[*] /home/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir conf526774.dir
<.> /usr/bin/mkdir -p conf526774.dir
[*] /home/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir -p .
<.> /usr/bin/mkdir -p -p .
[*] /home/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir --version
<.> /usr/bin/mkdir -p --version
[*] /home/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir .tst
<.> /usr/bin/mkdir -p .tst
[*] /home/pbulk/build/biology/plinkseq/work/.tools/bin/echo done
<.> echo  done
[*] cc --version
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 --version -gdwarf-2 -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] cc -v
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -v -gdwarf-2 -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] cc -V
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -V -gdwarf-2 -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] cc -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include -lsocket -lnsl -L/opt/pkg/lib -Wl,-R/opt/pkg/lib conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -lsocket -lnsl -L/home/pbulk/build/biology/plinkseq/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib conftest.c -gdwarf-2
[*] cc -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include -lsocket -lnsl -L/opt/pkg/lib -Wl,-R/opt/pkg/lib conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -lsocket -lnsl -L/home/pbulk/build/biology/plinkseq/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib conftest.c -gdwarf-2
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -gdwarf-2
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -gdwarf-2
[*] cc -c -g -I/opt/pkg/include conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -g -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -gdwarf-2
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -gdwarf-2
[*] /home/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir conftest.dir
<.> /usr/bin/mkdir -p conftest.dir
[*] /home/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir sub
<.> /usr/bin/mkdir -p sub
[*] cc -MT sub/conftest.o -MD -MP -MF sub/conftest.TPo -c -o sub/conftest.o sub/conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -MT sub/conftest.o -MD -MP -MF sub/conftest.TPo -c -o sub/conftest.o sub/conftest.c -gdwarf-2 -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] cc -print-prog-name=ld
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -print-prog-name=ld -gdwarf-2 -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -gdwarf-2
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -gdwarf-2
[*] cc -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include -lsocket -lnsl -L/opt/pkg/lib -Wl,-R/opt/pkg/lib conftest.c conftstm.o
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -lsocket -lnsl -L/home/pbulk/build/biology/plinkseq/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib conftest.c conftstm.o -gdwarf-2
[*] cc -E -I/opt/pkg/include conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -E -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -gdwarf-2
[*] cc -E -I/opt/pkg/include conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -E -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -gdwarf-2
[*] cc -E -I/opt/pkg/include conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -E -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -gdwarf-2
[*] cc -E -I/opt/pkg/include conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -E -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -gdwarf-2
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -gdwarf-2
[*] cc -E -I/opt/pkg/include conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -E -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -gdwarf-2
[*] cc -E -I/opt/pkg/include conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -E -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -gdwarf-2
[*] cc -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include -lsocket -lnsl -L/opt/pkg/lib -Wl,-R/opt/pkg/lib conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -lsocket -lnsl -L/home/pbulk/build/biology/plinkseq/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib conftest.c -gdwarf-2
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -gdwarf-2
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -gdwarf-2
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -gdwarf-2
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -gdwarf-2
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -gdwarf-2
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -gdwarf-2
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -gdwarf-2
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -gdwarf-2
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -gdwarf-2
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -gdwarf-2
[*] /home/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir .libs
<.> /usr/bin/mkdir -p .libs
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -gdwarf-2
[*] cc -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include -lsocket -lnsl -L/opt/pkg/lib -Wl,-R/opt/pkg/lib conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -lsocket -lnsl -L/home/pbulk/build/biology/plinkseq/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib conftest.c -gdwarf-2
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include -fno-rtti -fno-exceptions conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -fno-rtti -fno-exceptions conftest.c -gdwarf-2
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include -fPIC -DPIC -DPIC conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -fPIC -DPIC -DPIC conftest.c -gdwarf-2
[*] cc -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include -lsocket -lnsl -L/opt/pkg/lib -Wl,-R/opt/pkg/lib -static conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -lsocket -lnsl -L/home/pbulk/build/biology/plinkseq/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib -static conftest.c -gdwarf-2
[*] /home/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir conftest
<.> /usr/bin/mkdir -p conftest
[*] /home/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir out
<.> /usr/bin/mkdir -p out
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include -o out/conftest2.o conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -o out/conftest2.o conftest.c -gdwarf-2
[*] cc -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.c -gdwarf-2
[*] cc -shared -Wl,-z -Wl,text -Wl,-h -Wl,conftest -o conftest conftest.o -v
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -shared -Wl,-z -Wl,text -Wl,-h -Wl,conftest -o conftest conftest.o -v -gdwarf-2 -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] cc -print-search-dirs
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -print-search-dirs -gdwarf-2 -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] cc -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -lsocket -lnsl -L/opt/pkg/lib -Wl,-R/opt/pkg/lib -print-multi-os-directory
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -lsocket -lnsl -L/home/pbulk/build/biology/plinkseq/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib -print-multi-os-directory -gdwarf-2
[*] /home/pbulk/build/biology/plinkseq/work/.tools/bin/strip -V
<.> set args -V; shift; exit 0
[*] cc -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include -lsocket -lnsl -L/opt/pkg/lib -Wl,-R/opt/pkg/lib conftest.c -lprotobuf
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -lsocket -lnsl -L/home/pbulk/build/biology/plinkseq/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib conftest.c -lprotobuf -gdwarf-2
[*] c++ --version
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 --version -std=c++17 -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] c++ -v
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -v -std=c++17 -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] c++ -V
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -V -std=c++17 -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] c++ -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include conftest.cpp
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.cpp -std=c++17
[*] c++ -c -g -I/opt/pkg/include conftest.cpp
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -c -g -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include conftest.cpp -std=c++17
[*] /home/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir conftest.dir
<.> /usr/bin/mkdir -p conftest.dir
[*] /home/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir sub
<.> /usr/bin/mkdir -p sub
[*] c++ -MT sub/conftest.o -MD -MP -MF sub/conftest.TPo -c -o sub/conftest.o sub/conftest.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -MT sub/conftest.o -MD -MP -MF sub/conftest.TPo -c -o sub/conftest.o sub/conftest.c -std=c++17 -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] c++ --version
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 --version -std=c++17 -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] c++ -v
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -v -std=c++17 -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] c++ -V
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[*] c++ -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include -lsocket -lnsl -L/opt/pkg/lib -Wl,-R/opt/pkg/lib conftest.cpp
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[*] c++ -print-prog-name=ld
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[*] c++ -o conftest -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -I/opt/pkg/include -lsocket -lnsl -L/opt/pkg/lib -Wl,-R/opt/pkg/lib -static conftest.cpp
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<.> /opt/pkg/bin/libtool --tag=CXX --mode=link g++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -lsocket -lnsl -L/home/pbulk/build/biology/plinkseq/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib -o libplinkseq.la -rpath /opt/pkg/lib libplinkseq_la-eval.lo libplinkseq_la-token.lo libplinkseq_la-vcfz.lo libplinkseq_la-gstore.lo libplinkseq_la-globals.lo libplinkseq_la-variant.lo libplinkseq_la-svar.lo libplinkseq_la-genotype.lo libplinkseq_la-meta.lo libplinkseq_la-regions.lo libplinkseq_la-filemap.lo libplinkseq_la-vcf.lo libplinkseq_la-bcf.lo libplinkseq_la-zfstream.lo libplinkseq_la-sqlwrap.lo libplinkseq_la-helper.lo libplinkseq_la-locdb.lo libplinkseq_la-vardb.lo libplinkseq_la-segments.lo libplinkseq_la-varfunc.lo libplinkseq_la-variant.pb.lo libplinkseq_la-refdb.lo libplinkseq_la-seqdb.lo libplinkseq_la-annot.lo libplinkseq_la-inddb.lo libplinkseq_la-mask.lo libplinkseq_la-reffuncs.lo libplinkseq_la-vgroup.lo libplinkseq_la-allele.lo libplinkseq_la-individual.lo libplinkseq_la-indmap.lo libplinkseq_la-phmap.lo libplinkseq_la-permute.lo libplinkseq_la-crandom.lo libplinkseq_la-defs.lo libplinkseq_la-em.lo libplinkseq_la-bed.lo libplinkseq_la-varmeta.lo libplinkseq_la-pp.lo libplinkseq_la-pp.pb.lo libplinkseq_la-statistics.lo libplinkseq_la-dcdflib.lo libplinkseq_la-bgzf.lo libplinkseq_la-fisher.lo libplinkseq_la-glm.lo libplinkseq_la-matrix.lo libplinkseq_la-iterate.lo libplinkseq_la-vcfiterate.lo libplinkseq_la-netdb.lo libplinkseq_la-sqlite3.lo -lz -lprotobuf
[*] c++ -shared -fPIC -DPIC .libs/libplinkseq_la-eval.o .libs/libplinkseq_la-token.o .libs/libplinkseq_la-vcfz.o .libs/libplinkseq_la-gstore.o .libs/libplinkseq_la-globals.o .libs/libplinkseq_la-variant.o .libs/libplinkseq_la-svar.o .libs/libplinkseq_la-genotype.o .libs/libplinkseq_la-meta.o .libs/libplinkseq_la-regions.o .libs/libplinkseq_la-filemap.o .libs/libplinkseq_la-vcf.o .libs/libplinkseq_la-bcf.o .libs/libplinkseq_la-zfstream.o .libs/libplinkseq_la-sqlwrap.o .libs/libplinkseq_la-helper.o .libs/libplinkseq_la-locdb.o .libs/libplinkseq_la-vardb.o .libs/libplinkseq_la-segments.o .libs/libplinkseq_la-varfunc.o .libs/libplinkseq_la-variant.pb.o .libs/libplinkseq_la-refdb.o .libs/libplinkseq_la-seqdb.o .libs/libplinkseq_la-annot.o .libs/libplinkseq_la-inddb.o .libs/libplinkseq_la-mask.o .libs/libplinkseq_la-reffuncs.o .libs/libplinkseq_la-vgroup.o .libs/libplinkseq_la-allele.o .libs/libplinkseq_la-individual.o .libs/libplinkseq_la-indmap.o .libs/libplinkseq_la-phmap.o .libs/libplinkseq_la-permute.o .libs/libplinkseq_la-crandom.o .libs/libplinkseq_la-defs.o .libs/libplinkseq_la-em.o .libs/libplinkseq_la-bed.o .libs/libplinkseq_la-varmeta.o .libs/libplinkseq_la-pp.o .libs/libplinkseq_la-pp.pb.o .libs/libplinkseq_la-statistics.o .libs/libplinkseq_la-dcdflib.o .libs/libplinkseq_la-bgzf.o .libs/libplinkseq_la-fisher.o .libs/libplinkseq_la-glm.o .libs/libplinkseq_la-matrix.o .libs/libplinkseq_la-iterate.o .libs/libplinkseq_la-vcfiterate.o .libs/libplinkseq_la-netdb.o .libs/libplinkseq_la-sqlite3.o -Wl,-R -Wl,/home/pbulk/build/biology/plinkseq/work/.buildlink/lib -Wl,-R -Wl,/home/pbulk/build/biology/plinkseq/work/.buildlink/lib -lsocket -lnsl -L/home/pbulk/build/biology/plinkseq/work/.buildlink/lib /home/pbulk/build/biology/plinkseq/work/.buildlink/lib/libz.so -lprotobuf -O2 -msave-args -Wl,-rpath -Wl,/opt/pkg/lib -Wl,-h -Wl,libplinkseq.so.0 -o .libs/libplinkseq.so.0.0.0
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -shared -fPIC -DPIC .libs/libplinkseq_la-eval.o .libs/libplinkseq_la-token.o .libs/libplinkseq_la-vcfz.o .libs/libplinkseq_la-gstore.o .libs/libplinkseq_la-globals.o .libs/libplinkseq_la-variant.o .libs/libplinkseq_la-svar.o .libs/libplinkseq_la-genotype.o .libs/libplinkseq_la-meta.o .libs/libplinkseq_la-regions.o .libs/libplinkseq_la-filemap.o .libs/libplinkseq_la-vcf.o .libs/libplinkseq_la-bcf.o .libs/libplinkseq_la-zfstream.o .libs/libplinkseq_la-sqlwrap.o .libs/libplinkseq_la-helper.o .libs/libplinkseq_la-locdb.o .libs/libplinkseq_la-vardb.o .libs/libplinkseq_la-segments.o .libs/libplinkseq_la-varfunc.o .libs/libplinkseq_la-variant.pb.o .libs/libplinkseq_la-refdb.o .libs/libplinkseq_la-seqdb.o .libs/libplinkseq_la-annot.o .libs/libplinkseq_la-inddb.o .libs/libplinkseq_la-mask.o .libs/libplinkseq_la-reffuncs.o .libs/libplinkseq_la-vgroup.o .libs/libplinkseq_la-allele.o .libs/libplinkseq_la-individual.o .libs/libplinkseq_la-indmap.o .libs/libplinkseq_la-phmap.o .libs/libplinkseq_la-permute.o .libs/libplinkseq_la-crandom.o .libs/libplinkseq_la-defs.o .libs/libplinkseq_la-em.o .libs/libplinkseq_la-bed.o .libs/libplinkseq_la-varmeta.o .libs/libplinkseq_la-pp.o .libs/libplinkseq_la-pp.pb.o .libs/libplinkseq_la-statistics.o .libs/libplinkseq_la-dcdflib.o .libs/libplinkseq_la-bgzf.o .libs/libplinkseq_la-fisher.o .libs/libplinkseq_la-glm.o .libs/libplinkseq_la-matrix.o .libs/libplinkseq_la-iterate.o .libs/libplinkseq_la-vcfiterate.o .libs/libplinkseq_la-netdb.o .libs/libplinkseq_la-sqlite3.o -Wl,-rpath,/opt/pkg/lib -Wl,-rpath,/opt/pkg/lib -lsocket -lnsl -L/home/pbulk/build/biology/plinkseq/work/.buildlink/lib -lz -lprotobuf -O2 -msave-args -Wl,-rpath,/opt/pkg/lib -Wl,-h -Wl,libplinkseq.so.0 -o .libs/libplinkseq.so.0.0.0 -std=c++17 -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-util.o -MD -MP -MF .deps/pseq-util.Tpo -c -o pseq-util.o util.cpp
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT pseq-util.o -MD -MP -MF .deps/pseq-util.Tpo -c -o pseq-util.o util.cpp -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-main.o -MD -MP -MF .deps/pseq-main.Tpo -c -o pseq-main.o main.cpp
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT pseq-main.o -MD -MP -MF .deps/pseq-main.Tpo -c -o pseq-main.o main.cpp -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-func.o -MD -MP -MF .deps/pseq-func.Tpo -c -o pseq-func.o func.cpp
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT pseq-func.o -MD -MP -MF .deps/pseq-func.Tpo -c -o pseq-func.o func.cpp -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-ibs.o -MD -MP -MF .deps/pseq-ibs.Tpo -c -o pseq-ibs.o ibs.cpp
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT pseq-ibs.o -MD -MP -MF .deps/pseq-ibs.Tpo -c -o pseq-ibs.o ibs.cpp -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-summaries.o -MD -MP -MF .deps/pseq-summaries.Tpo -c -o pseq-summaries.o summaries.cpp
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT pseq-summaries.o -MD -MP -MF .deps/pseq-summaries.Tpo -c -o pseq-summaries.o summaries.cpp -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-views.o -MD -MP -MF .deps/pseq-views.Tpo -c -o pseq-views.o views.cpp
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT pseq-views.o -MD -MP -MF .deps/pseq-views.Tpo -c -o pseq-views.o views.cpp -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-assoc.o -MD -MP -MF .deps/pseq-assoc.Tpo -c -o pseq-assoc.o assoc.cpp
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT pseq-assoc.o -MD -MP -MF .deps/pseq-assoc.Tpo -c -o pseq-assoc.o assoc.cpp -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-genic.o -MD -MP -MF .deps/pseq-genic.Tpo -c -o pseq-genic.o genic.cpp
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT pseq-genic.o -MD -MP -MF .deps/pseq-genic.Tpo -c -o pseq-genic.o genic.cpp -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-compare.o -MD -MP -MF .deps/pseq-compare.Tpo -c -o pseq-compare.o compare.cpp
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT pseq-compare.o -MD -MP -MF .deps/pseq-compare.Tpo -c -o pseq-compare.o compare.cpp -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-ibd.o -MD -MP -MF .deps/pseq-ibd.Tpo -c -o pseq-ibd.o ibd.cpp
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT pseq-ibd.o -MD -MP -MF .deps/pseq-ibd.Tpo -c -o pseq-ibd.o ibd.cpp -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-loaders.o -MD -MP -MF .deps/pseq-loaders.Tpo -c -o pseq-loaders.o loaders.cpp
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT pseq-loaders.o -MD -MP -MF .deps/pseq-loaders.Tpo -c -o pseq-loaders.o loaders.cpp -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-clusters.o -MD -MP -MF .deps/pseq-clusters.Tpo -c -o pseq-clusters.o clusters.cpp
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT pseq-clusters.o -MD -MP -MF .deps/pseq-clusters.Tpo -c -o pseq-clusters.o clusters.cpp -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-varfunc.o -MD -MP -MF .deps/pseq-varfunc.Tpo -c -o pseq-varfunc.o varfunc.cpp
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT pseq-varfunc.o -MD -MP -MF .deps/pseq-varfunc.Tpo -c -o pseq-varfunc.o varfunc.cpp -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-glm-tests.o -MD -MP -MF .deps/pseq-glm-tests.Tpo -c -o pseq-glm-tests.o glm-tests.cpp
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT pseq-glm-tests.o -MD -MP -MF .deps/pseq-glm-tests.Tpo -c -o pseq-glm-tests.o glm-tests.cpp -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-stepup.o -MD -MP -MF .deps/pseq-stepup.Tpo -c -o pseq-stepup.o stepup.cpp
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT pseq-stepup.o -MD -MP -MF .deps/pseq-stepup.Tpo -c -o pseq-stepup.o stepup.cpp -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-kbac.o -MD -MP -MF .deps/pseq-kbac.Tpo -c -o pseq-kbac.o kbac.cpp
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT pseq-kbac.o -MD -MP -MF .deps/pseq-kbac.Tpo -c -o pseq-kbac.o kbac.cpp -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-netassoc.o -MD -MP -MF .deps/pseq-netassoc.Tpo -c -o pseq-netassoc.o netassoc.cpp
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT pseq-netassoc.o -MD -MP -MF .deps/pseq-netassoc.Tpo -c -o pseq-netassoc.o netassoc.cpp -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-gseq.o -MD -MP -MF .deps/pseq-gseq.Tpo -c -o pseq-gseq.o gseq.cpp
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT pseq-gseq.o -MD -MP -MF .deps/pseq-gseq.Tpo -c -o pseq-gseq.o gseq.cpp -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pseq-extra.o -MD -MP -MF .deps/pseq-extra.Tpo -c -o pseq-extra.o extra.cpp
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT pseq-extra.o -MD -MP -MF .deps/pseq-extra.Tpo -c -o pseq-extra.o extra.cpp -std=c++17
[*] libtool --tag=CXX --mode=link g++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -lz -ldl -lsocket -lnsl -L/opt/pkg/lib -Wl,-R/opt/pkg/lib -o pseq pseq-util.o pseq-ibs.o pseq-main.o pseq-func.o pseq-summaries.o pseq-views.o pseq-assoc.o pseq-genic.o pseq-compare.o pseq-ibd.o pseq-loaders.o pseq-clusters.o pseq-varfunc.o pseq-glm-tests.o pseq-stepup.o pseq-kbac.o pseq-netassoc.o pseq-gseq.o pseq-extra.o ../lib/libplinkseq.la
<.> /opt/pkg/bin/libtool --tag=CXX --mode=link g++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -lz -lsocket -lnsl -L/home/pbulk/build/biology/plinkseq/work/.buildlink/lib -Wl,-rpath,/opt/pkg/lib -o pseq pseq-util.o pseq-ibs.o pseq-main.o pseq-func.o pseq-summaries.o pseq-views.o pseq-assoc.o pseq-genic.o pseq-compare.o pseq-ibd.o pseq-loaders.o pseq-clusters.o pseq-varfunc.o pseq-glm-tests.o pseq-stepup.o pseq-kbac.o pseq-netassoc.o pseq-gseq.o pseq-extra.o ../lib/libplinkseq.la
[*] /home/pbulk/build/biology/plinkseq/work/.tools/bin/mkdir .libs
<.> /usr/bin/mkdir -p .libs
[*] c++ -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -Wl,-rpath -Wl,/opt/pkg/lib -o .libs/pseq pseq-util.o pseq-ibs.o pseq-main.o pseq-func.o pseq-summaries.o pseq-views.o pseq-assoc.o pseq-genic.o pseq-compare.o pseq-ibd.o pseq-loaders.o pseq-clusters.o pseq-varfunc.o pseq-glm-tests.o pseq-stepup.o pseq-kbac.o pseq-netassoc.o pseq-gseq.o pseq-extra.o -L/home/pbulk/build/biology/plinkseq/work/.buildlink/lib ../lib/.libs/libplinkseq.so -lsocket -lnsl /home/pbulk/build/biology/plinkseq/work/.buildlink/lib/libz.so -lprotobuf -Wl,-R -Wl,/opt/pkg/lib -Wl,-R -Wl,/home/pbulk/build/biology/plinkseq/work/.buildlink/lib
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -Wl,-rpath,/opt/pkg/lib -o .libs/pseq pseq-util.o pseq-ibs.o pseq-main.o pseq-func.o pseq-summaries.o pseq-views.o pseq-assoc.o pseq-genic.o pseq-compare.o pseq-ibd.o pseq-loaders.o pseq-clusters.o pseq-varfunc.o pseq-glm-tests.o pseq-stepup.o pseq-kbac.o pseq-netassoc.o pseq-gseq.o pseq-extra.o -L/home/pbulk/build/biology/plinkseq/work/.buildlink/lib ../lib/.libs/libplinkseq.so -lsocket -lnsl -lz -lprotobuf -Wl,-rpath,/opt/pkg/lib -Wl,-rpath,/opt/pkg/lib -std=c++17
[*] c++ -DHAVE_CONFIG_H -I. -I.. -I../lib -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT pbrowse_cgi-psb.o -MD -MP -MF .deps/pbrowse_cgi-psb.Tpo -c -o pbrowse_cgi-psb.o psb.cpp
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/g++ -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I../lib -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT pbrowse_cgi-psb.o -MD -MP -MF .deps/pbrowse_cgi-psb.Tpo -c -o pbrowse_cgi-psb.o psb.cpp -std=c++17
[*] cc -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT mongoose-mongoose.o -MD -MP -MF .deps/mongoose-mongoose.Tpo -c -o mongoose-mongoose.o mongoose.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT mongoose-mongoose.o -MD -MP -MF .deps/mongoose-mongoose.Tpo -c -o mongoose-mongoose.o mongoose.c -gdwarf-2
[*] cc -DHAVE_CONFIG_H -I. -I.. -I/opt/pkg/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -I/opt/pkg/include -MT mongoose-main.o -MD -MP -MF .deps/mongoose-main.Tpo -c -o mongoose-main.o main.c
<.> /home/pbulk/build/biology/plinkseq/work/.gcc/bin/gcc -fcommon -m64 -fstack-protector-strong -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I. -I.. -I/home/pbulk/build/biology/plinkseq/work/.buildlink/include -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -MT mongoose-main.o -MD -MP -MF .deps/mongoose-main.Tpo -c -o mongoose-main.o main.c -gdwarf-2