=> "/opt/pkg/bin/bmake" ["-C", "/data/jenkins/workspace/pkgsrc-upstream-trunk/biology/gabedit", "configure", "BATCH=1", "DEPENDS_TARGET=/nonexistent"] WARNING: [license.mk] Every package should define a LICENSE. => Checksum BLAKE2s OK for GabeditSrc248.tar.gz => Checksum SHA512 OK for GabeditSrc248.tar.gz ===> Installing dependencies for gabedit-2.4.8nb25 ========================================================================== The following variables will affect the build process of this package, gabedit-2.4.8nb25. Their current value is shown below: * JPEG_DEFAULT = libjpeg-turbo Based on these variables, the following variables have been set: * JPEGBASE (defined, but empty) * JPEG_TYPE = libjpeg-turbo You may want to abort the process now with CTRL-C and change the value of variables in the first group before continuing. Be sure to run `/opt/pkg/bin/bmake clean' after the changes. ========================================================================== => Tool dependency glib2-tools-[0-9]*: found glib2-tools-2.88.1 => Tool dependency gmake>=3.81: found gmake-4.4.1 => Tool dependency pkgconf-[0-9]*: found pkgconf-2.5.1 => Tool dependency cwrappers>=20150314: found cwrappers-20220403 => Tool dependency checkperms>=1.1: found checkperms-1.12 => Full dependency gtk2+>=2.24.33nb36: found gtk2+-2.24.33nb38 => Full dependency gtkglext>=1.2.0nb60: found gtkglext-1.2.0nb60 => Build dependency xcb-proto>=1.4: found xcb-proto-1.17.0nb6 => Build dependency xorgproto>=2016.1: found xorgproto-2025.1 => Full dependency MesaLib>=3.4.2: found MesaLib-21.3.9nb5 => Full dependency at-spi2-core>=2.3.2: found at-spi2-core-2.60.3nb1 => Full dependency brotli>=1.0.1: found brotli-1.2.0 => Full dependency bzip2>=1.0.1: found bzip2-1.0.8 => Full dependency cairo>=1.0.0nb2: found cairo-1.18.4nb3 => Full dependency dbus>=0.91: found dbus-1.16.2nb2 => Full dependency expat>=1.95.7: found expat-2.8.1 => Full dependency fontconfig>=2.17.0: found fontconfig-2.17.1nb1 => Full dependency freetype2>=2.13.0: found freetype2-2.14.3 => Full dependency fribidi>=0.19.1: found fribidi-1.0.16 => Full dependency gdk-pixbuf2>=2.22.0: found gdk-pixbuf2-2.44.6 => Full dependency gettext-lib>=0.22: found gettext-lib-0.22.5 => Full dependency glib2>=2.4.0: found glib2-2.88.1 => Full dependency glu>=6.0: found glu-9.0.3 => Full dependency graphite2>=1.2: found graphite2-1.3.14nb3 => Full dependency harfbuzz>=2.1.1: found harfbuzz-14.2.0nb1 => Full dependency libiconv>=1.9.1: found libiconv-1.18 => Full dependency jbigkit>=2.0: found jbigkit-2.1nb1 => Full dependency lerc>=4.0.0: found lerc-4.1.0 => Full dependency libX11>=1.5: found libX11-1.8.13 => Full dependency libXau>=1.0: found libXau-1.0.12 => Full dependency libXcomposite>=0.3.1: found libXcomposite-0.4.7 => Full dependency libXcursor>=1.1.1: found libXcursor-1.2.3 => Full dependency libXdamage>=1.0.3: found libXdamage-1.1.7 => Full dependency libXdmcp>=0.99: found libXdmcp-1.1.5 => Full dependency libXext>=1.1: found libXext-1.3.7 => Full dependency libXfixes>=4.0.1: found libXfixes-6.0.2 => Full dependency libXft>=2.1.10: found libXft-2.3.9 => Full dependency libXi>=1.0.0: found libXi-1.8.3 => Full dependency libXinerama>=1.0.1: found libXinerama-1.1.6nb1 => Full dependency libXrandr>=1.1.2: found libXrandr-1.5.5 => Full dependency libXrender>=0.9.2: found libXrender-0.9.12 => Full dependency libXxf86vm>=1.1.0: found libXxf86vm-1.1.7nb1 => Full dependency libdrm>=2.4.15: found libdrm-2.4.131 => Full dependency libffi>=1.20: found libffi-3.5.2 => Full dependency libjpeg-turbo>=1.1.0: found libjpeg-turbo-3.1.4.1 => Full dependency libpciaccess>=0.10.4: found libpciaccess-0.19 => Full dependency libxcb>=1.6: found libxcb-1.17.0 => Full dependency libxshmfence>=1.2: found libxshmfence-1.3.3 => Full dependency lzo>=2.01: found lzo-2.10 => Full dependency pango>=1.6.0: found pango-1.57.1 => Full dependency pangox-compat>=0.0.1: found pangox-compat-0.0.2nb19 => Full dependency pcre2>=10.21: found pcre2-10.47 => Full dependency pixman>=0.40.0: found pixman-0.46.4 => Full dependency png>=1.2.4: found png-1.6.58nb1 => Full dependency shared-mime-info>=0.15: found shared-mime-info-2.4nb7 => Full dependency tiff>=3.6.1: found tiff-4.7.1 => Full dependency xz>=5.0.0: found xz-5.8.3 => Full dependency zlib>=1.1.4: found zlib-1.3.1 ===> Overriding tools for gabedit-2.4.8nb25 ===> Extracting for gabedit-2.4.8nb25 ===> Patching for gabedit-2.4.8nb25 => Applying pkgsrc patches for gabedit-2.4.8nb25 => Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/gabedit/patches/patch-platforms_CONFIG.unix => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/gabedit/patches/patch-platforms_CONFIG.unix Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-platforms_CONFIG.unix,v 1.1 2019/12/21 23:28:02 joerg Exp $ | |--- platforms/CONFIG.unix.orig 2019-12-20 02:12:57.631729445 +0000 |+++ platforms/CONFIG.unix -------------------------- Patching file platforms/CONFIG.unix using Plan A... Hunk #1 succeeded at 19. done => Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/gabedit/patches/patch-src_Common_Gabedit.c => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/gabedit/patches/patch-src_Common_Gabedit.c Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-src_Common_Gabedit.c,v 1.1.1.1 2015/07/22 19:05:10 asau Exp $ | |--- src/Common/Gabedit.c.orig 2013-10-30 12:46:50.000000000 +0000 |+++ src/Common/Gabedit.c -------------------------- Patching file src/Common/Gabedit.c using Plan A... Hunk #1 succeeded at 26. done ===> Creating toolchain wrappers for gabedit-2.4.8nb25 ===> Configuring for gabedit-2.4.8nb25 => Checking for portability problems in extracted files WARNING: [check-portability] => Found $RANDOM: WARNING: [check-portability] utils/Gaussian/SGE/submitG03:76: export GAUSS_SCRDIR=/scratch/$LOGNAME/$RANDOM Explanation: =========================================================================== The variable $RANDOM is not required for a POSIX-conforming shell, and many implementations of /bin/sh do not support it. It should therefore not be used in shell programs that are meant to be portable across a large number of POSIX-like systems. =========================================================================== cd /tmp/work/biology/gabedit/work/GabeditSrc248 && cp platforms/CONFIG.unix CONFIG