+ case "${usergroup_phase}" in + local run_cmd + run_cmd=run_su + shift + run_su /opt/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/rasmol-2.7.3nb2/work.log + su pbulk -c '"$@"' make /opt/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/rasmol-2.7.3nb2/work.log WARNING: [license.mk] Every package should define a LICENSE. => Checksum BLAKE2s OK for RasMol_2.7.3.tar.gz => Checksum SHA512 OK for RasMol_2.7.3.tar.gz ===> Installing dependencies for rasmol-2.7.3nb2 => Tool dependency imake-[0-9]*: found imake-1.0.10 => Tool dependency cwrappers>=20150314: found cwrappers-20220403 => Tool dependency checkperms>=1.1: found checkperms-1.12 => Full dependency libXext>=1.1: found libXext-1.3.6 => Full dependency libXi>=1.0.0: found libXi-1.8.2 => Build dependency xcb-proto>=1.4: found xcb-proto-1.17.0nb5 => Build dependency xorgproto>=2016.1: found xorgproto-2024.1 => Full dependency libX11>=1.5: found libX11-1.8.12 => Full dependency libXau>=1.0: found libXau-1.0.12 => Full dependency libXdmcp>=0.99: found libXdmcp-1.1.5 => Full dependency libXfixes>=4.0.1: found libXfixes-6.0.2 => Full dependency libxcb>=1.6: found libxcb-1.17.0 ===> Overriding tools for rasmol-2.7.3nb2 ===> Extracting for rasmol-2.7.3nb2 cd /home/pbulk/build/biology/rasmol/work/RasMol_2.7.3/src && /usr/bin/rm -rf RCS doc/RCS src/RCS src/msc/RCS ===> Patching for rasmol-2.7.3nb2 => Applying pkgsrc patches for rasmol-2.7.3nb2 => Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/rasmol/patches/patch-aa => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/rasmol/patches/patch-aa Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-aa,v 1.2 2005/10/07 15:13:21 perry Exp $ | |--- Imakefile.orig 2005-10-06 17:57:49.000000000 -0400 |+++ Imakefile 2005-10-06 18:01:41.000000000 -0400 -------------------------- Patching file Imakefile using Plan A... Hunk #1 succeeded at 92. Hunk #2 succeeded at 108. Hunk #3 succeeded at 177. done => Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/rasmol/patches/patch-ab => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/rasmol/patches/patch-ab Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-ab,v 1.2 2005/10/07 15:13:21 perry Exp $ | |--- cif_ctonum.c.orig 2005-10-06 18:05:48.000000000 -0400 |+++ cif_ctonum.c 2005-10-06 18:07:54.000000000 -0400 -------------------------- Patching file cif_ctonum.c using Plan A... Hunk #1 succeeded at 173. done => Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/rasmol/patches/patch-ac => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/rasmol/patches/patch-ac Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-ac,v 1.4 2025/04/21 16:24:05 wiz Exp $ | |--- rasmol.h.orig 2005-04-28 18:57:25.000000000 -0400 |+++ rasmol.h -------------------------- Patching file rasmol.h using Plan A... Hunk #1 succeeded at 113. done ===> Creating toolchain wrappers for rasmol-2.7.3nb2 ===> Configuring for rasmol-2.7.3nb2 /usr/bin/ln -sf /home/pbulk/build/biology/rasmol/work/RasMol_2.7.3/doc /home/pbulk/build/biology/rasmol/work/RasMol_2.7.3/src /usr/bin/ln -sf /home/pbulk/build/biology/rasmol/work/RasMol_2.7.3/data /home/pbulk/build/biology/rasmol/work/RasMol_2.7.3/src cd /home/pbulk/build/biology/rasmol/work/RasMol_2.7.3/src && /usr/bin/sed "s#@@PREFIX@@#/opt/pkg#" rasmol.h > rasmol.h.new && /usr/bin/mv rasmol.h.new rasmol.h => Checking for portability problems in extracted files imake -DUseInstalled -I/opt/pkg/lib/X11/config /opt/pkg/bin/imake: Warning: cleaning Imakefile warning: could not parse version number in output of: cc -V 2>&1 warning: could not parse version number in output of: /opt/SUNWspro/bin/cc -V 2>&1 warning: could not parse version number in output of: CC -V 2>&1 warning: could not parse version number in output of: /opt/SUNWspro/bin/CC -V 2>&1 imake: executing: /opt/pkg/bin/tradcpp -I. -Uunix -D__amd64__ -D__amd64__ -traditional -DSVR4 -D__amd64 -debuglog .imake.cpplog -DUseInstalled -I/opt/pkg/lib/X11/config -DHasGcc2=YES -DHasGcc2ForCplusplus=YES .imake.start.c .imake.start.c:8:9: Warning: non-identical redefinition of HasGcc2 :12:1: Previous definition was here make Makefiles make includes make depend makedepend -- -I/opt/pkg/include -Dsun -DSVR4 -D__EXTENSIONS__ -D__amd64 -DRASMOLDIR=\"/opt/pkg/share/doc/rasmol/\" -D_USE_RASMOL_H_ -DUSE_MAKEDEPEND -- rasmol.c rasmol.h molecule.c molecule.h abstree.c abstree.h cmndline.c cmndline.h command.c command.h tokens.h transfor.c transfor.h render.c render.h x11win.c graphics.h pixutils.c pixutils.h font.h outfile.c outfile.h script.c script.h infile.c infile.h repres.c repres.h tokens.c cif_fract.c cif_fract.h cif.c cif.h cif_ctonum.c cif_ctonum.h cif_stx.c multiple.h multiple.c vector.h vector.c wbrotate.c wbrotate.c langsel.h langsel.c