+ case "${usergroup_phase}" in + local run_cmd + run_cmd=run_su + shift + run_su /opt/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=314 WRKLOG=/tmp/bulklog/py314-scipy-1.16.2/work.log + su pbulk -c '"$@"' make /opt/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent PYTHON_VERSION_REQD=314 WRKLOG=/tmp/bulklog/py314-scipy-1.16.2/work.log => Checksum BLAKE2s OK for scipy-1.16.2.tar.gz => Checksum SHA512 OK for scipy-1.16.2.tar.gz ===> Installing dependencies for py314-scipy-1.16.2 ========================================================================== The supported build options for py314-scipy are: suitesparse You can select which build options to use by setting PKG_DEFAULT_OPTIONS or the following variable. Its current value is shown: PKG_OPTIONS.scipy (not defined) ========================================================================== ========================================================================== The following variables will affect the build process of this package, py314-scipy-1.16.2. Their current value is shown below: * PKGSRC_BLAS_TYPES = netlib openblas openblas_pthread openblas_openmp * PYTHON_VERSION_DEFAULT = 313 Based on these variables, the following variables have been set: * BLAS_INCLUDES = -I/opt/pkg/include/netlib * BLAS_LIBS = -lblas * BLAS_PC = blas * BLAS_TYPE = netlib * CBLAS_LIBS = -lcblas -lblas * CBLAS_PC = cblas * LAPACKE_LIBS = -llapacke -llapack -lblas * LAPACKE_PC = lapacke * LAPACK_LIBS = -llapack -lblas * LAPACK_PC = lapack * PYPACKAGE = python314 You may want to abort the process now with CTRL-C and change the value of variables in the first group before continuing. Be sure to run `/opt/pkg/bin/bmake clean' after the changes. ========================================================================== => Tool dependency py314-cython>=3.0.8: found py314-cython-3.1.4 => Tool dependency meson>=1.5.0: found meson-1.9.1 => Tool dependency py314-meson_python>=0.15.0: found py314-meson_python-0.18.0 => Tool dependency py314-wheel-[0-9]*: found py314-wheel-0.45.1nb1 => Tool dependency py314-pythran>=0.14.0: found py314-pythran-0.18.0 => Tool dependency py314-build>=0: found py314-build-1.3.0 => Tool dependency py314-installer>=0.7.0nb1: found py314-installer-0.7.0nb3 => Tool dependency pkgconf-[0-9]*: found pkgconf-2.4.3nb1 => Tool dependency cwrappers>=20150314: found cwrappers-20220403 => Tool dependency checkperms>=1.1: found checkperms-1.12 => Build dependency py314-pybind11>=2.5.0: found py314-pybind11-3.0.1 => Build dependency py314-pythran>=0.10.0: found py314-pythran-0.18.0 => Full dependency cblas>=3.9.1nb1: found cblas-3.12.0 => Full dependency fftw>=3.3.10nb1: found fftw-3.3.10nb2 => Full dependency lapack>=3.9.0nb1: found lapack-3.12.0 => Full dependency lapacke>=3.9.1nb2: found lapacke-3.12.0 => Full dependency py314-cython>=0.12.1: found py314-cython-3.1.4 => Full dependency py314-numpy>=1.23.5: found py314-numpy-2.3.3 => Build dependency python314>=3.14.0: found python314-3.14.0 => Full dependency blas>=3.9.0: found blas-3.12.0 ===> Overriding tools for py314-scipy-1.16.2 ===> Extracting for py314-scipy-1.16.2 ===> Patching for py314-scipy-1.16.2 => Applying pkgsrc patches for py314-scipy-1.16.2 => Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-scipy/patches/patch-scipy_ndimage_src___rank__filter__1d.cpp => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-scipy/patches/patch-scipy_ndimage_src___rank__filter__1d.cpp Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-scipy_ndimage_src___rank__filter__1d.cpp,v 1.1 2025/01/07 15:38:35 jperkin Exp $ | |Avoid WRAP conflict from sys/termios.h on illumos. | |--- scipy/ndimage/src/_rank_filter_1d.cpp.orig 2025-01-07 15:15:58.549682110 +0000 |+++ scipy/ndimage/src/_rank_filter_1d.cpp -------------------------- Patching file scipy/ndimage/src/_rank_filter_1d.cpp using Plan A... Hunk #1 succeeded at 18. done => Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-scipy/patches/patch-scipy_spatial___ckdtree.pyx => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-scipy/patches/patch-scipy_spatial___ckdtree.pyx Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-scipy_spatial___ckdtree.pyx,v 1.4 2023/07/17 19:39:56 tnn Exp $ | |Fix missing isnan/isinf. |Build breaks on at least NetBSD-10.99.4-aarch64 without this: | |scipy/spatial/_ckdtree.cxx: In function 'PyObject* __pyx_pf_5scipy_7spatial_8_ckdtree_7cKDTree_16count_neighbors(__pyx_obj_5scipy_7spatial_8_ckdtree_cKDTree*, __pyx_obj_5scipy_7spatial_8_ckdtree_cKDTree*, PyObject*, __pyx_t_5numpy_float64_t, PyObject*, int)': |scipy/spatial/_ckdtree.cxx:13392:19: error: 'isinf' was not declared in this scope; did you mean 'std::isinf'? | |--- scipy/spatial/_ckdtree.pyx.orig 1970-01-01 00:00:00.000000000 +0000 |+++ scipy/spatial/_ckdtree.pyx -------------------------- Patching file scipy/spatial/_ckdtree.pyx using Plan A... Hunk #1 succeeded at 16. done => Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-scipy/patches/patch-scipy_special_boost__special__functions.h => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-scipy/patches/patch-scipy_special_boost__special__functions.h Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-scipy_special_boost__special__functions.h,v 1.2 2025/01/05 08:58:47 adam Exp $ | |Fix build. | |--- scipy/special/boost_special_functions.h.orig 2025-01-02 22:53:29.000000000 +0000 |+++ scipy/special/boost_special_functions.h -------------------------- Patching file scipy/special/boost_special_functions.h using Plan A... Hunk #1 succeeded at 5. done => Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-scipy/patches/patch-scipy_special_wright.hh => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-scipy/patches/patch-scipy_special_wright.hh Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-scipy_special_wright.hh,v 1.1 2023/05/08 20:39:18 tnn Exp $ | |Fix missing isnan/isinf. | |--- scipy/special/wright.hh.orig 1970-01-01 00:00:00.000000000 +0000 |+++ scipy/special/wright.hh -------------------------- Patching file scipy/special/wright.hh using Plan A... Hunk #1 succeeded at 2. done => Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-scipy/patches/patch-scipy_stats___unuran_meson.build => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-scipy/patches/patch-scipy_stats___unuran_meson.build Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-scipy_stats___unuran_meson.build,v 1.1 2023/08/26 19:50:01 tnn Exp $ | |On NetBSD/powerpc and evbarm, you can't build with _ISOC99_SOURCE defined, |the include of deep down in the python headers will fail |with undefined types. | |--- scipy/stats/_unuran/meson.build.orig 1970-01-01 00:00:00.000000000 +0000 |+++ scipy/stats/_unuran/meson.build -------------------------- Patching file scipy/stats/_unuran/meson.build using Plan A... Hunk #1 succeeded at 208 (offset 4 lines). done => Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-scipy/patches/patch-subprojects_xsf_include_xsf_amos_amos.h => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-scipy/patches/patch-subprojects_xsf_include_xsf_amos_amos.h Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-subprojects_xsf_include_xsf_amos_amos.h,v 1.1 2025/08/20 12:19:24 adam Exp $ | |Prefer C++ headers. | |--- subprojects/xsf/include/xsf/amos/amos.h.orig 2025-04-26 00:49:42.000000000 +0000 |+++ subprojects/xsf/include/xsf/amos/amos.h -------------------------- Patching file subprojects/xsf/include/xsf/amos/amos.h using Plan A... Hunk #1 succeeded at 94. done ===> Creating toolchain wrappers for py314-scipy-1.16.2 ===> Configuring for py314-scipy-1.16.2 /usr/bin/ln -sf /opt/pkg/bin/pybind11-config-3.14 /home/pbulk/build/math/py-scipy/work/.buildlink/bin/pybind11-config => Fixing f2py binary name. => Fixing pythran binary name. => Checking for portability problems in extracted files