=> "/opt/pkg/bin/bmake" ["-C", "/data/jenkins/workspace/pkgsrc-upstream-trunk/biology/racon", "all", "BATCH=1", "DEPENDS_TARGET=/nonexistent"] ===> Building for racon-1.4.3 [ 3%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/adler32.c.o [ 6%] Building CXX object vendor/logger/CMakeFiles/logger.dir/src/logger.cpp.o /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/adler32.c: In function 'adler32_z': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/adler32.c:63:15: warning: old-style function definition [-Wold-style-definition] 63 | uLong ZEXPORT adler32_z(adler, buf, len) | ^~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/adler32.c: In function 'adler32': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/adler32.c:134:15: warning: old-style function definition [-Wold-style-definition] 134 | uLong ZEXPORT adler32(adler, buf, len) | ^~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/adler32.c: In function 'adler32_combine_': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/adler32.c:143:13: warning: old-style function definition [-Wold-style-definition] 143 | local uLong adler32_combine_(adler1, adler2, len2) | ^~~~~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/adler32.c: In function 'adler32_combine': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/adler32.c:172:15: warning: old-style function definition [-Wold-style-definition] 172 | uLong ZEXPORT adler32_combine(adler1, adler2, len2) | ^~~~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/adler32.c: In function 'adler32_combine64': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/adler32.c:180:15: warning: old-style function definition [-Wold-style-definition] 180 | uLong ZEXPORT adler32_combine64(adler1, adler2, len2) | ^~~~~~~~~~~~~~~~~ [ 9%] Building CXX object vendor/thread_pool/CMakeFiles/thread_pool.dir/src/thread_pool.cpp.o [ 12%] Building CXX object vendor/edlib/CMakeFiles/edlib_static.dir/edlib/src/edlib.cpp.o [ 15%] Building CXX object vendor/spoa/CMakeFiles/spoa.dir/src/alignment_engine.cpp.o [ 18%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/compress.c.o /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/compress.c: In function 'compress2': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/compress.c:22:13: warning: old-style function definition [-Wold-style-definition] 22 | int ZEXPORT compress2 (dest, destLen, source, sourceLen, level) | ^~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/compress.c: In function 'compress': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/compress.c:68:13: warning: old-style function definition [-Wold-style-definition] 68 | int ZEXPORT compress (dest, destLen, source, sourceLen) | ^~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/compress.c: In function 'compressBound': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/compress.c:81:15: warning: old-style function definition [-Wold-style-definition] 81 | uLong ZEXPORT compressBound (sourceLen) | ^~~~~~~~~~~~~ [ 21%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/crc32.c.o /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c: In function 'crc32_z': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:202:23: warning: old-style function definition [-Wold-style-definition] 202 | unsigned long ZEXPORT crc32_z(crc, buf, len) | ^~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c: In function 'crc32': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:237:23: warning: old-style function definition [-Wold-style-definition] 237 | unsigned long ZEXPORT crc32(crc, buf, len) | ^~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c: In function 'crc32_little': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:266:21: warning: old-style function definition [-Wold-style-definition] 266 | local unsigned long crc32_little(crc, buf, len) | ^~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c: In function 'crc32_big': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:306:21: warning: old-style function definition [-Wold-style-definition] 306 | local unsigned long crc32_big(crc, buf, len) | ^~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c: In function 'gf2_matrix_times': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:344:21: warning: old-style function definition [-Wold-style-definition] 344 | local unsigned long gf2_matrix_times(mat, vec) | ^~~~~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c: In function 'gf2_matrix_square': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:361:12: warning: old-style function definition [-Wold-style-definition] 361 | local void gf2_matrix_square(square, mat) | ^~~~~~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c: In function 'crc32_combine_': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:372:13: warning: old-style function definition [-Wold-style-definition] 372 | local uLong crc32_combine_(crc1, crc2, len2) | ^~~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c: In function 'crc32_combine': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:428:15: warning: old-style function definition [-Wold-style-definition] 428 | uLong ZEXPORT crc32_combine(crc1, crc2, len2) | ^~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c: In function 'crc32_combine64': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/crc32.c:436:15: warning: old-style function definition [-Wold-style-definition] 436 | uLong ZEXPORT crc32_combine64(crc1, crc2, len2) | ^~~~~~~~~~~~~~~ [ 24%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/deflate.c.o /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c: In function 'slide_hash': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:201:12: warning: old-style function definition [-Wold-style-definition] 201 | local void slide_hash(s) | ^~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c: In function 'deflateInit_': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:228:13: warning: old-style function definition [-Wold-style-definition] 228 | int ZEXPORT deflateInit_(strm, level, version, stream_size) | ^~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c: In function 'deflateInit2_': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:240:13: warning: old-style function definition [-Wold-style-definition] 240 | int ZEXPORT deflateInit2_(strm, level, method, windowBits, memLevel, strategy, | ^~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c: In function 'deflateStateCheck': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:353:11: warning: old-style function definition [-Wold-style-definition] 353 | local int deflateStateCheck (strm) | ^~~~~~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c: In function 'deflateSetDictionary': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:376:13: warning: old-style function definition [-Wold-style-definition] 376 | int ZEXPORT deflateSetDictionary (strm, dictionary, dictLength) | ^~~~~~~~~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c: In function 'deflateGetDictionary': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:445:13: warning: old-style function definition [-Wold-style-definition] 445 | int ZEXPORT deflateGetDictionary (strm, dictionary, dictLength) | ^~~~~~~~~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c: In function 'deflateResetKeep': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:467:13: warning: old-style function definition [-Wold-style-definition] 467 | int ZEXPORT deflateResetKeep (strm) | ^~~~~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c: In function 'deflateReset': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:505:13: warning: old-style function definition [-Wold-style-definition] 505 | int ZEXPORT deflateReset (strm) | ^~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c: In function 'deflateSetHeader': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:517:13: warning: old-style function definition [-Wold-style-definition] 517 | int ZEXPORT deflateSetHeader (strm, head) | ^~~~~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c: In function 'deflatePending': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:528:13: warning: old-style function definition [-Wold-style-definition] 528 | int ZEXPORT deflatePending (strm, pending, bits) | ^~~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c: In function 'deflatePrime': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:542:13: warning: old-style function definition [-Wold-style-definition] 542 | int ZEXPORT deflatePrime (strm, bits, value) | ^~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c: In function 'deflateParams': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:568:13: warning: old-style function definition [-Wold-style-definition] 568 | int ZEXPORT deflateParams(strm, level, strategy) | ^~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c: In function 'deflateTune': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:617:13: warning: old-style function definition [-Wold-style-definition] 617 | int ZEXPORT deflateTune(strm, good_length, max_lazy, nice_length, max_chain) | ^~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c: In function 'deflateBound': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:652:15: warning: old-style function definition [-Wold-style-definition] 652 | uLong ZEXPORT deflateBound(strm, sourceLen) | ^~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c: In function 'putShortMSB': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:716:12: warning: old-style function definition [-Wold-style-definition] 716 | local void putShortMSB (s, b) | ^~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c: In function 'flush_pending': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:730:12: warning: old-style function definition [-Wold-style-definition] 730 | local void flush_pending(strm) | ^~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c: In function 'deflate': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:763:13: warning: old-style function definition [-Wold-style-definition] 763 | int ZEXPORT deflate (strm, flush) | ^~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c: In function 'deflateEnd': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1076:13: warning: old-style function definition [-Wold-style-definition] 1076 | int ZEXPORT deflateEnd (strm) | ^~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c: In function 'deflateCopy': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1102:13: warning: old-style function definition [-Wold-style-definition] 1102 | int ZEXPORT deflateCopy (dest, source) | ^~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c: In function 'read_buf': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1164:16: warning: old-style function definition [-Wold-style-definition] 1164 | local unsigned read_buf(strm, buf, size) | ^~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c: In function 'lm_init': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1194:12: warning: old-style function definition [-Wold-style-definition] 1194 | local void lm_init (s) | ^~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c: In function 'longest_match': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1236:12: warning: old-style function definition [-Wold-style-definition] 1236 | local uInt longest_match(s, cur_match) | ^~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c: In function 'fill_window': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1482:12: warning: old-style function definition [-Wold-style-definition] 1482 | local void fill_window(s) | ^~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c: In function 'deflate_stored': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1643:19: warning: old-style function definition [-Wold-style-definition] 1643 | local block_state deflate_stored(s, flush) | ^~~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c: In function 'deflate_fast': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1824:19: warning: old-style function definition [-Wold-style-definition] 1824 | local block_state deflate_fast(s, flush) | ^~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c: In function 'deflate_slow': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:1926:19: warning: old-style function definition [-Wold-style-definition] 1926 | local block_state deflate_slow(s, flush) | ^~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c: In function 'deflate_rle': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:2057:19: warning: old-style function definition [-Wold-style-definition] 2057 | local block_state deflate_rle(s, flush) | ^~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c: In function 'deflate_huff': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/deflate.c:2130:19: warning: old-style function definition [-Wold-style-definition] 2130 | local block_state deflate_huff(s, flush) | ^~~~~~~~~~~~ [ 27%] Linking CXX static library lib/liblogger.a [ 30%] Building CXX object vendor/spoa/CMakeFiles/spoa.dir/src/graph.cpp.o [ 30%] Built target logger [ 33%] Building CXX object vendor/spoa/CMakeFiles/spoa.dir/src/simd_alignment_engine.cpp.o [ 36%] Linking CXX static library lib/libthread_pool.a [ 36%] Built target thread_pool [ 39%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/gzclose.c.o [ 42%] Building CXX object vendor/spoa/CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzclose.c: In function 'gzclose': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzclose.c:11:13: warning: old-style function definition [-Wold-style-definition] 11 | int ZEXPORT gzclose(file) | ^~~~~~~ [ 45%] Linking CXX static library ../../lib/libedlib_static.a [ 48%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/gzlib.c.o /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c: In function 'gz_reset': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:75:12: warning: old-style function definition [-Wold-style-definition] 75 | local void gz_reset(state) | ^~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c: In function 'gz_open': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:91:14: warning: old-style function definition [-Wold-style-definition] 91 | local gzFile gz_open(path, fd, mode) | ^~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c: In function 'gzopen': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:270:16: warning: old-style function definition [-Wold-style-definition] 270 | gzFile ZEXPORT gzopen(path, mode) | ^~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c: In function 'gzopen64': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:278:16: warning: old-style function definition [-Wold-style-definition] 278 | gzFile ZEXPORT gzopen64(path, mode) | ^~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c: In function 'gzdopen': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:286:16: warning: old-style function definition [-Wold-style-definition] 286 | gzFile ZEXPORT gzdopen(fd, mode) | ^~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c: In function 'gzbuffer': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:316:13: warning: old-style function definition [-Wold-style-definition] 316 | int ZEXPORT gzbuffer(file, size) | ^~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c: In function 'gzrewind': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:343:13: warning: old-style function definition [-Wold-style-definition] 343 | int ZEXPORT gzrewind(file) | ^~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c: In function 'gzseek64': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:366:19: warning: old-style function definition [-Wold-style-definition] 366 | z_off64_t ZEXPORT gzseek64(file, offset, whence) | ^~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c: In function 'gzseek': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:443:17: warning: old-style function definition [-Wold-style-definition] 443 | z_off_t ZEXPORT gzseek(file, offset, whence) | ^~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c: In function 'gztell64': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:455:19: warning: old-style function definition [-Wold-style-definition] 455 | z_off64_t ZEXPORT gztell64(file) | ^~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c: In function 'gztell': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:472:17: warning: old-style function definition [-Wold-style-definition] 472 | z_off_t ZEXPORT gztell(file) | ^~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c: In function 'gzoffset64': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:482:19: warning: old-style function definition [-Wold-style-definition] 482 | z_off64_t ZEXPORT gzoffset64(file) | ^~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c: In function 'gzoffset': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:505:17: warning: old-style function definition [-Wold-style-definition] 505 | z_off_t ZEXPORT gzoffset(file) | ^~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c: In function 'gzeof': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:515:13: warning: old-style function definition [-Wold-style-definition] 515 | int ZEXPORT gzeof(file) | ^~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c: In function 'gzerror': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:532:22: warning: old-style function definition [-Wold-style-definition] 532 | const char * ZEXPORT gzerror(file, errnum) | ^~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c: In function 'gzclearerr': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:553:14: warning: old-style function definition [-Wold-style-definition] 553 | void ZEXPORT gzclearerr(file) | ^~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c: In function 'gz_error': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzlib.c:579:20: warning: old-style function definition [-Wold-style-definition] 579 | void ZLIB_INTERNAL gz_error(state, err, msg) | ^~~~~~~~ [ 48%] Built target edlib_static [ 51%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/gzread.c.o /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c: In function 'gz_load': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c:21:11: warning: old-style function definition [-Wold-style-definition] 21 | local int gz_load(state, buf, len, have) | ^~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c: In function 'gz_avail': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c:56:11: warning: old-style function definition [-Wold-style-definition] 56 | local int gz_avail(state) | ^~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c: In function 'gz_look': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c:91:11: warning: old-style function definition [-Wold-style-definition] 91 | local int gz_look(state) | ^~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c: In function 'gz_decomp': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c:175:11: warning: old-style function definition [-Wold-style-definition] 175 | local int gz_decomp(state) | ^~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c: In function 'gz_fetch': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c:229:11: warning: old-style function definition [-Wold-style-definition] 229 | local int gz_fetch(state) | ^~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c: In function 'gz_skip': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c:259:11: warning: old-style function definition [-Wold-style-definition] 259 | local int gz_skip(state, len) | ^~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c: In function 'gz_read': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c:294:16: warning: old-style function definition [-Wold-style-definition] 294 | local z_size_t gz_read(state, buf, len) | ^~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c: In function 'gzread': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c:375:13: warning: old-style function definition [-Wold-style-definition] 375 | int ZEXPORT gzread(file, buf, len) | ^~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c: In function 'gzfread': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c:411:18: warning: old-style function definition [-Wold-style-definition] 411 | z_size_t ZEXPORT gzfread(buf, size, nitems, file) | ^~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c: In function 'gzgetc': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c:447:13: warning: old-style function definition [-Wold-style-definition] 447 | int ZEXPORT gzgetc(file) | ^~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c: In function 'gzgetc_': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c:476:13: warning: old-style function definition [-Wold-style-definition] 476 | int ZEXPORT gzgetc_(file) | ^~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c: In function 'gzungetc': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c:483:13: warning: old-style function definition [-Wold-style-definition] 483 | int ZEXPORT gzungetc(c, file) | ^~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c: In function 'gzgets': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c:543:16: warning: old-style function definition [-Wold-style-definition] 543 | char * ZEXPORT gzgets(file, buf, len) | ^~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c: In function 'gzdirect': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c:607:13: warning: old-style function definition [-Wold-style-definition] 607 | int ZEXPORT gzdirect(file) | ^~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c: In function 'gzclose_r': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzread.c:627:13: warning: old-style function definition [-Wold-style-definition] 627 | int ZEXPORT gzclose_r(file) | ^~~~~~~~~ [ 54%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/gzwrite.c.o /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c: In function 'gz_init': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c:17:11: warning: old-style function definition [-Wold-style-definition] 17 | local int gz_init(state) | ^~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c: In function 'gz_comp': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c:73:11: warning: old-style function definition [-Wold-style-definition] 73 | local int gz_comp(state, flush) | ^~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c: In function 'gz_zero': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c:145:11: warning: old-style function definition [-Wold-style-definition] 145 | local int gz_zero(state, len) | ^~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c: In function 'gz_write': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c:178:16: warning: old-style function definition [-Wold-style-definition] 178 | local z_size_t gz_write(state, buf, len) | ^~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c: In function 'gzwrite': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c:246:13: warning: old-style function definition [-Wold-style-definition] 246 | int ZEXPORT gzwrite(file, buf, len) | ^~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c: In function 'gzfwrite': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c:274:18: warning: old-style function definition [-Wold-style-definition] 274 | z_size_t ZEXPORT gzfwrite(buf, size, nitems, file) | ^~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c: In function 'gzputc': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c:304:13: warning: old-style function definition [-Wold-style-definition] 304 | int ZEXPORT gzputc(file, c) | ^~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c: In function 'gzputs': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c:352:13: warning: old-style function definition [-Wold-style-definition] 352 | int ZEXPORT gzputs(file, str) | ^~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c: In function 'gzflush': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c:553:13: warning: old-style function definition [-Wold-style-definition] 553 | int ZEXPORT gzflush(file, flush) | ^~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c: In function 'gzsetparams': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c:585:13: warning: old-style function definition [-Wold-style-definition] 585 | int ZEXPORT gzsetparams(file, level, strategy) | ^~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c: In function 'gzclose_w': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/gzwrite.c:627:13: warning: old-style function definition [-Wold-style-definition] 627 | int ZEXPORT gzclose_w(file) | ^~~~~~~~~ [ 57%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/inflate.c.o /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c: In function 'inflateStateCheck': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:105:11: warning: old-style function definition [-Wold-style-definition] 105 | local int inflateStateCheck(strm) | ^~~~~~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c: In function 'inflateResetKeep': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:119:13: warning: old-style function definition [-Wold-style-definition] 119 | int ZEXPORT inflateResetKeep(strm) | ^~~~~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c: In function 'inflateReset': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:144:13: warning: old-style function definition [-Wold-style-definition] 144 | int ZEXPORT inflateReset(strm) | ^~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c: In function 'inflateReset2': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:157:13: warning: old-style function definition [-Wold-style-definition] 157 | int ZEXPORT inflateReset2(strm, windowBits) | ^~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c: In function 'inflateInit2_': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:195:13: warning: old-style function definition [-Wold-style-definition] 195 | int ZEXPORT inflateInit2_(strm, windowBits, version, stream_size) | ^~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c: In function 'inflateInit_': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:239:13: warning: old-style function definition [-Wold-style-definition] 239 | int ZEXPORT inflateInit_(strm, version, stream_size) | ^~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c: In function 'inflatePrime': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:247:13: warning: old-style function definition [-Wold-style-definition] 247 | int ZEXPORT inflatePrime(strm, bits, value) | ^~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c: In function 'fixedtables': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:278:12: warning: old-style function definition [-Wold-style-definition] 278 | local void fixedtables(state) | ^~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c: In function 'updatewindow': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:396:11: warning: old-style function definition [-Wold-style-definition] 396 | local int updatewindow(strm, end, copy) | ^~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c: In function 'inflate': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:622:13: warning: old-style function definition [-Wold-style-definition] 622 | int ZEXPORT inflate(strm, flush) | ^~~~~~~ [ 60%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/infback.c.o /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c: In function 'inflateEnd': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:1277:13: warning: old-style function definition [-Wold-style-definition] 1277 | int ZEXPORT inflateEnd(strm) | ^~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c: In function 'inflateGetDictionary': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:1291:13: warning: old-style function definition [-Wold-style-definition] 1291 | int ZEXPORT inflateGetDictionary(strm, dictionary, dictLength) | ^~~~~~~~~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c: In function 'inflateSetDictionary': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:1314:13: warning: old-style function definition [-Wold-style-definition] 1314 | int ZEXPORT inflateSetDictionary(strm, dictionary, dictLength) | ^~~~~~~~~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c: In function 'inflateGetHeader': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:1349:13: warning: old-style function definition [-Wold-style-definition] 1349 | int ZEXPORT inflateGetHeader(strm, head) | ^~~~~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c: In function 'syncsearch': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:1377:16: warning: old-style function definition [-Wold-style-definition] 1377 | local unsigned syncsearch(have, buf, len) | ^~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c: In function 'inflateSync': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:1400:13: warning: old-style function definition [-Wold-style-definition] 1400 | int ZEXPORT inflateSync(strm) | ^~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c: In function 'inflateSyncPoint': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:1451:13: warning: old-style function definition [-Wold-style-definition] 1451 | int ZEXPORT inflateSyncPoint(strm) | ^~~~~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c: In function 'inflateCopy': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:1461:13: warning: old-style function definition [-Wold-style-definition] 1461 | int ZEXPORT inflateCopy(dest, source) | ^~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c: In function 'inflateUndermine': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:1508:13: warning: old-style function definition [-Wold-style-definition] 1508 | int ZEXPORT inflateUndermine(strm, subvert) | ^~~~~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c: In function 'inflateValidate': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:1526:13: warning: old-style function definition [-Wold-style-definition] 1526 | int ZEXPORT inflateValidate(strm, check) | ^~~~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c: In function 'inflateMark': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:1541:14: warning: old-style function definition [-Wold-style-definition] 1541 | long ZEXPORT inflateMark(strm) | ^~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c: In function 'inflateCodesUsed': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inflate.c:1554:23: warning: old-style function definition [-Wold-style-definition] 1554 | unsigned long ZEXPORT inflateCodesUsed(strm) | ^~~~~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/infback.c: In function 'inflateBackInit_': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/infback.c:28:13: warning: old-style function definition [-Wold-style-definition] 28 | int ZEXPORT inflateBackInit_(strm, windowBits, window, version, stream_size) | ^~~~~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/infback.c: In function 'fixedtables': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/infback.c:82:12: warning: old-style function definition [-Wold-style-definition] 82 | local void fixedtables(state) | ^~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/infback.c: In function 'inflateBack': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/infback.c:250:13: warning: old-style function definition [-Wold-style-definition] 250 | int ZEXPORT inflateBack(strm, in, in_desc, out, out_desc) | ^~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/infback.c: In function 'inflateBackEnd': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/infback.c:631:13: warning: old-style function definition [-Wold-style-definition] 631 | int ZEXPORT inflateBackEnd(strm) | ^~~~~~~~~~~~~~ [ 63%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/inftrees.c.o /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp:313:30: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m256i []'} [-Wignored-attributes] 313 | std::unique_ptr<__mxxxi[]> sequence_profile_storage; | ^ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp:318:30: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m256i []'} [-Wignored-attributes] 318 | std::unique_ptr<__mxxxi[]> M_storage; | ^ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp:322:30: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m256i []'} [-Wignored-attributes] 322 | std::unique_ptr<__mxxxi[]> masks_storage; | ^ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp:326:30: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m256i []'} [-Wignored-attributes] 326 | std::unique_ptr<__mxxxi[]> penalties_storage; | ^ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp: In member function 'void spoa::SimdAlignmentEngine::realloc(uint32_t, uint32_t, uint32_t)': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp:386:69: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m256i []'} [-Wignored-attributes] 386 | pimpl_->sequence_profile_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp:397:54: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m256i []'} [-Wignored-attributes] 397 | pimpl_->M_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp:405:58: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m256i []'} [-Wignored-attributes] 405 | pimpl_->masks_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp:413:62: warning: ignoring attributes on template argument 'spoa::__mxxxi []' {aka '__m256i []'} [-Wignored-attributes] 413 | pimpl_->penalties_storage = std::unique_ptr<__mxxxi[]>(storage); | ^ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inftrees.c: In function 'inflate_table': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inftrees.c:32:19: warning: old-style function definition [-Wold-style-definition] 32 | int ZLIB_INTERNAL inflate_table(type, lens, codes, table, bits, work) | ^~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp: In instantiation of 'T* spoa::allocateAlignedMemory(T**, uint32_t, uint32_t) [with T = __vector(4) long long int; uint32_t = unsigned int]': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp:383:57: required from here 383 | pimpl_->sequence_profile = allocateAlignedMemory(&storage, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ 384 | pimpl_->sequence_profile_size, kRegisterSize / 8); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp:36:16: warning: 'new' of type '__vector(4) long long int' with extended alignment 32 [-Waligned-new=] 36 | *storage = new T[size + alignment - 1]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp:36:16: note: uses 'void* operator new [](std::size_t)', which does not have an alignment parameter /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/spoa/src/simd_alignment_engine.cpp:36:16: note: use '-faligned-new' to enable C++17 over-aligned new support [ 66%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/inffast.c.o /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inffast.c: In function 'inflate_fast': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/inffast.c:50:20: warning: old-style function definition [-Wold-style-definition] 50 | void ZLIB_INTERNAL inflate_fast(strm, start) | ^~~~~~~~~~~~ [ 69%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/trees.c.o /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c: In function '_tr_init': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:379:20: warning: old-style function definition [-Wold-style-definition] 379 | void ZLIB_INTERNAL _tr_init(s) | ^~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c: In function 'init_block': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:407:12: warning: old-style function definition [-Wold-style-definition] 407 | local void init_block(s) | ^~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c: In function 'pqdownheap': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:451:12: warning: old-style function definition [-Wold-style-definition] 451 | local void pqdownheap(s, tree, k) | ^~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c: In function 'gen_bitlen': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:486:12: warning: old-style function definition [-Wold-style-definition] 486 | local void gen_bitlen(s, desc) | ^~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c: In function 'gen_codes': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:572:12: warning: old-style function definition [-Wold-style-definition] 572 | local void gen_codes (tree, max_code, bl_count) | ^~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c: In function 'build_tree': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:615:12: warning: old-style function definition [-Wold-style-definition] 615 | local void build_tree(s, desc) | ^~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c: In function 'scan_tree': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:703:12: warning: old-style function definition [-Wold-style-definition] 703 | local void scan_tree (s, tree, max_code) | ^~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c: In function 'send_tree': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:748:12: warning: old-style function definition [-Wold-style-definition] 748 | local void send_tree (s, tree, max_code) | ^~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c: In function 'build_bl_tree': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:799:11: warning: old-style function definition [-Wold-style-definition] 799 | local int build_bl_tree(s) | ^~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c: In function 'send_all_trees': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:834:12: warning: old-style function definition [-Wold-style-definition] 834 | local void send_all_trees(s, lcodes, dcodes, blcodes) | ^~~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c: In function '_tr_stored_block': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:863:20: warning: old-style function definition [-Wold-style-definition] 863 | void ZLIB_INTERNAL _tr_stored_block(s, buf, stored_len, last) | ^~~~~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c: In function '_tr_flush_bits': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:886:20: warning: old-style function definition [-Wold-style-definition] 886 | void ZLIB_INTERNAL _tr_flush_bits(s) | ^~~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c: In function '_tr_align': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:896:20: warning: old-style function definition [-Wold-style-definition] 896 | void ZLIB_INTERNAL _tr_align(s) | ^~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c: In function '_tr_flush_block': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:911:20: warning: old-style function definition [-Wold-style-definition] 911 | void ZLIB_INTERNAL _tr_flush_block(s, buf, stored_len, last) | ^~~~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c: In function '_tr_tally': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:1014:19: warning: old-style function definition [-Wold-style-definition] 1014 | int ZLIB_INTERNAL _tr_tally (s, dist, lc) | ^~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c: In function 'compress_block': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:1064:12: warning: old-style function definition [-Wold-style-definition] 1064 | local void compress_block(s, ltree, dtree) | ^~~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c: In function 'detect_data_type': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:1124:11: warning: old-style function definition [-Wold-style-definition] 1124 | local int detect_data_type(s) | ^~~~~~~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c: In function 'bi_reverse': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:1158:16: warning: old-style function definition [-Wold-style-definition] 1158 | local unsigned bi_reverse(code, len) | ^~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c: In function 'bi_flush': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:1173:12: warning: old-style function definition [-Wold-style-definition] 1173 | local void bi_flush(s) | ^~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c: In function 'bi_windup': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/trees.c:1190:12: warning: old-style function definition [-Wold-style-definition] 1190 | local void bi_windup(s) | ^~~~~~~~~ [ 72%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/uncompr.c.o /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/uncompr.c: In function 'uncompress2': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/uncompr.c:27:13: warning: old-style function definition [-Wold-style-definition] 27 | int ZEXPORT uncompress2 (dest, destLen, source, sourceLen) | ^~~~~~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/uncompr.c: In function 'uncompress': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/uncompr.c:86:13: warning: old-style function definition [-Wold-style-definition] 86 | int ZEXPORT uncompress (dest, destLen, source, sourceLen) | ^~~~~~~~~~ [ 75%] Building C object vendor/bioparser/vendor/zlib/CMakeFiles/zlibstatic.dir/zutil.c.o /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.c: In function 'zError': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.c:133:22: warning: old-style function definition [-Wold-style-definition] 133 | const char * ZEXPORT zError(err) | ^~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.c: In function 'zcalloc': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.c:305:22: warning: old-style function definition [-Wold-style-definition] 305 | voidpf ZLIB_INTERNAL zcalloc (opaque, items, size) | ^~~~~~~ /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.c: In function 'zcfree': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/vendor/zlib/zutil.c:315:20: warning: old-style function definition [-Wold-style-definition] 315 | void ZLIB_INTERNAL zcfree (opaque, ptr) | ^~~~~~ [ 78%] Linking C static library ../../lib/libz.a [ 78%] Built target zlibstatic [ 81%] Linking CXX static library lib/libspoa.a [ 81%] Built target spoa [ 84%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o [ 87%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o [ 90%] Building CXX object CMakeFiles/racon.dir/src/main.cpp.o [ 93%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o [ 96%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o In file included from /home/pbulk/work/biology/racon/work/racon-v1.4.3/src/polisher.cpp:19: /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/include/bioparser/bioparser.hpp: In member function 'bool bioparser::Parser::parse(std::vector >&, uint64_t, bool)': /home/pbulk/work/biology/racon/work/racon-v1.4.3/vendor/bioparser/include/bioparser/bioparser.hpp:216:22: error: 'class bioparser::Parser' has no member named 'parse_objects' [-Wtemplate-body] 216 | auto ret = this->parse_objects(tmp, max_bytes, trim); | ^~~~~~~~~~~~~ --- CMakeFiles/racon.dir/src/polisher.cpp.o --- *** [CMakeFiles/racon.dir/src/polisher.cpp.o] Error code 1 bmake[2]: stopped making "CMakeFiles/racon.dir/build" in /home/pbulk/work/biology/racon/work/racon-v1.4.3/cmake-pkgsrc-build bmake[2]: 1 error bmake[2]: stopped making "CMakeFiles/racon.dir/build" in /home/pbulk/work/biology/racon/work/racon-v1.4.3/cmake-pkgsrc-build --- CMakeFiles/racon.dir/all --- *** [CMakeFiles/racon.dir/all] Error code 2 bmake[1]: stopped making "all" in /home/pbulk/work/biology/racon/work/racon-v1.4.3/cmake-pkgsrc-build bmake[1]: 1 error bmake[1]: stopped making "all" in /home/pbulk/work/biology/racon/work/racon-v1.4.3/cmake-pkgsrc-build *** [all] Error code 2 bmake: stopped making "all" in /home/pbulk/work/biology/racon/work/racon-v1.4.3/cmake-pkgsrc-build bmake: 1 error bmake: stopped making "all" in /home/pbulk/work/biology/racon/work/racon-v1.4.3/cmake-pkgsrc-build *** Error code 2 Stop. bmake[1]: stopped making "all" in /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/racon *** Error code 1 Stop. bmake: stopped making "all" in /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/racon