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-L/home/pbulk/build/math/plumed/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib conftest.cpp -lz -ldl -llapack -lblas -lcblas -lblas [*] c++ -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -I/opt/pkg/include -L/opt/pkg/lib -Wl,-R/opt/pkg/lib conftest.cpp -lz -ldl -llapack -lblas -lcblas -lblas <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/math/plumed/work/.buildlink/include -fPIC -Wall -pedantic -std=c++11 -L/home/pbulk/build/math/plumed/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib conftest.cpp -lz -ldl -llapack -lblas -lcblas -lblas [*] c++ -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -I/opt/pkg/include conftest.cpp <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/math/plumed/work/.buildlink/include -fPIC -Wall -pedantic -std=c++11 conftest.cpp [*] c++ -E -I/opt/pkg/include conftest.cpp <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -E -I/home/pbulk/build/math/plumed/work/.buildlink/include conftest.cpp [*] c++ -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -I/opt/pkg/include -L/opt/pkg/lib -Wl,-R/opt/pkg/lib conftest.cpp -lz -ldl -llapack -lblas -lcblas -lblas <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/math/plumed/work/.buildlink/include -fPIC -Wall -pedantic -std=c++11 -L/home/pbulk/build/math/plumed/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib conftest.cpp -lz -ldl -llapack -lblas -lcblas -lblas [*] c++ -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -I/opt/pkg/include -L/opt/pkg/lib -Wl,-R/opt/pkg/lib conftest.cpp -lgsl -lz -ldl -llapack -lblas -lcblas -lblas <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/math/plumed/work/.buildlink/include -fPIC -Wall -pedantic -std=c++11 -L/home/pbulk/build/math/plumed/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib conftest.cpp -lgsl -lz -ldl -llapack -lblas -lcblas -lblas [*] c++ -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -I/opt/pkg/include conftest.cpp <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/math/plumed/work/.buildlink/include -fPIC -Wall -pedantic -std=c++11 conftest.cpp [*] c++ -E -I/opt/pkg/include conftest.cpp <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -E -I/home/pbulk/build/math/plumed/work/.buildlink/include conftest.cpp [*] c++ -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -I/opt/pkg/include -L/opt/pkg/lib -Wl,-R/opt/pkg/lib conftest.cpp -lgsl -lz -ldl -llapack -lblas -lcblas -lblas <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/math/plumed/work/.buildlink/include -fPIC -Wall -pedantic -std=c++11 -L/home/pbulk/build/math/plumed/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib conftest.cpp -lgsl -lz -ldl -llapack -lblas -lcblas -lblas [*] c++ -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -I/opt/pkg/include -L/opt/pkg/lib -Wl,-R/opt/pkg/lib conftest.cpp -lfftw3 -lgsl -lz -ldl -llapack -lblas -lcblas -lblas <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/math/plumed/work/.buildlink/include -fPIC -Wall -pedantic -std=c++11 -L/home/pbulk/build/math/plumed/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib conftest.cpp -lfftw3 -lgsl -lz -ldl -llapack -lblas -lcblas -lblas [*] c++ -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -I/opt/pkg/include -L/opt/pkg/lib -Wl,-R/opt/pkg/lib conftest.cpp -lfftw3 -lgsl -lz -ldl -llapack -lblas -lcblas -lblas <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/math/plumed/work/.buildlink/include -fPIC -Wall -pedantic -std=c++11 -L/home/pbulk/build/math/plumed/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib conftest.cpp -lfftw3 -lgsl -lz -ldl -llapack -lblas -lcblas -lblas [*] c++ --print-prog-name=ld <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 --print-prog-name=ld -I/home/pbulk/build/math/plumed/work/.buildlink/include [*] c++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -c conftest-main.cpp <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/math/plumed/work/.buildlink/include -fPIC -Wall -pedantic -std=c++11 -c conftest-main.cpp [*] c++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -c conftest-f.cpp <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/math/plumed/work/.buildlink/include -fPIC -Wall -pedantic -std=c++11 -c conftest-f.cpp [*] c++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -c conftest-g.cpp <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/math/plumed/work/.buildlink/include -fPIC -Wall -pedantic -std=c++11 -c conftest-g.cpp [*] c++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -o conftest.exe conftest-main.o conftest-both.o <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/math/plumed/work/.buildlink/include -fPIC -Wall -pedantic -std=c++11 -o conftest.exe conftest-main.o conftest-both.o [*] c++ --print-prog-name=ar <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 --print-prog-name=ar -I/home/pbulk/build/math/plumed/work/.buildlink/include [*] c++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -c conftest-main.cpp <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/math/plumed/work/.buildlink/include -fPIC -Wall -pedantic -std=c++11 -c conftest-main.cpp [*] c++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -c conftest-f.cpp <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/math/plumed/work/.buildlink/include -fPIC -Wall -pedantic -std=c++11 -c conftest-f.cpp [*] c++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -c conftest-g.cpp <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/math/plumed/work/.buildlink/include -fPIC -Wall -pedantic -std=c++11 -c conftest-g.cpp [*] c++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -o conftest.exe conftest-main.o conftest-both.a <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/math/plumed/work/.buildlink/include -fPIC -Wall -pedantic -std=c++11 -o conftest.exe conftest-main.o conftest-both.a [*] c++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -c conftest-main.cpp <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/math/plumed/work/.buildlink/include -fPIC -Wall -pedantic -std=c++11 -c conftest-main.cpp [*] c++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -c conftest-f.cpp <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/math/plumed/work/.buildlink/include -fPIC -Wall -pedantic -std=c++11 -c conftest-f.cpp [*] c++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -c conftest-g.cpp <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/math/plumed/work/.buildlink/include -fPIC -Wall -pedantic -std=c++11 -c conftest-g.cpp [*] c++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -o conftest.exe conftest-main.o conftest-both.a <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/math/plumed/work/.buildlink/include -fPIC -Wall -pedantic -std=c++11 -o conftest.exe conftest-main.o conftest-both.a [*] cc -c conftest-main.c <.> /home/pbulk/build/math/plumed/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c conftest-main.c -gdwarf-2 -I/home/pbulk/build/math/plumed/work/.buildlink/include [*] c++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -c conftest.cpp <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/math/plumed/work/.buildlink/include -fPIC -Wall -pedantic -std=c++11 -c conftest.cpp [*] cc conftest.o conftest-main.o -L/opt/pkg/lib -Wl,-R/opt/pkg/lib -lfftw3 -lgsl -lz -ldl -llapack -lblas -lcblas -lblas -o conftest.exe <.> /home/pbulk/build/math/plumed/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 conftest.o conftest-main.o -L/home/pbulk/build/math/plumed/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib -lfftw3 -lgsl -lz -ldl -llapack -lblas -lcblas -lblas -o conftest.exe -gdwarf-2 -I/home/pbulk/build/math/plumed/work/.buildlink/include [*] cc conftest.o conftest-main.o -L/opt/pkg/lib -Wl,-R/opt/pkg/lib -lstdc++ -lfftw3 -lgsl -lz -ldl -llapack -lblas -lcblas -lblas -o conftest.exe <.> /home/pbulk/build/math/plumed/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 conftest.o conftest-main.o -L/home/pbulk/build/math/plumed/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib -lstdc++ -lfftw3 -lgsl -lz -ldl -llapack -lblas -lcblas -lblas -o conftest.exe -gdwarf-2 -I/home/pbulk/build/math/plumed/work/.buildlink/include [*] f77 -c conftest-main.f90 <.> /home/pbulk/build/math/plumed/work/.gcc/bin/gfortran -m64 -fstack-protector-strong -c conftest-main.f90 [*] c++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -c conftest.cpp <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/math/plumed/work/.buildlink/include -fPIC -Wall -pedantic -std=c++11 -c conftest.cpp [*] f77 conftest.o conftest-main.o -L/opt/pkg/lib -Wl,-R/opt/pkg/lib -lstdc++ -lfftw3 -lgsl -lz -ldl -llapack -lblas -lcblas -lblas -o conftest.exe <.> /home/pbulk/build/math/plumed/work/.gcc/bin/gfortran -m64 -fstack-protector-strong conftest.o conftest-main.o -L/home/pbulk/build/math/plumed/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib -lstdc++ -lfftw3 -lgsl -lz -ldl -llapack -lblas -lcblas -lblas -o conftest.exe [*] /home/pbulk/build/math/plumed/work/.tools/bin/pkg-config --variable=prefix bash-completion <.> set args --variable=prefix bash-completion; shift; PKG_CONFIG_LIBDIR=/home/pbulk/build/math/plumed/work/.buildlink/lib/amd64/pkgconfig:/home/pbulk/build/math/plumed/work/.buildlink/lib/pkgconfig:/home/pbulk/build/math/plumed/work/.buildlink/share/pkgconfig false "$@" [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir conf354412.dir <.> /usr/bin/mkdir -p conf354412.dir [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p . <.> /usr/bin/mkdir -p -p . [*] /home/pbulk/build/math/plumed/work/.tools/bin/echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/blas <.> echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/blas [*] /home/pbulk/build/math/plumed/work/.tools/bin/echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/analysis <.> echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/analysis [*] /home/pbulk/build/math/plumed/work/.tools/bin/echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/bias <.> echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/bias [*] /home/pbulk/build/math/plumed/work/.tools/bin/echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/asmjit <.> echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/asmjit [*] /home/pbulk/build/math/plumed/work/.tools/bin/echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/cltools <.> echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/cltools [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p core <.> /usr/bin/mkdir -p -p core [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p core <.> /usr/bin/mkdir -p -p core [*] /home/pbulk/build/math/plumed/work/.tools/bin/echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/colvar <.> echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/colvar [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p core <.> /usr/bin/mkdir -p -p core [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p config <.> /usr/bin/mkdir -p -p config [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p tools <.> /usr/bin/mkdir -p -p tools [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p tools <.> /usr/bin/mkdir -p -p tools [*] /home/pbulk/build/math/plumed/work/.tools/bin/echo Nothing to do in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/config <.> echo Nothing to do in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/config [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p tools <.> /usr/bin/mkdir -p -p tools [*] /home/pbulk/build/math/plumed/work/.tools/bin/echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/core <.> echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/core [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p reference <.> /usr/bin/mkdir -p -p reference [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p molfile <.> /usr/bin/mkdir -p -p molfile [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p core <.> /usr/bin/mkdir -p -p core [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p config <.> /usr/bin/mkdir -p -p config [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p xdrfile <.> /usr/bin/mkdir -p -p xdrfile [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p vesselbase <.> /usr/bin/mkdir -p -p vesselbase [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p reference <.> /usr/bin/mkdir -p -p reference [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p tools <.> /usr/bin/mkdir -p -p tools [*] /home/pbulk/build/math/plumed/work/.tools/bin/echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/function <.> echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/function [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p gridtools <.> /usr/bin/mkdir -p -p gridtools [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p tools <.> /usr/bin/mkdir -p -p tools [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p core <.> /usr/bin/mkdir -p -p core [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p multicolvar <.> /usr/bin/mkdir -p -p multicolvar [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p lepton <.> /usr/bin/mkdir -p -p lepton [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p reference <.> /usr/bin/mkdir -p -p reference [*] /home/pbulk/build/math/plumed/work/.tools/bin/echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/gridtools <.> echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/gridtools [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p bias <.> /usr/bin/mkdir -p -p bias [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p tools <.> /usr/bin/mkdir -p -p tools [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p core <.> /usr/bin/mkdir -p -p core [*] /home/pbulk/build/math/plumed/work/.tools/bin/echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/isdb <.> echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/isdb [*] /home/pbulk/build/math/plumed/work/.tools/bin/echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/generic <.> echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/generic [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p tools <.> /usr/bin/mkdir -p -p tools [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p lepton <.> /usr/bin/mkdir -p -p lepton [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p bias <.> /usr/bin/mkdir -p -p bias [*] /home/pbulk/build/math/plumed/work/.tools/bin/echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/lapack <.> echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/lapack [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p core <.> /usr/bin/mkdir -p -p core [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p colvar <.> /usr/bin/mkdir -p -p colvar [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p vesselbase <.> /usr/bin/mkdir -p -p vesselbase [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p blas <.> /usr/bin/mkdir -p -p blas [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p tools <.> /usr/bin/mkdir -p -p tools [*] /home/pbulk/build/math/plumed/work/.tools/bin/echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/lepton <.> echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/lepton [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p core <.> /usr/bin/mkdir -p -p core [*] /home/pbulk/build/math/plumed/work/.tools/bin/echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/main <.> echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/main [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p asmjit <.> /usr/bin/mkdir -p -p asmjit [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p xdrfile <.> /usr/bin/mkdir -p -p xdrfile [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p wrapper <.> /usr/bin/mkdir -p -p wrapper [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p reference <.> /usr/bin/mkdir -p -p reference [*] /home/pbulk/build/math/plumed/work/.tools/bin/echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/molfile <.> echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/molfile [*] /home/pbulk/build/math/plumed/work/.tools/bin/echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/mapping <.> echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/mapping [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p tools <.> /usr/bin/mkdir -p -p tools [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p core <.> /usr/bin/mkdir -p -p core [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p function <.> /usr/bin/mkdir -p -p function [*] /home/pbulk/build/math/plumed/work/.tools/bin/echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/reference <.> echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/reference [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p tools <.> /usr/bin/mkdir -p -p tools [*] /home/pbulk/build/math/plumed/work/.tools/bin/echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/secondarystructure <.> echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/secondarystructure [*] /home/pbulk/build/math/plumed/work/.tools/bin/echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/multicolvar <.> echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/multicolvar [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p core <.> /usr/bin/mkdir -p -p core [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p core <.> /usr/bin/mkdir -p -p core [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p cltools <.> /usr/bin/mkdir -p -p cltools [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p tools <.> /usr/bin/mkdir -p -p tools [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p tools <.> /usr/bin/mkdir -p -p tools [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p reference <.> /usr/bin/mkdir -p -p reference [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p core <.> /usr/bin/mkdir -p -p core [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p reference <.> /usr/bin/mkdir -p -p reference [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p vesselbase <.> /usr/bin/mkdir -p -p vesselbase [*] /home/pbulk/build/math/plumed/work/.tools/bin/echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/setup <.> echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/setup [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p tools <.> /usr/bin/mkdir -p -p tools [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p vesselbase <.> /usr/bin/mkdir -p -p vesselbase [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p core <.> /usr/bin/mkdir -p -p core [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p vesselbase <.> /usr/bin/mkdir -p -p vesselbase [*] /home/pbulk/build/math/plumed/work/.tools/bin/echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/vatom <.> echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/vatom [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p tools <.> /usr/bin/mkdir -p -p tools [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p core <.> /usr/bin/mkdir -p -p core [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p gridtools <.> /usr/bin/mkdir -p -p gridtools [*] /home/pbulk/build/math/plumed/work/.tools/bin/echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/tools <.> echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/tools [*] /home/pbulk/build/math/plumed/work/.tools/bin/echo Nothing to do in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/wrapper <.> echo Nothing to do in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/wrapper [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p tools <.> /usr/bin/mkdir -p -p tools [*] /home/pbulk/build/math/plumed/work/.tools/bin/echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/xdrfile <.> echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/xdrfile [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p core <.> /usr/bin/mkdir -p -p core [*] /home/pbulk/build/math/plumed/work/.tools/bin/echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/vesselbase <.> echo Verify modules and create links in /home/pbulk/build/math/plumed/work/plumed-2.8.0/src/vesselbase [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p lapack <.> /usr/bin/mkdir -p -p lapack [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p core <.> /usr/bin/mkdir -p -p core [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p lepton <.> /usr/bin/mkdir -p -p lepton [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p tools <.> /usr/bin/mkdir -p -p tools [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p bias <.> /usr/bin/mkdir -p -p bias [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir -p analysis <.> /usr/bin/mkdir -p -p analysis [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir deps <.> /usr/bin/mkdir -p deps [*] c++ -c -MM -MFblas.d -I/opt/pkg/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -fopenmp blas.cpp <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -MM -MFblas.d -I/home/pbulk/build/math/plumed/work/.buildlink/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fPIC -Wall -pedantic -std=c++11 -fopenmp blas.cpp [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir deps <.> /usr/bin/mkdir -p deps [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir deps <.> /usr/bin/mkdir -p deps [*] /home/pbulk/build/math/plumed/work/.tools/bin/mkdir deps <.> /usr/bin/mkdir -p deps [*] c++ -c -MM -MFABMD.d -I/opt/pkg/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -fopenmp ABMD.cpp <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -MM -MFABMD.d -I/home/pbulk/build/math/plumed/work/.buildlink/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fPIC -Wall -pedantic -std=c++11 -fopenmp ABMD.cpp [*] c++ -c -MM -MFAnalysisBase.d -I/opt/pkg/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -fopenmp AnalysisBase.cpp <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -MM -MFAnalysisBase.d -I/home/pbulk/build/math/plumed/work/.buildlink/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fPIC -Wall -pedantic -std=c++11 -fopenmp AnalysisBase.cpp [*] c++ -c -MM -MFarch.d -I/opt/pkg/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -fopenmp arch.cpp <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -MM -MFarch.d -I/home/pbulk/build/math/plumed/work/.buildlink/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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Driver.cpp [*] c++ -c -MM -MFcodebuilder.d -I/opt/pkg/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -fopenmp codebuilder.cpp <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -MM -MFcodebuilder.d -I/home/pbulk/build/math/plumed/work/.buildlink/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fPIC -Wall -pedantic -std=c++11 -fopenmp codebuilder.cpp [*] c++ -c -I/opt/pkg/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic 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cpuinfo.o [*] c++ -c -I/opt/pkg/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -fopenmp AverageVessel.cpp -o AverageVessel.o <.> 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-D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fPIC -Wall -pedantic -std=c++11 -fopenmp utils.cpp -o utils.o [*] c++ -c -I/opt/pkg/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 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2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fPIC -Wall -pedantic -std=c++11 -fopenmp FarthestPointSampling.cpp -o FarthestPointSampling.o [*] c++ -c -MM -MFvmem.d -I/opt/pkg/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' 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'-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fPIC -Wall -pedantic -std=c++11 -fopenmp vmem.cpp [*] c++ -c -I/opt/pkg/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -fopenmp vmem.cpp -o vmem.o <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -I/home/pbulk/build/math/plumed/work/.buildlink/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fPIC -Wall -pedantic -std=c++11 -fopenmp vmem.cpp -o vmem.o [*] c++ -c -MM -MFGenExample.d -I/opt/pkg/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -fopenmp GenExample.cpp <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -MM -MFGenExample.d -I/home/pbulk/build/math/plumed/work/.buildlink/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fPIC -Wall -pedantic -std=c++11 -fopenmp GenExample.cpp [*] c++ -c -I/opt/pkg/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -fopenmp GenExample.cpp -o GenExample.o <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -I/home/pbulk/build/math/plumed/work/.buildlink/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fPIC -Wall -pedantic -std=c++11 -fopenmp GenExample.cpp -o GenExample.o [*] c++ -c -MM -MFx86assembler.d -I/opt/pkg/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -fopenmp x86assembler.cpp <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -MM -MFx86assembler.d -I/home/pbulk/build/math/plumed/work/.buildlink/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fPIC -Wall -pedantic -std=c++11 -fopenmp x86assembler.cpp [*] c++ -c -I/opt/pkg/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -fopenmp x86assembler.cpp -o x86assembler.o <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -I/home/pbulk/build/math/plumed/work/.buildlink/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fPIC -Wall -pedantic -std=c++11 -fopenmp x86assembler.cpp -o x86assembler.o [*] c++ -c -MM -MFMetaD.d -I/opt/pkg/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 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-fno-aggressive-loop-optimizations -fPIC -Wall -pedantic -std=c++11 -fopenmp MetaD.cpp [*] c++ -c -I/opt/pkg/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -fopenmp MetaD.cpp -o MetaD.o <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -I/home/pbulk/build/math/plumed/work/.buildlink/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fPIC -Wall -pedantic -std=c++11 -fopenmp MetaD.cpp -o MetaD.o [*] c++ -c -MM -MFHistogram.d -I/opt/pkg/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -fopenmp Histogram.cpp <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -MM -MFHistogram.d -I/home/pbulk/build/math/plumed/work/.buildlink/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fPIC -Wall -pedantic -std=c++11 -fopenmp Histogram.cpp [*] c++ -c -I/opt/pkg/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -fopenmp Histogram.cpp -o Histogram.o <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -I/home/pbulk/build/math/plumed/work/.buildlink/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fPIC -Wall -pedantic -std=c++11 -fopenmp Histogram.cpp -o Histogram.o [*] c++ -c -MM -MFGenTemplate.d -I/opt/pkg/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 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-DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -fopenmp Completion.cpp -o Completion.o <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -I/home/pbulk/build/math/plumed/work/.buildlink/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' 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2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fPIC -Wall -pedantic -std=c++11 -fopenmp x86internal.cpp -o x86internal.o [*] c++ -c -MM -MFReweightBase.d -I/opt/pkg/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -fopenmp ReweightBase.cpp <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -MM -MFReweightBase.d -I/home/pbulk/build/math/plumed/work/.buildlink/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fPIC -Wall -pedantic -std=c++11 -fopenmp ReweightBase.cpp [*] c++ -c -I/opt/pkg/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -fopenmp ReweightBase.cpp -o ReweightBase.o <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -I/home/pbulk/build/math/plumed/work/.buildlink/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fPIC -Wall -pedantic -std=c++11 -fopenmp ReweightBase.cpp -o ReweightBase.o [*] c++ -c -MM -MFReweightBias.d -I/opt/pkg/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -fopenmp ReweightBias.cpp <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -MM -MFReweightBias.d -I/home/pbulk/build/math/plumed/work/.buildlink/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fPIC -Wall -pedantic -std=c++11 -fopenmp ReweightBias.cpp [*] c++ -c -I/opt/pkg/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -fopenmp ReweightBias.cpp -o ReweightBias.o <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -I/home/pbulk/build/math/plumed/work/.buildlink/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fPIC -Wall -pedantic -std=c++11 -fopenmp ReweightBias.cpp -o ReweightBias.o [*] c++ -c -MM -MFReweightMetad.d -I/opt/pkg/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -fopenmp ReweightMetad.cpp <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -MM -MFReweightMetad.d -I/home/pbulk/build/math/plumed/work/.buildlink/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fPIC -Wall -pedantic -std=c++11 -fopenmp ReweightMetad.cpp [*] c++ -c -MM -MFReweightTemperaturePressure.d -I/opt/pkg/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -fopenmp ReweightTemperaturePressure.cpp <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -MM -MFReweightTemperaturePressure.d -I/home/pbulk/build/math/plumed/work/.buildlink/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 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-D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -fopenmp ReweightMetad.cpp -o ReweightMetad.o <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -I/home/pbulk/build/math/plumed/work/.buildlink/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 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'-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -fopenmp x86operand_regs.cpp -o x86operand_regs.o <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -I/home/pbulk/build/math/plumed/work/.buildlink/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fPIC -Wall -pedantic -std=c++11 -fopenmp x86operand_regs.cpp -o x86operand_regs.o [*] c++ -c -I/opt/pkg/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -fopenmp x86regalloc.cpp -o x86regalloc.o <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -I/home/pbulk/build/math/plumed/work/.buildlink/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fPIC -Wall -pedantic -std=c++11 -fopenmp x86regalloc.cpp -o x86regalloc.o [*] c++ -c -MM -MFzone.d -I/opt/pkg/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -fopenmp zone.cpp <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -MM -MFzone.d -I/home/pbulk/build/math/plumed/work/.buildlink/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fPIC -Wall -pedantic -std=c++11 -fopenmp zone.cpp [*] c++ -c -I/opt/pkg/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -fPIC -Wall -pedantic -std=c++11 -fopenmp zone.cpp -o zone.o <.> /home/pbulk/build/math/plumed/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -I/home/pbulk/build/math/plumed/work/.buildlink/include '-DPACKAGE_NAME="PLUMED"' '-DPACKAGE_TARNAME="plumed"' '-DPACKAGE_VERSION="2"' '-DPACKAGE_STRING="PLUMED 2"' '-DPACKAGE_BUGREPORT=""' '-DPACKAGE_URL=""' -D__PLUMED_LIBCXX11=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -D__PLUMED_HAS_EXTERNAL_BLAS=1 -D__PLUMED_HAS_EXTERNAL_LAPACK=1 -D__PLUMED_HAS_MOLFILE_PLUGINS=1 -D__PLUMED_HAS_ASMJIT=1 -D__PLUMED_HAS_CREGEX=1 -D__PLUMED_HAS_DLOPEN=1 -D__PLUMED_HAS_RTLD_DEFAULT=1 -D__PLUMED_HAS_CHDIR=1 -D__PLUMED_HAS_SUBPROCESS=1 -D__PLUMED_HAS_GETCWD=1 -D__PLUMED_HAS_POPEN=1 -D__PLUMED_HAS_EXECINFO=1 -D__PLUMED_HAS_ZLIB=1 -D__PLUMED_HAS_GSL=1 -D__PLUMED_HAS_FFTW=1 -DNDEBUG=1 -D_REENTRANT=1 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -fPIC -Wall -pedantic -std=c++11 -fopenmp zone.cpp -o zone.o