele.lo --- mv -f .deps/libplinkseq_la-allele.Tpo .deps/libplinkseq_la-allele.Plo --- libplinkseq_la-indmap.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-indmap.lo -MD -MP -MF .deps/libplinkseq_la-indmap.Tpo -c -o libplinkseq_la-indmap.lo `test -f 'indmap.cpp' || echo './'`indmap.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-indmap.lo -MD -MP -MF .deps/libplinkseq_la-indmap.Tpo -c indmap.cpp -fPIC -DPIC -o .libs/libplinkseq_la-indmap.o --- libplinkseq_la-individual.lo --- mv -f .deps/libplinkseq_la-individual.Tpo .deps/libplinkseq_la-individual.Plo --- libplinkseq_la-phmap.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-phmap.lo -MD -MP -MF .deps/libplinkseq_la-phmap.Tpo -c -o libplinkseq_la-phmap.lo `test -f 'phmap.cpp' || echo './'`phmap.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-phmap.lo -MD -MP -MF .deps/libplinkseq_la-phmap.Tpo -c phmap.cpp -fPIC -DPIC -o .libs/libplinkseq_la-phmap.o --- libplinkseq_la-indmap.lo --- In file included from meta.h:13, from indmap.h:9, from indmap.cpp:2: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-phmap.lo --- In file included from meta.h:13, from individual.h:8, from phmap.h:9, from phmap.cpp:2: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-indmap.lo --- In file included from mask.h:8, from vardb.h:8, from indmap.cpp:4: eval.h: In member function 'bool Eval::genmeta(bool)': eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ vardb.h: In member function 'bool VarDBase::compression(bool)': vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ --- libplinkseq_la-phmap.lo --- In file included from mask.h:8, from vardb.h:8, from gstore.h:15, from phmap.cpp:6: eval.h: In member function 'bool Eval::genmeta(bool)': eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ vardb.h: In member function 'bool VarDBase::compression(bool)': vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ --- libplinkseq_la-vgroup.lo --- mv -f .deps/libplinkseq_la-vgroup.Tpo .deps/libplinkseq_la-vgroup.Plo --- libplinkseq_la-permute.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-permute.lo -MD -MP -MF .deps/libplinkseq_la-permute.Tpo -c -o libplinkseq_la-permute.lo `test -f 'permute.cpp' || echo './'`permute.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-permute.lo -MD -MP -MF .deps/libplinkseq_la-permute.Tpo -c permute.cpp -fPIC -DPIC -o .libs/libplinkseq_la-permute.o In file included from matrix.h:5, from statistics.h:4, from permute.h:5, from permute.cpp:1: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-indmap.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-indmap.lo -MD -MP -MF .deps/libplinkseq_la-indmap.Tpo -c indmap.cpp -o libplinkseq_la-indmap.o >/dev/null 2>&1 --- libplinkseq_la-permute.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-permute.lo -MD -MP -MF .deps/libplinkseq_la-permute.Tpo -c permute.cpp -o libplinkseq_la-permute.o >/dev/null 2>&1 --- libplinkseq_la-phmap.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-phmap.lo -MD -MP -MF .deps/libplinkseq_la-phmap.Tpo -c phmap.cpp -o libplinkseq_la-phmap.o >/dev/null 2>&1 --- libplinkseq_la-permute.lo --- mv -f .deps/libplinkseq_la-permute.Tpo .deps/libplinkseq_la-permute.Plo --- libplinkseq_la-crandom.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-crandom.lo -MD -MP -MF .deps/libplinkseq_la-crandom.Tpo -c -o libplinkseq_la-crandom.lo `test -f 'crandom.cpp' || echo './'`crandom.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-crandom.lo -MD -MP -MF .deps/libplinkseq_la-crandom.Tpo -c crandom.cpp -fPIC -DPIC -o .libs/libplinkseq_la-crandom.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-crandom.lo -MD -MP -MF .deps/libplinkseq_la-crandom.Tpo -c crandom.cpp -o libplinkseq_la-crandom.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-crandom.Tpo .deps/libplinkseq_la-crandom.Plo --- libplinkseq_la-defs.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-defs.lo -MD -MP -MF .deps/libplinkseq_la-defs.Tpo -c -o libplinkseq_la-defs.lo `test -f 'defs.cpp' || echo './'`defs.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-defs.lo -MD -MP -MF .deps/libplinkseq_la-defs.Tpo -c defs.cpp -fPIC -DPIC -o .libs/libplinkseq_la-defs.o In file included from meta.h:13, from defs.cpp:3: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-defs.lo -MD -MP -MF .deps/libplinkseq_la-defs.Tpo -c defs.cpp -o libplinkseq_la-defs.o >/dev/null 2>&1 --- libplinkseq_la-mask.lo --- mv -f .deps/libplinkseq_la-mask.Tpo .deps/libplinkseq_la-mask.Plo --- libplinkseq_la-em.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-em.lo -MD -MP -MF .deps/libplinkseq_la-em.Tpo -c -o libplinkseq_la-em.lo `test -f 'em.cpp' || echo './'`em.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-em.lo -MD -MP -MF .deps/libplinkseq_la-em.Tpo -c em.cpp -fPIC -DPIC -o .libs/libplinkseq_la-em.o --- libplinkseq_la-indmap.lo --- mv -f .deps/libplinkseq_la-indmap.Tpo .deps/libplinkseq_la-indmap.Plo --- libplinkseq_la-bed.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-bed.lo -MD -MP -MF .deps/libplinkseq_la-bed.Tpo -c -o libplinkseq_la-bed.lo `test -f 'bed.cpp' || echo './'`bed.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-bed.lo -MD -MP -MF .deps/libplinkseq_la-bed.Tpo -c bed.cpp -fPIC -DPIC -o .libs/libplinkseq_la-bed.o --- libplinkseq_la-defs.lo --- mv -f .deps/libplinkseq_la-defs.Tpo .deps/libplinkseq_la-defs.Plo --- libplinkseq_la-varmeta.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-varmeta.lo -MD -MP -MF .deps/libplinkseq_la-varmeta.Tpo -c -o libplinkseq_la-varmeta.lo `test -f 'varmeta.cpp' || echo './'`varmeta.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-varmeta.lo -MD -MP -MF .deps/libplinkseq_la-varmeta.Tpo -c varmeta.cpp -fPIC -DPIC -o .libs/libplinkseq_la-varmeta.o --- libplinkseq_la-em.lo --- In file included from meta.h:13, from em.h:5, from em.cpp:2: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-bed.lo --- In file included from bed.cpp:3: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-phmap.lo --- mv -f .deps/libplinkseq_la-phmap.Tpo .deps/libplinkseq_la-phmap.Plo --- libplinkseq_la-pp.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-pp.lo -MD -MP -MF .deps/libplinkseq_la-pp.Tpo -c -o libplinkseq_la-pp.lo `test -f 'pp.cpp' || echo './'`pp.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-pp.lo -MD -MP -MF .deps/libplinkseq_la-pp.Tpo -c pp.cpp -fPIC -DPIC -o .libs/libplinkseq_la-pp.o --- libplinkseq_la-varmeta.lo --- In file included from iterrep.h:4, from vardb.h:4, from varmeta.cpp:1: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-pp.lo --- In file included from sqlwrap.h:9, from pp.h:10, from pp.cpp:1: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-em.lo --- em.cpp: In member function 'int EM::estimate()': em.cpp:185:1: warning: no return statement in function returning non-void [-Wreturn-type] 185 | } | ^ --- libplinkseq_la-bed.lo --- In file included from mask.h:8, from vardb.h:8, from bed.cpp:4: eval.h: In member function 'bool Eval::genmeta(bool)': eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ vardb.h: In member function 'bool VarDBase::compression(bool)': vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ --- libplinkseq_la-varmeta.lo --- In file included from mask.h:8, from vardb.h:8: eval.h: In member function 'bool Eval::genmeta(bool)': eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ vardb.h: In member function 'bool VarDBase::compression(bool)': vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ varmeta.cpp: In member function 'int VarDBase::loader_indep_meta(const std::string&, int, const std::string&)': varmeta.cpp:183:1: warning: no return statement in function returning non-void [-Wreturn-type] 183 | } | ^ --- libplinkseq_la-pp.lo --- In file included from mask.h:8, from vardb.h:8, from gstore.h:15, from pp.cpp:8: eval.h: In member function 'bool Eval::genmeta(bool)': eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ --- libplinkseq_la-em.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-em.lo -MD -MP -MF .deps/libplinkseq_la-em.Tpo -c em.cpp -o libplinkseq_la-em.o >/dev/null 2>&1 --- libplinkseq_la-pp.lo --- vardb.h: In member function 'bool VarDBase::compression(bool)': vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ --- libplinkseq_la-bed.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-bed.lo -MD -MP -MF .deps/libplinkseq_la-bed.Tpo -c bed.cpp -o libplinkseq_la-bed.o >/dev/null 2>&1 --- libplinkseq_la-varmeta.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-varmeta.lo -MD -MP -MF .deps/libplinkseq_la-varmeta.Tpo -c varmeta.cpp -o libplinkseq_la-varmeta.o >/dev/null 2>&1 --- libplinkseq_la-pp.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-pp.lo -MD -MP -MF .deps/libplinkseq_la-pp.Tpo -c pp.cpp -o libplinkseq_la-pp.o >/dev/null 2>&1 --- libplinkseq_la-em.lo --- mv -f .deps/libplinkseq_la-em.Tpo .deps/libplinkseq_la-em.Plo --- libplinkseq_la-pp.pb.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-pp.pb.lo -MD -MP -MF .deps/libplinkseq_la-pp.pb.Tpo -c -o libplinkseq_la-pp.pb.lo `test -f 'pp.pb.cpp' || echo './'`pp.pb.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-pp.pb.lo -MD -MP -MF .deps/libplinkseq_la-pp.pb.Tpo -c pp.pb.cpp -fPIC -DPIC -o .libs/libplinkseq_la-pp.pb.o --- libplinkseq_la-bed.lo --- mv -f .deps/libplinkseq_la-bed.Tpo .deps/libplinkseq_la-bed.Plo --- libplinkseq_la-statistics.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-statistics.lo -MD -MP -MF .deps/libplinkseq_la-statistics.Tpo -c -o libplinkseq_la-statistics.lo `test -f 'statistics.cpp' || echo './'`statistics.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-statistics.lo -MD -MP -MF .deps/libplinkseq_la-statistics.Tpo -c statistics.cpp -fPIC -DPIC -o .libs/libplinkseq_la-statistics.o In file included from matrix.h:5, from statistics.h:4, from statistics.cpp:1: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-pp.pb.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-pp.pb.lo -MD -MP -MF .deps/libplinkseq_la-pp.pb.Tpo -c pp.pb.cpp -o libplinkseq_la-pp.pb.o >/dev/null 2>&1 --- libplinkseq_la-varmeta.lo --- mv -f .deps/libplinkseq_la-varmeta.Tpo .deps/libplinkseq_la-varmeta.Plo --- libplinkseq_la-dcdflib.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-dcdflib.lo -MD -MP -MF .deps/libplinkseq_la-dcdflib.Tpo -c -o libplinkseq_la-dcdflib.lo `test -f 'dcdflib.cpp' || echo './'`dcdflib.cpp --- libplinkseq_la-pp.lo --- mv -f .deps/libplinkseq_la-pp.Tpo .deps/libplinkseq_la-pp.Plo --- libplinkseq_la-bgzf.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-bgzf.lo -MD -MP -MF .deps/libplinkseq_la-bgzf.Tpo -c -o libplinkseq_la-bgzf.lo `test -f 'bgzf.cpp' || echo './'`bgzf.cpp --- libplinkseq_la-dcdflib.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-dcdflib.lo -MD -MP -MF .deps/libplinkseq_la-dcdflib.Tpo -c dcdflib.cpp -fPIC -DPIC -o .libs/libplinkseq_la-dcdflib.o --- libplinkseq_la-bgzf.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-bgzf.lo -MD -MP -MF .deps/libplinkseq_la-bgzf.Tpo -c bgzf.cpp -fPIC -DPIC -o .libs/libplinkseq_la-bgzf.o --- libplinkseq_la-statistics.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-statistics.lo -MD -MP -MF .deps/libplinkseq_la-statistics.Tpo -c statistics.cpp -o libplinkseq_la-statistics.o >/dev/null 2>&1 --- libplinkseq_la-bgzf.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-bgzf.lo -MD -MP -MF .deps/libplinkseq_la-bgzf.Tpo -c bgzf.cpp -o libplinkseq_la-bgzf.o >/dev/null 2>&1 --- libplinkseq_la-dcdflib.lo --- In file included from dcdflib.cpp:6: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-bgzf.lo --- mv -f .deps/libplinkseq_la-bgzf.Tpo .deps/libplinkseq_la-bgzf.Plo --- libplinkseq_la-fisher.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-fisher.lo -MD -MP -MF .deps/libplinkseq_la-fisher.Tpo -c -o libplinkseq_la-fisher.lo `test -f 'fisher.cpp' || echo './'`fisher.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-fisher.lo -MD -MP -MF .deps/libplinkseq_la-fisher.Tpo -c fisher.cpp -fPIC -DPIC -o .libs/libplinkseq_la-fisher.o In file included from fisher.h:25, from fisher.cpp:4: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-dcdflib.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-dcdflib.lo -MD -MP -MF .deps/libplinkseq_la-dcdflib.Tpo -c dcdflib.cpp -o libplinkseq_la-dcdflib.o >/dev/null 2>&1 --- libplinkseq_la-fisher.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-fisher.lo -MD -MP -MF .deps/libplinkseq_la-fisher.Tpo -c fisher.cpp -o libplinkseq_la-fisher.o >/dev/null 2>&1 --- libplinkseq_la-statistics.lo --- mv -f .deps/libplinkseq_la-statistics.Tpo .deps/libplinkseq_la-statistics.Plo --- libplinkseq_la-glm.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-glm.lo -MD -MP -MF .deps/libplinkseq_la-glm.Tpo -c -o libplinkseq_la-glm.lo `test -f 'glm.cpp' || echo './'`glm.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-glm.lo -MD -MP -MF .deps/libplinkseq_la-glm.Tpo -c glm.cpp -fPIC -DPIC -o .libs/libplinkseq_la-glm.o In file included from matrix.h:5, from glm.h:4, from glm.cpp:2: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ glm.h: In member function 'bool GLM::valid(bool)': glm.h:44:45: warning: no return statement in function returning non-void [-Wreturn-type] 44 | bool valid(const bool b) { all_valid = b; }; | ^ --- libplinkseq_la-pp.pb.lo --- mv -f .deps/libplinkseq_la-pp.pb.Tpo .deps/libplinkseq_la-pp.pb.Plo --- libplinkseq_la-matrix.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-matrix.lo -MD -MP -MF .deps/libplinkseq_la-matrix.Tpo -c -o libplinkseq_la-matrix.lo `test -f 'matrix.cpp' || echo './'`matrix.cpp --- libplinkseq_la-glm.lo --- glm.cpp: In member function 'bool GLM::fit_linear()': glm.cpp:371:1: warning: control reaches end of non-void function [-Wreturn-type] 371 | } | ^ --- libplinkseq_la-matrix.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-matrix.lo -MD -MP -MF .deps/libplinkseq_la-matrix.Tpo -c matrix.cpp -fPIC -DPIC -o .libs/libplinkseq_la-matrix.o In file included from matrix.h:5, from matrix.cpp:1: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-fisher.lo --- mv -f .deps/libplinkseq_la-fisher.Tpo .deps/libplinkseq_la-fisher.Plo --- libplinkseq_la-iterate.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-iterate.lo -MD -MP -MF .deps/libplinkseq_la-iterate.Tpo -c -o libplinkseq_la-iterate.lo `test -f 'iterate.cpp' || echo './'`iterate.cpp --- libplinkseq_la-dcdflib.lo --- mv -f .deps/libplinkseq_la-dcdflib.Tpo .deps/libplinkseq_la-dcdflib.Plo --- libplinkseq_la-vcfiterate.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-vcfiterate.lo -MD -MP -MF .deps/libplinkseq_la-vcfiterate.Tpo -c -o libplinkseq_la-vcfiterate.lo `test -f 'vcfiterate.cpp' || echo './'`vcfiterate.cpp --- libplinkseq_la-iterate.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-iterate.lo -MD -MP -MF .deps/libplinkseq_la-iterate.Tpo -c iterate.cpp -fPIC -DPIC -o .libs/libplinkseq_la-iterate.o --- libplinkseq_la-vcfiterate.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-vcfiterate.lo -MD -MP -MF .deps/libplinkseq_la-vcfiterate.Tpo -c vcfiterate.cpp -fPIC -DPIC -o .libs/libplinkseq_la-vcfiterate.o --- libplinkseq_la-matrix.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-matrix.lo -MD -MP -MF .deps/libplinkseq_la-matrix.Tpo -c matrix.cpp -o libplinkseq_la-matrix.o >/dev/null 2>&1 --- libplinkseq_la-glm.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-glm.lo -MD -MP -MF .deps/libplinkseq_la-glm.Tpo -c glm.cpp -o libplinkseq_la-glm.o >/dev/null 2>&1 --- libplinkseq_la-iterate.lo --- In file included from iterrep.h:4, from vardb.h:4, from iterate.cpp:2: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-vcfiterate.lo --- In file included from iterrep.h:4, from vardb.h:4, from vcfiterate.cpp:1: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- libplinkseq_la-matrix.lo --- mv -f .deps/libplinkseq_la-matrix.Tpo .deps/libplinkseq_la-matrix.Plo --- libplinkseq_la-netdb.lo --- /usr/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-netdb.lo -MD -MP -MF .deps/libplinkseq_la-netdb.Tpo -c -o libplinkseq_la-netdb.lo `test -f 'netdb.cpp' || echo './'`netdb.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-netdb.lo -MD -MP -MF .deps/libplinkseq_la-netdb.Tpo -c netdb.cpp -fPIC -DPIC -o .libs/libplinkseq_la-netdb.o --- libplinkseq_la-vcfiterate.lo --- In file included from mask.h:8, from vardb.h:8: eval.h: In member function 'bool Eval::genmeta(bool)': eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ --- libplinkseq_la-glm.lo --- mv -f .deps/libplinkseq_la-glm.Tpo .deps/libplinkseq_la-glm.Plo --- libplinkseq_la-sqlite3.lo --- /usr/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT libplinkseq_la-sqlite3.lo -MD -MP -MF .deps/libplinkseq_la-sqlite3.Tpo -c -o libplinkseq_la-sqlite3.lo `test -f 'sqlite3.c' || echo './'`sqlite3.c --- libplinkseq_la-vcfiterate.lo --- vardb.h: In member function 'bool VarDBase::compression(bool)': vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ --- libplinkseq_la-sqlite3.lo --- libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-sqlite3.lo -MD -MP -MF .deps/libplinkseq_la-sqlite3.Tpo -c sqlite3.c -fPIC -DPIC -o .libs/libplinkseq_la-sqlite3.o --- libplinkseq_la-vcfiterate.lo --- vcfiterate.cpp: In member function 'bool VarDBase::vcf_iterate_read_header(Mask&)': vcfiterate.cpp:68:1: warning: no return statement in function returning non-void [-Wreturn-type] 68 | } | ^ --- libplinkseq_la-iterate.lo --- In file included from mask.h:8, from vardb.h:8: eval.h: In member function 'bool Eval::genmeta(bool)': eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ vardb.h: In member function 'bool VarDBase::compression(bool)': vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ --- libplinkseq_la-netdb.lo --- In file included from sqlwrap.h:9, from netdb.h:10, from netdb.cpp:1: helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ netdb.cpp: In member function 'bool NetDBase::dettach()': netdb.cpp:87:1: warning: no return statement in function returning non-void [-Wreturn-type] 87 | } | ^ --- libplinkseq_la-vcfiterate.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-vcfiterate.lo -MD -MP -MF .deps/libplinkseq_la-vcfiterate.Tpo -c vcfiterate.cpp -o libplinkseq_la-vcfiterate.o >/dev/null 2>&1 --- libplinkseq_la-netdb.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-netdb.lo -MD -MP -MF .deps/libplinkseq_la-netdb.Tpo -c netdb.cpp -o libplinkseq_la-netdb.o >/dev/null 2>&1 --- libplinkseq_la-iterate.lo --- libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-iterate.lo -MD -MP -MF .deps/libplinkseq_la-iterate.Tpo -c iterate.cpp -o libplinkseq_la-iterate.o >/dev/null 2>&1 --- libplinkseq_la-sqlite3.lo --- sqlite3.c: In function 'sqlite3SelectNew': sqlite3.c:92792:10: warning: function may return address of local variable [-Wreturn-local-addr] 92792 | return pNew; | ^~~~ sqlite3.c:92758:10: note: declared here 92758 | Select standin; | ^~~~~~~ --- libplinkseq_la-vcfiterate.lo --- mv -f .deps/libplinkseq_la-vcfiterate.Tpo .deps/libplinkseq_la-vcfiterate.Plo --- libplinkseq_la-netdb.lo --- mv -f .deps/libplinkseq_la-netdb.Tpo .deps/libplinkseq_la-netdb.Plo --- libplinkseq_la-iterate.lo --- mv -f .deps/libplinkseq_la-iterate.Tpo .deps/libplinkseq_la-iterate.Plo --- libplinkseq_la-sqlite3.lo --- libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT libplinkseq_la-sqlite3.lo -MD -MP -MF .deps/libplinkseq_la-sqlite3.Tpo -c sqlite3.c -o libplinkseq_la-sqlite3.o >/dev/null 2>&1 mv -f .deps/libplinkseq_la-sqlite3.Tpo .deps/libplinkseq_la-sqlite3.Plo --- libplinkseq.la --- /usr/bin/bash ../libtool --tag=CXX --mode=link g++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -lsocket -lnsl -L/opt/pkg/lib -Wl,-R/opt/pkg/lib -o libplinkseq.la -rpath /opt/pkg/lib libplinkseq_la-eval.lo libplinkseq_la-token.lo libplinkseq_la-vcfz.lo libplinkseq_la-gstore.lo libplinkseq_la-globals.lo libplinkseq_la-variant.lo libplinkseq_la-svar.lo libplinkseq_la-genotype.lo libplinkseq_la-meta.lo libplinkseq_la-regions.lo libplinkseq_la-filemap.lo libplinkseq_la-vcf.lo libplinkseq_la-bcf.lo libplinkseq_la-zfstream.lo libplinkseq_la-sqlwrap.lo libplinkseq_la-helper.lo libplinkseq_la-locdb.lo libplinkseq_la-vardb.lo libplinkseq_la-segments.lo libplinkseq_la-varfunc.lo libplinkseq_la-variant.pb.lo libplinkseq_la-refdb.lo libplinkseq_la-seqdb.lo libplinkseq_la-annot.lo libplinkseq_la-inddb.lo libplinkseq_la-mask.lo libplinkseq_la-reffuncs.lo libplinkseq_la-vgroup.lo libplinkseq_la-allele.lo libplinkseq_la-individual.lo libplinkseq_la-indmap.lo libplinkseq_la-phmap.lo libplinkseq_la-permute.lo libplinkseq_la-crandom.lo libplinkseq_la-defs.lo libplinkseq_la-em.lo libplinkseq_la-bed.lo libplinkseq_la-varmeta.lo libplinkseq_la-pp.lo libplinkseq_la-pp.pb.lo libplinkseq_la-statistics.lo libplinkseq_la-dcdflib.lo libplinkseq_la-bgzf.lo libplinkseq_la-fisher.lo libplinkseq_la-glm.lo libplinkseq_la-matrix.lo libplinkseq_la-iterate.lo libplinkseq_la-vcfiterate.lo libplinkseq_la-netdb.lo libplinkseq_la-sqlite3.lo -lz -lprotobuf libtool: link: g++ -shared -fPIC -DPIC .libs/libplinkseq_la-eval.o .libs/libplinkseq_la-token.o .libs/libplinkseq_la-vcfz.o .libs/libplinkseq_la-gstore.o .libs/libplinkseq_la-globals.o .libs/libplinkseq_la-variant.o .libs/libplinkseq_la-svar.o .libs/libplinkseq_la-genotype.o .libs/libplinkseq_la-meta.o .libs/libplinkseq_la-regions.o .libs/libplinkseq_la-filemap.o .libs/libplinkseq_la-vcf.o .libs/libplinkseq_la-bcf.o .libs/libplinkseq_la-zfstream.o .libs/libplinkseq_la-sqlwrap.o .libs/libplinkseq_la-helper.o .libs/libplinkseq_la-locdb.o .libs/libplinkseq_la-vardb.o .libs/libplinkseq_la-segments.o .libs/libplinkseq_la-varfunc.o .libs/libplinkseq_la-variant.pb.o .libs/libplinkseq_la-refdb.o .libs/libplinkseq_la-seqdb.o .libs/libplinkseq_la-annot.o .libs/libplinkseq_la-inddb.o .libs/libplinkseq_la-mask.o .libs/libplinkseq_la-reffuncs.o .libs/libplinkseq_la-vgroup.o .libs/libplinkseq_la-allele.o .libs/libplinkseq_la-individual.o .libs/libplinkseq_la-indmap.o .libs/libplinkseq_la-phmap.o .libs/libplinkseq_la-permute.o .libs/libplinkseq_la-crandom.o .libs/libplinkseq_la-defs.o .libs/libplinkseq_la-em.o .libs/libplinkseq_la-bed.o .libs/libplinkseq_la-varmeta.o .libs/libplinkseq_la-pp.o .libs/libplinkseq_la-pp.pb.o .libs/libplinkseq_la-statistics.o .libs/libplinkseq_la-dcdflib.o .libs/libplinkseq_la-bgzf.o .libs/libplinkseq_la-fisher.o .libs/libplinkseq_la-glm.o .libs/libplinkseq_la-matrix.o .libs/libplinkseq_la-iterate.o .libs/libplinkseq_la-vcfiterate.o .libs/libplinkseq_la-netdb.o .libs/libplinkseq_la-sqlite3.o -Wl,-R -Wl,/home/pbulk/build/biology/plinkseq/work/.buildlink/lib -Wl,-R -Wl,/home/pbulk/build/biology/plinkseq/work/.buildlink/lib -lsocket -lnsl -L/home/pbulk/build/biology/plinkseq/work/.buildlink/lib /home/pbulk/build/biology/plinkseq/work/.buildlink/lib/libz.so -lprotobuf -O2 -msave-args -Wl,-rpath -Wl,/opt/pkg/lib -Wl,-h -Wl,libplinkseq.so.0 -o .libs/libplinkseq.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libplinkseq.so.0" && ln -s "libplinkseq.so.0.0.0" "libplinkseq.so.0") libtool: link: (cd ".libs" && rm -f "libplinkseq.so" && ln -s "libplinkseq.so.0.0.0" "libplinkseq.so") libtool: link: ar cr .libs/libplinkseq.a libplinkseq_la-eval.o libplinkseq_la-token.o libplinkseq_la-vcfz.o libplinkseq_la-gstore.o libplinkseq_la-globals.o libplinkseq_la-variant.o libplinkseq_la-svar.o libplinkseq_la-genotype.o libplinkseq_la-meta.o libplinkseq_la-regions.o libplinkseq_la-filemap.o libplinkseq_la-vcf.o libplinkseq_la-bcf.o libplinkseq_la-zfstream.o libplinkseq_la-sqlwrap.o libplinkseq_la-helper.o libplinkseq_la-locdb.o libplinkseq_la-vardb.o libplinkseq_la-segments.o libplinkseq_la-varfunc.o libplinkseq_la-variant.pb.o libplinkseq_la-refdb.o libplinkseq_la-seqdb.o libplinkseq_la-annot.o libplinkseq_la-inddb.o libplinkseq_la-mask.o libplinkseq_la-reffuncs.o libplinkseq_la-vgroup.o libplinkseq_la-allele.o libplinkseq_la-individual.o libplinkseq_la-indmap.o libplinkseq_la-phmap.o libplinkseq_la-permute.o libplinkseq_la-crandom.o libplinkseq_la-defs.o libplinkseq_la-em.o libplinkseq_la-bed.o libplinkseq_la-varmeta.o libplinkseq_la-pp.o libplinkseq_la-pp.pb.o libplinkseq_la-statistics.o libplinkseq_la-dcdflib.o libplinkseq_la-bgzf.o libplinkseq_la-fisher.o libplinkseq_la-glm.o libplinkseq_la-matrix.o libplinkseq_la-iterate.o libplinkseq_la-vcfiterate.o libplinkseq_la-netdb.o libplinkseq_la-sqlite3.o libtool: link: ranlib .libs/libplinkseq.a libtool: link: ( cd ".libs" && rm -f "libplinkseq.la" && ln -s "../libplinkseq.la" "libplinkseq.la" ) Making all in client --- pseq-util.o --- --- pseq-ibs.o --- --- pseq-main.o --- --- pseq-func.o --- --- pseq-ibs.o --- g++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-ibs.o -MD -MP -MF .deps/pseq-ibs.Tpo -c -o pseq-ibs.o `test -f 'ibs.cpp' || echo './'`ibs.cpp --- pseq-main.o --- g++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-main.o -MD -MP -MF .deps/pseq-main.Tpo -c -o pseq-main.o `test -f 'main.cpp' || echo './'`main.cpp --- pseq-util.o --- g++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-util.o -MD -MP -MF .deps/pseq-util.Tpo -c -o pseq-util.o `test -f 'util.cpp' || echo './'`util.cpp --- pseq-func.o --- g++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-func.o -MD -MP -MF .deps/pseq-func.Tpo -c -o pseq-func.o `test -f 'func.cpp' || echo './'`func.cpp --- pseq-main.o --- In file included from ../lib/filemap.h:30, from ../lib/pseq.h:5, from main.cpp:5: ../lib/helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': ../lib/helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- pseq-func.o --- In file included from ../lib/filemap.h:30, from ../lib/pseq.h:5, from func.h:4, from func.cpp:2: ../lib/helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': ../lib/helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- pseq-util.o --- In file included from util.cpp:2: ../lib/helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': ../lib/helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- pseq-ibs.o --- In file included from ../lib/filemap.h:30, from ../lib/pseq.h:5, from ibs.h:7, from ibs.cpp:1: ../lib/helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': ../lib/helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- pseq-main.o --- In file included from ../lib/mask.h:8, from ../lib/vardb.h:8, from ../lib/gstore.h:15, from ../lib/pseq.h:7: ../lib/eval.h: In member function 'bool Eval::genmeta(bool)': ../lib/eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ ../lib/vardb.h: In member function 'bool VarDBase::compression(bool)': ../lib/vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ --- pseq-ibs.o --- In file included from ../lib/mask.h:8, from ../lib/vardb.h:8, from ../lib/gstore.h:15, from ../lib/pseq.h:7: ../lib/eval.h: In member function 'bool Eval::genmeta(bool)': ../lib/eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ --- pseq-main.o --- In file included from ../lib/pseq.h:34: ../lib/glm.h: In member function 'bool GLM::valid(bool)': ../lib/glm.h:44:45: warning: no return statement in function returning non-void [-Wreturn-type] 44 | bool valid(const bool b) { all_valid = b; }; | ^ --- pseq-util.o --- In file included from ../lib/mask.h:8, from ../lib/vardb.h:8, from ../lib/gstore.h:15, from ../lib/pseq.h:7, from util.h:4, from util.cpp:3: ../lib/eval.h: In member function 'bool Eval::genmeta(bool)': ../lib/eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ --- pseq-func.o --- In file included from ../lib/mask.h:8, from ../lib/vardb.h:8, from ../lib/gstore.h:15, from ../lib/pseq.h:7: ../lib/eval.h: In member function 'bool Eval::genmeta(bool)': ../lib/eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ --- pseq-util.o --- ../lib/vardb.h: In member function 'bool VarDBase::compression(bool)': ../lib/vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ --- pseq-func.o --- ../lib/vardb.h: In member function 'bool VarDBase::compression(bool)': ../lib/vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ --- pseq-ibs.o --- ../lib/vardb.h: In member function 'bool VarDBase::compression(bool)': ../lib/vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ --- pseq-func.o --- In file included from ../lib/pseq.h:34: ../lib/glm.h: In member function 'bool GLM::valid(bool)': ../lib/glm.h:44:45: warning: no return statement in function returning non-void [-Wreturn-type] 44 | bool valid(const bool b) { all_valid = b; }; | ^ --- pseq-ibs.o --- In file included from ../lib/pseq.h:34: ../lib/glm.h: In member function 'bool GLM::valid(bool)': ../lib/glm.h:44:45: warning: no return statement in function returning non-void [-Wreturn-type] 44 | bool valid(const bool b) { all_valid = b; }; | ^ --- pseq-util.o --- In file included from ../lib/pseq.h:34: ../lib/glm.h: In member function 'bool GLM::valid(bool)': ../lib/glm.h:44:45: warning: no return statement in function returning non-void [-Wreturn-type] 44 | bool valid(const bool b) { all_valid = b; }; | ^ --- pseq-ibs.o --- ibs.cpp: In function 'bool Pseq::IBS::calculate(Mask&)': ibs.cpp:53:1: warning: no return statement in function returning non-void [-Wreturn-type] 53 | } | ^ --- pseq-func.o --- func.cpp: In function 'bool Pseq::new_project(std::string, Util::Options&)': func.cpp:153:1: warning: no return statement in function returning non-void [-Wreturn-type] 153 | } | ^ func.cpp: In function 'bool Pseq::VarDB::write_haps(Mask&, const std::string&)': func.cpp:426:1: warning: no return statement in function returning non-void [-Wreturn-type] 426 | } | ^ func.cpp: In function 'bool Pseq::VarDB::consolidate(Mask&, std::string)': func.cpp:524:1: warning: no return statement in function returning non-void [-Wreturn-type] 524 | } | ^ func.cpp: In function 'bool Pseq::VarDB::variant_stats(Mask&)': func.cpp:622:1: warning: no return statement in function returning non-void [-Wreturn-type] 622 | } | ^ func.cpp: In function 'bool Pseq::RefDB::attach(std::string)': func.cpp:963:1: warning: no return statement in function returning non-void [-Wreturn-type] 963 | } | ^ func.cpp: In function 'bool Pseq::PPH2DB::score(Mask&, const std::string&)': func.cpp:1611:1: warning: no return statement in function returning non-void [-Wreturn-type] 1611 | } | ^ func.cpp: In function 'bool Pseq::VarDB::write_VCF(Mask&, bool)': func.cpp:247:1: warning: control reaches end of non-void function [-Wreturn-type] 247 | } | ^ --- pseq-ibs.o --- mv -f .deps/pseq-ibs.Tpo .deps/pseq-ibs.Po --- pseq-summaries.o --- g++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-summaries.o -MD -MP -MF .deps/pseq-summaries.Tpo -c -o pseq-summaries.o `test -f 'summaries.cpp' || echo './'`summaries.cpp In file included from ../lib/filemap.h:30, from ../lib/pseq.h:5, from func.h:4, from summaries.h:5, from summaries.cpp:2: ../lib/helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': ../lib/helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ In file included from ../lib/mask.h:8, from ../lib/vardb.h:8, from ../lib/gstore.h:15, from ../lib/pseq.h:7: ../lib/eval.h: In member function 'bool Eval::genmeta(bool)': ../lib/eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ ../lib/vardb.h: In member function 'bool VarDBase::compression(bool)': ../lib/vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ In file included from ../lib/pseq.h:34: ../lib/glm.h: In member function 'bool GLM::valid(bool)': ../lib/glm.h:44:45: warning: no return statement in function returning non-void [-Wreturn-type] 44 | bool valid(const bool b) { all_valid = b; }; | ^ --- pseq-util.o --- mv -f .deps/pseq-util.Tpo .deps/pseq-util.Po --- pseq-views.o --- g++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-views.o -MD -MP -MF .deps/pseq-views.Tpo -c -o pseq-views.o `test -f 'views.cpp' || echo './'`views.cpp In file included from ../lib/filemap.h:30, from ../lib/pseq.h:5, from views.h:9, from views.cpp:2: ../lib/helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': ../lib/helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- pseq-func.o --- mv -f .deps/pseq-func.Tpo .deps/pseq-func.Po --- pseq-assoc.o --- g++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-assoc.o -MD -MP -MF .deps/pseq-assoc.Tpo -c -o pseq-assoc.o `test -f 'assoc.cpp' || echo './'`assoc.cpp In file included from ../lib/matrix.h:5, from assoc.h:4, from assoc.cpp:1: ../lib/helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': ../lib/helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- pseq-main.o --- mv -f .deps/pseq-main.Tpo .deps/pseq-main.Po --- pseq-genic.o --- g++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-genic.o -MD -MP -MF .deps/pseq-genic.Tpo -c -o pseq-genic.o `test -f 'genic.cpp' || echo './'`genic.cpp --- pseq-views.o --- In file included from ../lib/mask.h:8, from ../lib/vardb.h:8, from ../lib/gstore.h:15, from ../lib/pseq.h:7: ../lib/eval.h: In member function 'bool Eval::genmeta(bool)': ../lib/eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ ../lib/vardb.h: In member function 'bool VarDBase::compression(bool)': ../lib/vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ In file included from ../lib/pseq.h:34: ../lib/glm.h: In member function 'bool GLM::valid(bool)': ../lib/glm.h:44:45: warning: no return statement in function returning non-void [-Wreturn-type] 44 | bool valid(const bool b) { all_valid = b; }; | ^ --- pseq-genic.o --- In file included from ../lib/filemap.h:30, from ../lib/pseq.h:5, from genic.h:5, from genic.cpp:1: ../lib/helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': ../lib/helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- pseq-assoc.o --- In file included from ../lib/mask.h:8, from ../lib/vardb.h:8, from ../lib/gstore.h:15, from ../lib/pseq.h:7, from func.h:4, from assoc.h:5: ../lib/eval.h: In member function 'bool Eval::genmeta(bool)': ../lib/eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ ../lib/vardb.h: In member function 'bool VarDBase::compression(bool)': ../lib/vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ In file included from ../lib/pseq.h:34: ../lib/glm.h: In member function 'bool GLM::valid(bool)': ../lib/glm.h:44:45: warning: no return statement in function returning non-void [-Wreturn-type] 44 | bool valid(const bool b) { all_valid = b; }; | ^ --- pseq-genic.o --- In file included from ../lib/mask.h:8, from ../lib/vardb.h:8, from ../lib/gstore.h:15, from ../lib/pseq.h:7: ../lib/eval.h: In member function 'bool Eval::genmeta(bool)': ../lib/eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ ../lib/vardb.h: In member function 'bool VarDBase::compression(bool)': ../lib/vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ In file included from ../lib/pseq.h:34: ../lib/glm.h: In member function 'bool GLM::valid(bool)': ../lib/glm.h:44:45: warning: no return statement in function returning non-void [-Wreturn-type] 44 | bool valid(const bool b) { all_valid = b; }; | ^ --- pseq-summaries.o --- mv -f .deps/pseq-summaries.Tpo .deps/pseq-summaries.Po --- pseq-compare.o --- g++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-compare.o -MD -MP -MF .deps/pseq-compare.Tpo -c -o pseq-compare.o `test -f 'compare.cpp' || echo './'`compare.cpp In file included from ../lib/filemap.h:30, from ../lib/pseq.h:5, from compare.cpp:2: ../lib/helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': ../lib/helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- pseq-views.o --- mv -f .deps/pseq-views.Tpo .deps/pseq-views.Po --- pseq-ibd.o --- g++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-ibd.o -MD -MP -MF .deps/pseq-ibd.Tpo -c -o pseq-ibd.o `test -f 'ibd.cpp' || echo './'`ibd.cpp --- pseq-assoc.o --- mv -f .deps/pseq-assoc.Tpo .deps/pseq-assoc.Po --- pseq-loaders.o --- g++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-loaders.o -MD -MP -MF .deps/pseq-loaders.Tpo -c -o pseq-loaders.o `test -f 'loaders.cpp' || echo './'`loaders.cpp --- pseq-genic.o --- mv -f .deps/pseq-genic.Tpo .deps/pseq-genic.Po --- pseq-clusters.o --- g++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-clusters.o -MD -MP -MF .deps/pseq-clusters.Tpo -c -o pseq-clusters.o `test -f 'clusters.cpp' || echo './'`clusters.cpp --- pseq-compare.o --- In file included from ../lib/mask.h:8, from ../lib/vardb.h:8, from ../lib/gstore.h:15, from ../lib/pseq.h:7: ../lib/eval.h: In member function 'bool Eval::genmeta(bool)': ../lib/eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ --- pseq-ibd.o --- In file included from ../lib/filemap.h:30, from ../lib/pseq.h:5, from ibd.h:9, from ibd.cpp:1: ../lib/helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': ../lib/helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- pseq-compare.o --- ../lib/vardb.h: In member function 'bool VarDBase::compression(bool)': ../lib/vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ In file included from ../lib/pseq.h:34: ../lib/glm.h: In member function 'bool GLM::valid(bool)': ../lib/glm.h:44:45: warning: no return statement in function returning non-void [-Wreturn-type] 44 | bool valid(const bool b) { all_valid = b; }; | ^ --- pseq-loaders.o --- In file included from ../lib/filemap.h:30, from ../lib/pseq.h:5, from loaders.h:4, from loaders.cpp:1: ../lib/helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': ../lib/helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- pseq-clusters.o --- In file included from ../lib/filemap.h:30, from ../lib/pseq.h:5, from func.h:4, from clusters.cpp:3: ../lib/helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': ../lib/helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- pseq-compare.o --- mv -f .deps/pseq-compare.Tpo .deps/pseq-compare.Po --- pseq-varfunc.o --- g++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-varfunc.o -MD -MP -MF .deps/pseq-varfunc.Tpo -c -o pseq-varfunc.o `test -f 'varfunc.cpp' || echo './'`varfunc.cpp --- pseq-ibd.o --- In file included from ../lib/mask.h:8, from ../lib/vardb.h:8, from ../lib/gstore.h:15, from ../lib/pseq.h:7: ../lib/eval.h: In member function 'bool Eval::genmeta(bool)': ../lib/eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ ../lib/vardb.h: In member function 'bool VarDBase::compression(bool)': ../lib/vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ In file included from ../lib/pseq.h:34: ../lib/glm.h: In member function 'bool GLM::valid(bool)': ../lib/glm.h:44:45: warning: no return statement in function returning non-void [-Wreturn-type] 44 | bool valid(const bool b) { all_valid = b; }; | ^ --- pseq-clusters.o --- In file included from ../lib/mask.h:8, from ../lib/vardb.h:8, from ../lib/gstore.h:15, from ../lib/pseq.h:7: ../lib/eval.h: In member function 'bool Eval::genmeta(bool)': ../lib/eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ ../lib/vardb.h: In member function 'bool VarDBase::compression(bool)': ../lib/vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ --- pseq-loaders.o --- In file included from ../lib/mask.h:8, from ../lib/vardb.h:8, from ../lib/gstore.h:15, from ../lib/pseq.h:7: ../lib/eval.h: In member function 'bool Eval::genmeta(bool)': ../lib/eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ --- pseq-clusters.o --- In file included from ../lib/pseq.h:34: ../lib/glm.h: In member function 'bool GLM::valid(bool)': ../lib/glm.h:44:45: warning: no return statement in function returning non-void [-Wreturn-type] 44 | bool valid(const bool b) { all_valid = b; }; | ^ --- pseq-loaders.o --- ../lib/vardb.h: In member function 'bool VarDBase::compression(bool)': ../lib/vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ In file included from ../lib/pseq.h:34: ../lib/glm.h: In member function 'bool GLM::valid(bool)': ../lib/glm.h:44:45: warning: no return statement in function returning non-void [-Wreturn-type] 44 | bool valid(const bool b) { all_valid = b; }; | ^ loaders.cpp: In function 'bool Pseq::VarDB::insert_meta_from_file(const std::string&)': loaders.cpp:723:1: warning: no return statement in function returning non-void [-Wreturn-type] 723 | } | ^ loaders.cpp: In function 'bool Pseq::VarDB::insert_meta_on_fly(const std::string&)': loaders.cpp:728:1: warning: no return statement in function returning non-void [-Wreturn-type] 728 | } | ^ --- pseq-varfunc.o --- In file included from ../lib/filemap.h:30, from ../lib/pseq.h:5, from util.h:4, from varfunc.cpp:2: ../lib/helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': ../lib/helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- pseq-clusters.o --- mv -f .deps/pseq-clusters.Tpo .deps/pseq-clusters.Po --- pseq-glm-tests.o --- g++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-glm-tests.o -MD -MP -MF .deps/pseq-glm-tests.Tpo -c -o pseq-glm-tests.o `test -f 'glm-tests.cpp' || echo './'`glm-tests.cpp --- pseq-varfunc.o --- In file included from ../lib/mask.h:8, from ../lib/vardb.h:8, from ../lib/gstore.h:15, from ../lib/pseq.h:7: ../lib/eval.h: In member function 'bool Eval::genmeta(bool)': ../lib/eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ ../lib/vardb.h: In member function 'bool VarDBase::compression(bool)': ../lib/vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ --- pseq-glm-tests.o --- In file included from ../lib/matrix.h:5, from assoc.h:4, from glm-tests.cpp:1: ../lib/helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': ../lib/helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- pseq-varfunc.o --- In file included from ../lib/pseq.h:34: ../lib/glm.h: In member function 'bool GLM::valid(bool)': ../lib/glm.h:44:45: warning: no return statement in function returning non-void [-Wreturn-type] 44 | bool valid(const bool b) { all_valid = b; }; | ^ varfunc.cpp: In function 'bool Pseq::VarDB::check_concordance(Mask&)': varfunc.cpp:360:1: warning: no return statement in function returning non-void [-Wreturn-type] 360 | } | ^ --- pseq-ibd.o --- mv -f .deps/pseq-ibd.Tpo .deps/pseq-ibd.Po --- pseq-stepup.o --- g++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-stepup.o -MD -MP -MF .deps/pseq-stepup.Tpo -c -o pseq-stepup.o `test -f 'stepup.cpp' || echo './'`stepup.cpp --- pseq-loaders.o --- mv -f .deps/pseq-loaders.Tpo .deps/pseq-loaders.Po --- pseq-kbac.o --- g++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-kbac.o -MD -MP -MF .deps/pseq-kbac.Tpo -c -o pseq-kbac.o `test -f 'kbac.cpp' || echo './'`kbac.cpp --- pseq-glm-tests.o --- In file included from ../lib/mask.h:8, from ../lib/vardb.h:8, from ../lib/gstore.h:15, from ../lib/pseq.h:7, from func.h:4, from assoc.h:5: ../lib/eval.h: In member function 'bool Eval::genmeta(bool)': ../lib/eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ ../lib/vardb.h: In member function 'bool VarDBase::compression(bool)': ../lib/vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ In file included from ../lib/pseq.h:34: ../lib/glm.h: In member function 'bool GLM::valid(bool)': ../lib/glm.h:44:45: warning: no return statement in function returning non-void [-Wreturn-type] 44 | bool valid(const bool b) { all_valid = b; }; | ^ --- pseq-stepup.o --- In file included from ../lib/filemap.h:30, from ../lib/pseq.h:5, from genic.h:5, from stepup.cpp:2: ../lib/helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': ../lib/helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- pseq-kbac.o --- In file included from ../lib/filemap.h:30, from ../lib/pseq.h:5, from kbac.cpp:2: ../lib/helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': ../lib/helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- pseq-stepup.o --- In file included from ../lib/mask.h:8, from ../lib/vardb.h:8, from ../lib/gstore.h:15, from ../lib/pseq.h:7: ../lib/eval.h: In member function 'bool Eval::genmeta(bool)': ../lib/eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ ../lib/vardb.h: In member function 'bool VarDBase::compression(bool)': ../lib/vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ In file included from ../lib/pseq.h:34: ../lib/glm.h: In member function 'bool GLM::valid(bool)': ../lib/glm.h:44:45: warning: no return statement in function returning non-void [-Wreturn-type] 44 | bool valid(const bool b) { all_valid = b; }; | ^ --- pseq-kbac.o --- In file included from ../lib/mask.h:8, from ../lib/vardb.h:8, from ../lib/gstore.h:15, from ../lib/pseq.h:7: ../lib/eval.h: In member function 'bool Eval::genmeta(bool)': ../lib/eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ ../lib/vardb.h: In member function 'bool VarDBase::compression(bool)': ../lib/vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ In file included from ../lib/pseq.h:34: ../lib/glm.h: In member function 'bool GLM::valid(bool)': ../lib/glm.h:44:45: warning: no return statement in function returning non-void [-Wreturn-type] 44 | bool valid(const bool b) { all_valid = b; }; | ^ --- pseq-glm-tests.o --- mv -f .deps/pseq-glm-tests.Tpo .deps/pseq-glm-tests.Po --- pseq-netassoc.o --- g++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-netassoc.o -MD -MP -MF .deps/pseq-netassoc.Tpo -c -o pseq-netassoc.o `test -f 'netassoc.cpp' || echo './'`netassoc.cpp --- pseq-stepup.o --- mv -f .deps/pseq-stepup.Tpo .deps/pseq-stepup.Po --- pseq-gseq.o --- g++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-gseq.o -MD -MP -MF .deps/pseq-gseq.Tpo -c -o pseq-gseq.o `test -f 'gseq.cpp' || echo './'`gseq.cpp --- pseq-kbac.o --- mv -f .deps/pseq-kbac.Tpo .deps/pseq-kbac.Po --- pseq-extra.o --- g++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-extra.o -MD -MP -MF .deps/pseq-extra.Tpo -c -o pseq-extra.o `test -f 'extra.cpp' || echo './'`extra.cpp --- pseq-netassoc.o --- In file included from ../lib/filemap.h:30, from ../lib/pseq.h:5, from func.h:4, from netassoc.h:4, from netassoc.cpp:2: ../lib/helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': ../lib/helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- pseq-gseq.o --- In file included from ../lib/filemap.h:30, from ../lib/pseq.h:5, from views.h:9, from gseq.cpp:1: ../lib/helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': ../lib/helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- pseq-extra.o --- In file included from ../lib/filemap.h:30, from ../lib/pseq.h:5, from extra.cpp:4: ../lib/helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': ../lib/helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ --- pseq-varfunc.o --- mv -f .deps/pseq-varfunc.Tpo .deps/pseq-varfunc.Po --- pseq-netassoc.o --- In file included from ../lib/mask.h:8, from ../lib/vardb.h:8, from ../lib/gstore.h:15, from ../lib/pseq.h:7: ../lib/eval.h: In member function 'bool Eval::genmeta(bool)': ../lib/eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ ../lib/vardb.h: In member function 'bool VarDBase::compression(bool)': ../lib/vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ --- pseq-gseq.o --- In file included from ../lib/mask.h:8, from ../lib/vardb.h:8, from ../lib/gstore.h:15, from ../lib/pseq.h:7: ../lib/eval.h: In member function 'bool Eval::genmeta(bool)': ../lib/eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ --- pseq-netassoc.o --- In file included from ../lib/pseq.h:34: ../lib/glm.h: In member function 'bool GLM::valid(bool)': ../lib/glm.h:44:45: warning: no return statement in function returning non-void [-Wreturn-type] 44 | bool valid(const bool b) { all_valid = b; }; | ^ netassoc.cpp: In function 'bool Pseq::Assoc::NetDB::driver(const std::map, Aux_netdet>&, const Pseq::Util::Options&, Mask&)': netassoc.cpp:225:1: warning: no return statement in function returning non-void [-Wreturn-type] 225 | } | ^ --- pseq-gseq.o --- ../lib/vardb.h: In member function 'bool VarDBase::compression(bool)': ../lib/vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ In file included from ../lib/pseq.h:34: ../lib/glm.h: In member function 'bool GLM::valid(bool)': ../lib/glm.h:44:45: warning: no return statement in function returning non-void [-Wreturn-type] 44 | bool valid(const bool b) { all_valid = b; }; | ^ --- pseq-extra.o --- In file included from ../lib/mask.h:8, from ../lib/vardb.h:8, from ../lib/gstore.h:15, from ../lib/pseq.h:7: ../lib/eval.h: In member function 'bool Eval::genmeta(bool)': ../lib/eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ ../lib/vardb.h: In member function 'bool VarDBase::compression(bool)': ../lib/vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ In file included from ../lib/pseq.h:34: ../lib/glm.h: In member function 'bool GLM::valid(bool)': ../lib/glm.h:44:45: warning: no return statement in function returning non-void [-Wreturn-type] 44 | bool valid(const bool b) { all_valid = b; }; | ^ mv -f .deps/pseq-extra.Tpo .deps/pseq-extra.Po --- pseq-netassoc.o --- mv -f .deps/pseq-netassoc.Tpo .deps/pseq-netassoc.Po --- pseq-gseq.o --- mv -f .deps/pseq-gseq.Tpo .deps/pseq-gseq.Po --- pseq --- /usr/bin/bash ../libtool --tag=CXX --mode=link g++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -lz -ldl -lsocket -lnsl -L/opt/pkg/lib -Wl,-R/opt/pkg/lib -o pseq pseq-util.o pseq-ibs.o pseq-main.o pseq-func.o pseq-summaries.o pseq-views.o pseq-assoc.o pseq-genic.o pseq-compare.o pseq-ibd.o pseq-loaders.o pseq-clusters.o pseq-varfunc.o pseq-glm-tests.o pseq-stepup.o pseq-kbac.o pseq-netassoc.o pseq-gseq.o pseq-extra.o ../lib/libplinkseq.la libtool: link: g++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -Wl,-rpath -Wl,/opt/pkg/lib -o .libs/pseq pseq-util.o pseq-ibs.o pseq-main.o pseq-func.o pseq-summaries.o pseq-views.o pseq-assoc.o pseq-genic.o pseq-compare.o pseq-ibd.o pseq-loaders.o pseq-clusters.o pseq-varfunc.o pseq-glm-tests.o pseq-stepup.o pseq-kbac.o pseq-netassoc.o pseq-gseq.o pseq-extra.o -L/home/pbulk/build/biology/plinkseq/work/.buildlink/lib ../lib/.libs/libplinkseq.so -lsocket -lnsl /home/pbulk/build/biology/plinkseq/work/.buildlink/lib/libz.so -lprotobuf -Wl,-R -Wl,/opt/pkg/lib -Wl,-R -Wl,/home/pbulk/build/biology/plinkseq/work/.buildlink/lib Making all in browser --- pbrowse_cgi-psb.o --- --- mongoose-mongoose.o --- --- mongoose-main.o --- --- pbrowse_cgi-psb.o --- g++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pbrowse_cgi-psb.o -MD -MP -MF .deps/pbrowse_cgi-psb.Tpo -c -o pbrowse_cgi-psb.o `test -f 'psb.cpp' || echo './'`psb.cpp --- mongoose-mongoose.o --- gcc -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT mongoose-mongoose.o -MD -MP -MF .deps/mongoose-mongoose.Tpo -c -o mongoose-mongoose.o `test -f 'mongoose.c' || echo './'`mongoose.c --- mongoose-main.o --- gcc -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT mongoose-main.o -MD -MP -MF .deps/mongoose-main.Tpo -c -o mongoose-main.o `test -f 'main.c' || echo './'`main.c --- mongoose-mongoose.o --- mongoose.c: In function 'cry': mongoose.c:529:7: error: implicit declaration of function 'flockfile' [-Wimplicit-function-declaration] 529 | flockfile(fp); | ^~~~~~~~~ mongoose.c:545:7: error: implicit declaration of function 'funlockfile' [-Wimplicit-function-declaration] 545 | funlockfile(fp); | ^~~~~~~~~~~ *** [mongoose-mongoose.o] Error code 1 bmake[2]: stopped making "all" in /home/pbulk/build/biology/plinkseq/work/plinkseq-0.08/browser --- mongoose-main.o --- mv -f .deps/mongoose-main.Tpo .deps/mongoose-main.Po --- pbrowse_cgi-psb.o --- In file included from ../lib/filemap.h:30, from ../lib/pseq.h:5, from psb.h:4, from psb.cpp:1: ../lib/helper.h: In function 'std::ostream& operator<<(std::ostream&, const int_range&)': ../lib/helper.h:730:3: warning: no return statement in function returning non-void [-Wreturn-type] 730 | } | ^ In file included from ../lib/mask.h:8, from ../lib/vardb.h:8, from ../lib/gstore.h:15, from ../lib/pseq.h:7: ../lib/eval.h: In member function 'bool Eval::genmeta(bool)': ../lib/eval.h:36:52: warning: no return statement in function returning non-void [-Wreturn-type] 36 | bool genmeta( const bool b ) { genmeta_mode = b; } | ^ ../lib/vardb.h: In member function 'bool VarDBase::compression(bool)': ../lib/vardb.h:304:59: warning: no return statement in function returning non-void [-Wreturn-type] 304 | bool compression( const bool b ) { using_compression=b; } | ^ In file included from ../lib/pseq.h:34: ../lib/glm.h: In member function 'bool GLM::valid(bool)': ../lib/glm.h:44:45: warning: no return statement in function returning non-void [-Wreturn-type] 44 | bool valid(const bool b) { all_valid = b; }; | ^ In file included from psb.cpp:2: cgi.h: In function 'char x2c(char*)': cgi.h:19:17: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 19 | register char digit; | ^~~~~ cgi.h: In function 'void unescape_url(char*)': cgi.h:29:16: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 29 | register int i,j; | ^ cgi.h:29:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 29 | register int i,j; | ^ cgi.h: In function 'char** getcgivars()': cgi.h:45:16: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i ; | ^ mv -f .deps/pbrowse_cgi-psb.Tpo .deps/pbrowse_cgi-psb.Po bmake[2]: 1 error bmake[2]: stopped making "all" in /home/pbulk/build/biology/plinkseq/work/plinkseq-0.08/browser bmake[1]: stopped making "all-recursive" in /home/pbulk/build/biology/plinkseq/work/plinkseq-0.08 *** [all] Error code 2 bmake: stopped making "all" in /home/pbulk/build/biology/plinkseq/work/plinkseq-0.08 bmake: 1 error bmake: stopped making "all" in /home/pbulk/build/biology/plinkseq/work/plinkseq-0.08 *** Error code 2 Stop. bmake[1]: stopped making "all" in /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/plinkseq *** Error code 1 Stop. bmake: stopped making "all" in /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/plinkseq