+ case "${usergroup_phase}" in + local run_cmd + run_cmd=run_su + shift + run_su /opt/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/hdf5-1.14.6/work.log + su pbulk -c '"$@"' make /opt/pkg/bin/bmake configure BATCH=1 DEPENDS_TARGET=/nonexistent WRKLOG=/tmp/bulklog/hdf5-1.14.6/work.log => Checksum BLAKE2s OK for hdf5-1.14.6.tar.gz => Checksum SHA512 OK for hdf5-1.14.6.tar.gz ===> Installing dependencies for hdf5-1.14.6 ========================================================================== The supported build options for hdf5 are: hdf5-unsafe-threads szip threads The currently selected options are: szip You can select which build options to use by setting PKG_DEFAULT_OPTIONS or the following variable. Its current value is shown: PKG_OPTIONS.hdf5 (not defined) ========================================================================== => Tool dependency cmake>=0: found cmake-4.2.3nb1 => Tool dependency pax>=20040802: found pax-20210219 => Tool dependency cwrappers>=20150314: found cwrappers-20220403 => Tool dependency checkperms>=1.1: found checkperms-1.12 => Full dependency libaec>=1.0.4: found libaec-1.1.3 => Full dependency zlib>=1.2.3: found zlib-1.3.1 ===> Overriding tools for hdf5-1.14.6 ===> Extracting for hdf5-1.14.6 /bin/cp /home/pbulk/build/devel/hdf5/work/hdf5-hdf5_1.14.6/config/freebsd /home/pbulk/build/devel/hdf5/work/hdf5-hdf5_1.14.6/config/netbsd /bin/cp /home/pbulk/build/devel/hdf5/work/hdf5-hdf5_1.14.6/config/freebsd /home/pbulk/build/devel/hdf5/work/hdf5-hdf5_1.14.6/config/netbsdelf ===> Patching for hdf5-1.14.6 => Applying pkgsrc patches for hdf5-1.14.6 => Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/devel/hdf5/../../devel/hdf5/patches/patch-CMakeInstallation.cmake => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/devel/hdf5/../../devel/hdf5/patches/patch-CMakeInstallation.cmake Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-CMakeInstallation.cmake,v 1.1 2025/03/05 06:24:20 adam Exp $ | |Do not install files in top-level directory. | |--- CMakeInstallation.cmake.orig 2025-03-03 16:53:10.157608369 +0000 |+++ CMakeInstallation.cmake -------------------------- Patching file CMakeInstallation.cmake using Plan A... Hunk #1 succeeded at 189. done => Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/devel/hdf5/../../devel/hdf5/patches/patch-config_cmake_HDFMacros.cmake => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/devel/hdf5/../../devel/hdf5/patches/patch-config_cmake_HDFMacros.cmake Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-config_cmake_HDFMacros.cmake,v 1.1 2025/03/05 06:24:20 adam Exp $ | |On Darwin, do not install binaries with @rpath. | |--- config/cmake/HDFMacros.cmake.orig 2025-03-03 17:00:50.920692184 +0000 |+++ config/cmake/HDFMacros.cmake -------------------------- Patching file config/cmake/HDFMacros.cmake using Plan A... Hunk #1 succeeded at 466. done => Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/devel/hdf5/../../devel/hdf5/patches/patch-tools_test_h5dump_testh5dump.sh.in => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/devel/hdf5/../../devel/hdf5/patches/patch-tools_test_h5dump_testh5dump.sh.in Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-tools_test_h5dump_testh5dump.sh.in,v 1.1 2022/11/06 17:00:56 adam Exp $ | |Portability fix. | |--- tools/test/h5dump/testh5dump.sh.in.orig 2022-11-05 18:51:12.000000000 +0000 |+++ tools/test/h5dump/testh5dump.sh.in -------------------------- Patching file tools/test/h5dump/testh5dump.sh.in using Plan A... Hunk #1 succeeded at 815 (offset -68 lines). done => Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/devel/hdf5/../../devel/hdf5/patches/patch-tools_test_h5repack_h5repack.sh.in => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/devel/hdf5/../../devel/hdf5/patches/patch-tools_test_h5repack_h5repack.sh.in Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-tools_test_h5repack_h5repack.sh.in,v 1.3 2022/11/06 17:00:56 adam Exp $ | |Portability fix. | |--- tools/test/h5repack/h5repack.sh.in.orig 2022-05-25 21:09:13.000000000 +0000 |+++ tools/test/h5repack/h5repack.sh.in -------------------------- Patching file tools/test/h5repack/h5repack.sh.in using Plan A... Hunk #1 succeeded at 908 (offset 17 lines). Hunk #2 succeeded at 1007 (offset 17 lines). done ===> Creating toolchain wrappers for hdf5-1.14.6 ===> Configuring for hdf5-1.14.6 => Replacing bash interpreter in utils/subfiling_vfd/h5fuse.in. => Checking for portability problems in extracted files -- The C compiler identification is GNU 14.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /home/pbulk/build/devel/hdf5/work/.cwrapper/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Final: share -- Looking for include file sys/file.h -- Looking for include file sys/file.h - found -- Looking for include files sys/file.h, sys/ioctl.h -- Looking for include files sys/file.h, sys/ioctl.h - found -- Looking for 3 include files sys/file.h, ..., sys/resource.h -- Looking for 3 include files sys/file.h, ..., sys/resource.h - found -- Looking for 4 include files sys/file.h, ..., sys/socket.h -- Looking for 4 include files sys/file.h, ..., sys/socket.h - found -- Looking for 5 include files sys/file.h, ..., sys/stat.h -- Looking for 5 include files sys/file.h, ..., sys/stat.h - found -- Looking for 6 include files sys/file.h, ..., sys/time.h -- Looking for 6 include files sys/file.h, ..., sys/time.h - found -- Looking for 7 include files sys/file.h, ..., sys/types.h -- Looking for 7 include files sys/file.h, ..., sys/types.h - found -- Looking for 8 include files sys/file.h, ..., features.h -- Looking for 8 include files sys/file.h, ..., features.h - not found -- Looking for 8 include files sys/file.h, ..., dirent.h -- Looking for 8 include files sys/file.h, ..., dirent.h - found -- Looking for 9 include files sys/file.h, ..., unistd.h -- Looking for 9 include files sys/file.h, ..., unistd.h - found -- Looking for 10 include files sys/file.h, ..., pwd.h -- Looking for 10 include files sys/file.h, ..., pwd.h - found -- Looking for 11 include files sys/file.h, ..., pthread.h -- Looking for 11 include files sys/file.h, ..., pthread.h - found -- Looking for 12 include files sys/file.h, ..., dlfcn.h -- Looking for 12 include files sys/file.h, ..., dlfcn.h - found -- Looking for 13 include files sys/file.h, ..., netinet/in.h -- Looking for 13 include files sys/file.h, ..., netinet/in.h - found -- Looking for 14 include files sys/file.h, ..., netdb.h -- Looking for 14 include files sys/file.h, ..., netdb.h - found -- Looking for 15 include files sys/file.h, ..., arpa/inet.h -- Looking for 15 include files sys/file.h, ..., arpa/inet.h - found -- Looking for include file quadmath.h -- Looking for include file quadmath.h - found -- Looking for ceil in m; -- Looking for ceil in m; - found -- Looking for dlopen in dl;m -- Looking for dlopen in dl;m - found -- Looking for WSAStartup in ws2_32;m;dl -- Looking for WSAStartup in ws2_32;m;dl - not found -- Looking for gethostbyname in wsock32;m;dl -- Looking for gethostbyname in wsock32;m;dl - not found -- Looking for gethostname in ucb;m;dl -- Looking for gethostname in ucb;m;dl - not found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of char -- Check size of char - done -- Check size of short -- Check size of short - done -- Check size of int -- Check size of int - done -- Check size of unsigned -- Check size of unsigned - done -- Check size of long -- Check size of long - done -- Check size of long long -- Check size of long long - done -- Check size of float -- Check size of float - done -- Check size of double -- Check size of double - done -- Check size of long double -- Check size of long double - done -- Check size of int8_t -- Check size of int8_t - done -- Check size of uint8_t -- Check size of uint8_t - done -- Check size of int_least8_t -- Check size of int_least8_t - done -- Check size of uint_least8_t -- Check size of uint_least8_t - done -- Check size of int_fast8_t -- Check size of int_fast8_t - done -- Check size of uint_fast8_t -- Check size of uint_fast8_t - done -- Check size of int16_t -- Check size of int16_t - done -- Check size of uint16_t -- Check size of uint16_t - done -- Check size of int_least16_t -- Check size of int_least16_t - done -- Check size of uint_least16_t -- Check size of uint_least16_t - done -- Check size of int_fast16_t -- Check size of int_fast16_t - done -- Check size of uint_fast16_t -- Check size of uint_fast16_t - done -- Check size of int32_t -- Check size of int32_t - done -- Check size of uint32_t -- Check size of uint32_t - done -- Check size of int_least32_t -- Check size of int_least32_t - done -- Check size of uint_least32_t -- Check size of uint_least32_t - done -- Check size of int_fast32_t -- Check size of int_fast32_t - done -- Check size of uint_fast32_t -- Check size of uint_fast32_t - done -- Check size of int64_t -- Check size of int64_t - done -- Check size of uint64_t -- Check size of uint64_t - done -- Check size of int_least64_t -- Check size of int_least64_t - done -- Check size of uint_least64_t -- Check size of uint_least64_t - done -- Check size of int_fast64_t -- Check size of int_fast64_t - done -- Check size of uint_fast64_t -- Check size of uint_fast64_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of ssize_t -- Check size of ssize_t - done -- Check size of ptrdiff_t -- Check size of ptrdiff_t - done -- Check size of off_t -- Check size of off_t - done -- Check size of time_t -- Check size of time_t - done -- Check size of _Bool -- Check size of _Bool - done -- Looking for CLOCK_MONOTONIC -- Looking for CLOCK_MONOTONIC - not found -- Performing Test H5_HAVE_TM_GMTOFF -- Performing Test H5_HAVE_TM_GMTOFF - Failed -- Performing Test H5_HAVE___TM_GMTOFF -- Performing Test H5_HAVE___TM_GMTOFF - Failed -- Performing Test H5_HAVE_STRUCT_TIMEZONE -- Performing Test H5_HAVE_STRUCT_TIMEZONE - Failed -- Looking for gettimeofday -- Looking for gettimeofday - found -- Performing Test H5_HAVE_STAT_ST_BLOCKS -- Performing Test H5_HAVE_STAT_ST_BLOCKS - Success -- Looking for ioctl -- Looking for ioctl - found -- Performing Test H5_HAVE_STRUCT_VIDEOCONFIG -- Performing Test H5_HAVE_STRUCT_VIDEOCONFIG - Failed -- Performing Test H5_HAVE_STRUCT_TEXT_INFO -- Performing Test H5_HAVE_STRUCT_TEXT_INFO - Failed -- Looking for _getvideoconfig -- Looking for _getvideoconfig - not found -- Looking for gettextinfo -- Looking for gettextinfo - not found -- Looking for _scrsize -- Looking for _scrsize - not found -- Looking for GetConsoleScreenBufferInfo -- Looking for GetConsoleScreenBufferInfo - not found -- Looking for TIOCGWINSZ -- Looking for TIOCGWINSZ - not found -- Looking for TIOCGETD -- Looking for TIOCGETD - not found -- Looking for alarm -- Looking for alarm - found -- Looking for fcntl -- Looking for fcntl - found -- Looking for flock -- Looking for flock - found -- Looking for fork -- Looking for fork - found -- Looking for gethostname -- Looking for gethostname - found -- Looking for getrusage -- Looking for getrusage - found -- Looking for pread -- Looking for pread - found -- Looking for pwrite -- Looking for pwrite - found -- Looking for rand_r -- Looking for rand_r - found -- Looking for random -- Looking for random - found -- Looking for strcasestr -- Looking for strcasestr - found -- Looking for strdup -- Looking for strdup - found -- Looking for symlink -- Looking for symlink - found -- Looking for tmpfile -- Looking for tmpfile - found -- Looking for asprintf -- Looking for asprintf - found -- Looking for vasprintf -- Looking for vasprintf - found -- Looking for waitpid -- Looking for waitpid - found -- Looking for sigsetjmp -- Looking for sigsetjmp - found -- Looking for clock_gettime -- Looking for clock_gettime - found -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for clock_gettime in posix4 -- Looking for clock_gettime in posix4 - found -- Check size of CLOCK_MONOTONIC_COARSE -- Check size of CLOCK_MONOTONIC_COARSE - failed -- Checking if _Float16 support is available -- Check size of _Float16 -- Check size of _Float16 - done -- Looking for FLT16_EPSILON -- Looking for FLT16_EPSILON - found -- Looking for FLT16_MIN -- Looking for FLT16_MIN - found -- Looking for FLT16_MAX -- Looking for FLT16_MAX - found -- Looking for FLT16_MIN_10_EXP -- Looking for FLT16_MIN_10_EXP - found -- Looking for FLT16_MAX_10_EXP -- Looking for FLT16_MAX_10_EXP - found -- Looking for FLT16_MANT_DIG -- Looking for FLT16_MANT_DIG - found -- Looking for fabsf16 -- Looking for fabsf16 - not found -- Found Perl: /home/pbulk/build/devel/hdf5/work/.tools/bin/perl -- ... disable color and URL extended diagnostic messages -- ....All Warnings are enabled -- Found ZLIB: /home/pbulk/build/devel/hdf5/work/.buildlink/lib/libz.so (found version "1.3.1") -- Found libaec: /home/pbulk/build/devel/hdf5/work/.buildlink/cmake/libaec-config.cmake (found version "1.1.3") -- H5_ZLIB_HEADER=zlib.h -- HDF5 Example H5EX_RESOURCES_DIR: /home/pbulk/build/devel/hdf5/work/hdf5-hdf5_1.14.6/config/cmake -- HDF5 H5_LIBVER_DIR: 114 HDF5_API_VERSION: v114 -- HDF5 Example link libs: hdf5-shared;hdf5_hl-shared Includes: /home/pbulk/build/devel/hdf5/work/hdf5-hdf5_1.14.6/src;/home/pbulk/build/devel/hdf5/work/hdf5-hdf5_1.14.6/src/H5FDsubfiling;/home/pbulk/build/devel/hdf5/work/hdf5-hdf5_1.14.6/cmake-pkgsrc-build/src;/home/pbulk/build/devel/hdf5/work/hdf5-hdf5_1.14.6/hl/src;/home/pbulk/build/devel/hdf5/work/hdf5-hdf5_1.14.6/cmake-pkgsrc-build/hl/src -- HDF5 link libs: hdf5-shared;hdf5_hl-shared -- HDF5 H5_LIBVER_DIR: 114 HDF5_VERSION_MAJOR: 1.14 -- Configuring done (242.9s) -- Generating done (3.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_MANDIR -- Build files have been written to: /home/pbulk/build/devel/hdf5/work/hdf5-hdf5_1.14.6/cmake-pkgsrc-build WARNING: Please add USE_TOOLS+=perl to the package Makefile. WARNING: Please add USE_TOOLS+=perl to the package Makefile.