=> "/opt/pkg/bin/bmake" ["-C", "/data/jenkins/workspace/pkgsrc-upstream-trunk/math/R-XML", "stage-install", "BATCH=1", "DEPENDS_TARGET=/nonexistent"] ===> Installing for R-XML-3.99.0.18nb2 => Generating pre-install file lists => Creating installation directories * installing *source* package 'XML' ... ** this is package 'XML' version '3.99-0.18' ** package 'XML' successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking how to run the C preprocessor... cpp checking for sed... /usr/bin/sed checking for pkg-config... /home/pbulk/work/math/R-XML/work/.tools/bin/pkg-config checking for xml2-config... /home/pbulk/work/math/R-XML/work/.buildlink/bin/xml2-config USE_XML2 = yes SED_EXTENDED_ARG: -E Minor 15, Patch 1 for 2.15.1 Located parser file -I/opt/pkg/include/libxml2/parser.h Checking for 1.8: -I/opt/pkg/include/libxml2 Using libxml2.* checking for gzopen in -lz... yes checking for xmlParseFile in -lxml2... yes checking for xmlHashSize in -lxml2... yes Using built-in xmlHashSize Checking DTD parsing (presence of externalSubset)... checking for xmlHashSize in -lxml2... (cached) yes Found xmlHashSize checking for xmlOutputBufferCreateBuffer in -lxml2... yes have xmlOutputBufferCreateBuffer() checking for xmlDocDumpFormatMemoryEnc in -lxml2... yes checking for libxml/xmlversion.h... yes Expat: FALSE Checking for return type of xmlHashScan element routine. No return value for xmlHashScan xmlNs has a context field Checking for cetype_t enumeration Using recent version of R with cetype_t enumeration type for encoding checking for xmlsec1-config... no nodegc default xml-debug default Version has XML_WITH_ZLIB Version has xmlHasFeature() **************************************** Configuration information: Libxml settings libxml include directory: -I/opt/pkg/include/libxml2 libxml library directory: -Wl,-R/opt/pkg/lib -L/opt/pkg/lib -R/opt/pkg/lib -lxml2 -L/opt/pkg/lib -R/opt/pkg/lib -lz -L/opt/pkg/lib -lm -lz -lxml2 libxml 2: -DLIBXML2=1 Compilation flags: -DLIBXML -I/opt/pkg/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DNO_CHECKED_ENTITY_FIELD=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 Link flags: -Wl,-R/opt/pkg/lib -L/opt/pkg/lib -R/opt/pkg/lib -lxml2 -L/opt/pkg/lib -R/opt/pkg/lib -lz -L/opt/pkg/lib -lm -lz -lxml2 **************************************** configure: creating ./config.status config.status: creating src/Makevars config.status: creating R/supports.R config.status: creating inst/scripts/RSXML.csh config.status: creating inst/scripts/RSXML.bsh ** libs using C compiler: 'gcc (GCC) 15.2.0' gcc -I"/opt/pkg/lib/R/include" -DNDEBUG -DLIBXML -I/opt/pkg/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DNO_CHECKED_ENTITY_FIELD=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/opt/pkg/include -I/opt/pkg/include/glib-2.0 -I/opt/pkg/include/gio-unix-2.0 -I/opt/pkg/lib/glib-2.0/include -I/usr/include -I/opt/pkg/include/freetype2 -I/opt/pkg/include/harfbuzz -I/opt/pkg/include/ncurses -I/opt/pkg/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/pkg/include -I/opt/pkg/include/glib-2.0 -I/opt/pkg/include/gio-unix-2.0 -I/opt/pkg/lib/glib-2.0/include -I/usr/include -I/opt/pkg/include/freetype2 -I/opt/pkg/include/harfbuzz -I/opt/pkg/include/ncurses -I/opt/pkg/include/libxml2 -c DocParse.c -o DocParse.o DocParse.c: In function 'RS_XML_getDefaultValiditySetting': DocParse.c:67:2: warning: '__xmlDoValidityCheckingDefaultValue' is deprecated: See https://gnome.pages.gitlab.gnome.org/libxml2/html/deprecated.html [-Wdeprecated-declarations] 67 | INTEGER_DATA(ans)[0] = xmlDoValidityCheckingDefaultValue; | ^~~~~~~~~~~~ In file included from DocParse.h:18, from DocParse.c:10: /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/parser.h:1270:16: note: declared here 1270 | XMLPUBFUN int *__xmlDoValidityCheckingDefaultValue(void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ DocParse.c:70:6: warning: '__xmlDoValidityCheckingDefaultValue' is deprecated: See https://gnome.pages.gitlab.gnome.org/libxml2/html/deprecated.html [-Wdeprecated-declarations] 70 | xmlDoValidityCheckingDefaultValue = INTEGER_DATA(val)[0]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/parser.h:1270:16: note: declared here 1270 | XMLPUBFUN int *__xmlDoValidityCheckingDefaultValue(void); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I"/opt/pkg/lib/R/include" -DNDEBUG -DLIBXML -I/opt/pkg/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DNO_CHECKED_ENTITY_FIELD=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/opt/pkg/include -I/opt/pkg/include/glib-2.0 -I/opt/pkg/include/gio-unix-2.0 -I/opt/pkg/lib/glib-2.0/include -I/usr/include -I/opt/pkg/include/freetype2 -I/opt/pkg/include/harfbuzz -I/opt/pkg/include/ncurses -I/opt/pkg/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/pkg/include -I/opt/pkg/include/glib-2.0 -I/opt/pkg/include/gio-unix-2.0 -I/opt/pkg/lib/glib-2.0/include -I/usr/include -I/opt/pkg/include/freetype2 -I/opt/pkg/include/harfbuzz -I/opt/pkg/include/ncurses -I/opt/pkg/include/libxml2 -c EventParse.c -o EventParse.o gcc -I"/opt/pkg/lib/R/include" -DNDEBUG -DLIBXML -I/opt/pkg/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DNO_CHECKED_ENTITY_FIELD=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/opt/pkg/include -I/opt/pkg/include/glib-2.0 -I/opt/pkg/include/gio-unix-2.0 -I/opt/pkg/lib/glib-2.0/include -I/usr/include -I/opt/pkg/include/freetype2 -I/opt/pkg/include/harfbuzz -I/opt/pkg/include/ncurses -I/opt/pkg/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/pkg/include -I/opt/pkg/include/glib-2.0 -I/opt/pkg/include/gio-unix-2.0 -I/opt/pkg/lib/glib-2.0/include -I/usr/include -I/opt/pkg/include/freetype2 -I/opt/pkg/include/harfbuzz -I/opt/pkg/include/ncurses -I/opt/pkg/include/libxml2 -c ExpatParse.c -o ExpatParse.o gcc -I"/opt/pkg/lib/R/include" -DNDEBUG -DLIBXML -I/opt/pkg/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DNO_CHECKED_ENTITY_FIELD=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/opt/pkg/include -I/opt/pkg/include/glib-2.0 -I/opt/pkg/include/gio-unix-2.0 -I/opt/pkg/lib/glib-2.0/include -I/usr/include -I/opt/pkg/include/freetype2 -I/opt/pkg/include/harfbuzz -I/opt/pkg/include/ncurses -I/opt/pkg/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/pkg/include -I/opt/pkg/include/glib-2.0 -I/opt/pkg/include/gio-unix-2.0 -I/opt/pkg/lib/glib-2.0/include -I/usr/include -I/opt/pkg/include/freetype2 -I/opt/pkg/include/harfbuzz -I/opt/pkg/include/ncurses -I/opt/pkg/include/libxml2 -c HTMLParse.c -o HTMLParse.o HTMLParse.c: In function 'RS_XML_dumpHTMLDoc': HTMLParse.c:114:5: warning: '__xmlIndentTreeOutput' is deprecated: See https://gnome.pages.gitlab.gnome.org/libxml2/html/deprecated.html [-Wdeprecated-declarations] 114 | oldIndent = xmlIndentTreeOutput; | ^~~~~~~~~ In file included from DocParse.h:18, from HTMLParse.c:9: /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/parser.h:1286:16: note: declared here 1286 | XMLPUBFUN int *__xmlIndentTreeOutput(void); | ^~~~~~~~~~~~~~~~~~~~~ HTMLParse.c:118:5: warning: '__xmlIndentTreeOutput' is deprecated: See https://gnome.pages.gitlab.gnome.org/libxml2/html/deprecated.html [-Wdeprecated-declarations] 118 | xmlIndentTreeOutput = LOGICAL(indent)[0]; | ^~~~~~~~~~~~~~~~~~~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/parser.h:1286:16: note: declared here 1286 | XMLPUBFUN int *__xmlIndentTreeOutput(void); | ^~~~~~~~~~~~~~~~~~~~~ HTMLParse.c:141:5: warning: '__xmlIndentTreeOutput' is deprecated: See https://gnome.pages.gitlab.gnome.org/libxml2/html/deprecated.html [-Wdeprecated-declarations] 141 | xmlIndentTreeOutput = oldIndent; | ^~~~~~~~~~~~~~~~~~~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/parser.h:1286:16: note: declared here 1286 | XMLPUBFUN int *__xmlIndentTreeOutput(void); | ^~~~~~~~~~~~~~~~~~~~~ HTMLParse.c:143:5: warning: 'use' is deprecated [-Wdeprecated-declarations] 143 | if(xbuf->use > 0) { | ^~ In file included from /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/parser.h:20: /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/tree.h:121:18: note: declared here 121 | unsigned int use XML_DEPRECATED_MEMBER; | ^~~ HTMLParse.c:152:9: warning: 'content' is deprecated [-Wdeprecated-declarations] 152 | ans = ScalarString(ENC_COPY_TO_USER_STRING(XMLCHAR_TO_CHAR(xbuf->content))); | ^~~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/tree.h:115:14: note: declared here 115 | xmlChar *content XML_DEPRECATED_MEMBER; | ^~~~~~~ gcc -I"/opt/pkg/lib/R/include" -DNDEBUG -DLIBXML -I/opt/pkg/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DNO_CHECKED_ENTITY_FIELD=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/opt/pkg/include -I/opt/pkg/include/glib-2.0 -I/opt/pkg/include/gio-unix-2.0 -I/opt/pkg/lib/glib-2.0/include -I/usr/include -I/opt/pkg/include/freetype2 -I/opt/pkg/include/harfbuzz -I/opt/pkg/include/ncurses -I/opt/pkg/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/pkg/include -I/opt/pkg/include/glib-2.0 -I/opt/pkg/include/gio-unix-2.0 -I/opt/pkg/lib/glib-2.0/include -I/usr/include -I/opt/pkg/include/freetype2 -I/opt/pkg/include/harfbuzz -I/opt/pkg/include/ncurses -I/opt/pkg/include/libxml2 -c NodeGC.c -o NodeGC.o gcc -I"/opt/pkg/lib/R/include" -DNDEBUG -DLIBXML -I/opt/pkg/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DNO_CHECKED_ENTITY_FIELD=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/opt/pkg/include -I/opt/pkg/include/glib-2.0 -I/opt/pkg/include/gio-unix-2.0 -I/opt/pkg/lib/glib-2.0/include -I/usr/include -I/opt/pkg/include/freetype2 -I/opt/pkg/include/harfbuzz -I/opt/pkg/include/ncurses -I/opt/pkg/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/pkg/include -I/opt/pkg/include/glib-2.0 -I/opt/pkg/include/gio-unix-2.0 -I/opt/pkg/lib/glib-2.0/include -I/usr/include -I/opt/pkg/include/freetype2 -I/opt/pkg/include/harfbuzz -I/opt/pkg/include/ncurses -I/opt/pkg/include/libxml2 -c RSDTD.c -o RSDTD.o RSDTD.c: In function 'RS_XML_getDTD': RSDTD.c:121:3: warning: 'validate' is deprecated [-Wdeprecated-declarations] 121 | ctxt->validate = 1; | ^~~~ In file included from RSDTD.h:25, from RSDTD.c:13: /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/parser.h:374:9: note: declared here 374 | int validate XML_DEPRECATED_MEMBER; | ^~~~~~~~ RSDTD.c:134:7: warning: 'xmlSkipBlankChars' is deprecated: See https://gnome.pages.gitlab.gnome.org/libxml2/html/deprecated.html [-Wdeprecated-declarations] 134 | SKIP_BLANKS; | ^~~~~~~~~~~ In file included from RSDTD.h:26: /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/parserInternals.h:513:33: note: declared here 513 | XMLPUBFUN int xmlSkipBlankChars (xmlParserCtxt *ctxt); | ^~~~~~~~~~~~~~~~~ RSDTD.c:135:7: warning: 'xmlParseMarkupDecl' is deprecated: See https://gnome.pages.gitlab.gnome.org/libxml2/html/deprecated.html [-Wdeprecated-declarations] 135 | xmlParseMarkupDecl(ctxt); | ^~~~~~~~~~~~~~~~~~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/parserInternals.h:419:25: note: declared here 419 | xmlParseMarkupDecl (xmlParserCtxt *ctxt); | ^~~~~~~~~~~~~~~~~~ RSDTD.c: In function 'RS_XML_createDTDElementContents': RSDTD.c:555:3: warning: 'type' is deprecated [-Wdeprecated-declarations] 555 | INTEGER_DATA(VECTOR_ELT(ans, DTD_CONTENT_TYPE_SLOT))[0] = vals->type; | ^~~~~~~~~~~~ In file included from /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/parser.h:20: /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/tree.h:425:31: note: declared here 425 | xmlElementContentType type XML_DEPRECATED_MEMBER; | ^~~~ RSDTD.c:556:3: warning: 'type' is deprecated [-Wdeprecated-declarations] 556 | SET_ENUM_NAME(ContentTypeNames, vals->type, VECTOR_ELT(ans, DTD_CONTENT_TYPE_SLOT)); | ^~~~~~~~~~~~~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/tree.h:425:31: note: declared here 425 | xmlElementContentType type XML_DEPRECATED_MEMBER; | ^~~~ RSDTD.c:559:3: warning: 'ocur' is deprecated [-Wdeprecated-declarations] 559 | INTEGER_DATA(VECTOR_ELT(ans, DTD_CONTENT_OCCURANCE_SLOT))[0] = vals->ocur; | ^~~~~~~~~~~~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/tree.h:427:31: note: declared here 427 | xmlElementContentOccur ocur XML_DEPRECATED_MEMBER; | ^~~~ RSDTD.c:560:3: warning: 'ocur' is deprecated [-Wdeprecated-declarations] 560 | SET_ENUM_NAME(OccuranceNames, vals->ocur, VECTOR_ELT(ans, DTD_CONTENT_OCCURANCE_SLOT)); | ^~~~~~~~~~~~~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/tree.h:427:31: note: declared here 427 | xmlElementContentOccur ocur XML_DEPRECATED_MEMBER; | ^~~~ RSDTD.c:563:3: warning: 'type' is deprecated [-Wdeprecated-declarations] 563 | if(vals->type == XML_ELEMENT_CONTENT_SEQ && recursive) { | ^~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/tree.h:425:31: note: declared here 425 | xmlElementContentType type XML_DEPRECATED_MEMBER; | ^~~~ RSDTD.c:566:5: warning: 'c1' is deprecated [-Wdeprecated-declarations] 566 | num += (vals->c1 != NULL); | ^~~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/tree.h:431:32: note: declared here 431 | struct _xmlElementContent *c1 XML_DEPRECATED_MEMBER; | ^~ RSDTD.c:568:7: warning: 'c2' is deprecated [-Wdeprecated-declarations] 568 | num += (vals->c2 != NULL); | ^~~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/tree.h:433:32: note: declared here 433 | struct _xmlElementContent *c2 XML_DEPRECATED_MEMBER; | ^~ RSDTD.c:573:7: warning: 'c1' is deprecated [-Wdeprecated-declarations] 573 | if(vals->c1) { | ^~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/tree.h:431:32: note: declared here 431 | struct _xmlElementContent *c1 XML_DEPRECATED_MEMBER; | ^~ RSDTD.c:574:9: warning: 'c1' is deprecated [-Wdeprecated-declarations] 574 | SET_VECTOR_ELT(VECTOR_ELT(ans, DTD_CONTENT_ELEMENTS_SLOT), num++, RS_XML(createDTDElementContents)(vals->c1, el, 1)); | ^~~~~~~~~~~~~~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/tree.h:431:32: note: declared here 431 | struct _xmlElementContent *c1 XML_DEPRECATED_MEMBER; | ^~ RSDTD.c:578:9: warning: 'c2' is deprecated [-Wdeprecated-declarations] 578 | if(vals->c2) { | ^~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/tree.h:433:32: note: declared here 433 | struct _xmlElementContent *c2 XML_DEPRECATED_MEMBER; | ^~ RSDTD.c:579:10: warning: 'c2' is deprecated [-Wdeprecated-declarations] 579 | SET_VECTOR_ELT(VECTOR_ELT(ans, DTD_CONTENT_ELEMENTS_SLOT), num++, RS_XML(createDTDElementContents)(vals->c2, el, 1)); | ^~~~~~~~~~~~~~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/tree.h:433:32: note: declared here 433 | struct _xmlElementContent *c2 XML_DEPRECATED_MEMBER; | ^~ RSDTD.c:583:6: warning: 'name' is deprecated [-Wdeprecated-declarations] 583 | if(vals->name) { | ^~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/tree.h:429:32: note: declared here 429 | const xmlChar *name XML_DEPRECATED_MEMBER; | ^~~~ RSDTD.c:585:9: warning: 'name' is deprecated [-Wdeprecated-declarations] 585 | SET_STRING_ELT(VECTOR_ELT(ans, DTD_CONTENT_ELEMENTS_SLOT), 0, COPY_TO_USER_STRING(XMLCHAR_TO_CHAR(vals->name))); | ^~~~~~~~~~~~~~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/tree.h:429:32: note: declared here 429 | const xmlChar *name XML_DEPRECATED_MEMBER; | ^~~~ RSDTD.c:589:3: warning: 'type' is deprecated [-Wdeprecated-declarations] 589 | switch(vals->type) { | ^~~~~~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/tree.h:425:31: note: declared here 425 | xmlElementContentType type XML_DEPRECATED_MEMBER; | ^~~~ RSDTD.c: In function 'RS_XML_SequenceContent': RSDTD.c:620:3: warning: 'c2' is deprecated [-Wdeprecated-declarations] 620 | xmlElementContentPtr ptr = vals->c2; | ^~~~~~~~~~~~~~~~~~~~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/tree.h:433:32: note: declared here 433 | struct _xmlElementContent *c2 XML_DEPRECATED_MEMBER; | ^~ RSDTD.c:629:5: warning: 'type' is deprecated [-Wdeprecated-declarations] 629 | ok = (ptr->type == XML_ELEMENT_CONTENT_SEQ); | ^~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/tree.h:425:31: note: declared here 425 | xmlElementContentType type XML_DEPRECATED_MEMBER; | ^~~~ RSDTD.c:630:5: warning: 'c2' is deprecated [-Wdeprecated-declarations] 630 | ptr = ptr->c2; | ^~~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/tree.h:433:32: note: declared here 433 | struct _xmlElementContent *c2 XML_DEPRECATED_MEMBER; | ^~ RSDTD.c:636:3: warning: 'c1' is deprecated [-Wdeprecated-declarations] 636 | SET_VECTOR_ELT(ans, 0, RS_XML(createDTDElementContents)(vals->c1, el, 1)); | ^~~~~~~~~~~~~~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/tree.h:431:32: note: declared here 431 | struct _xmlElementContent *c1 XML_DEPRECATED_MEMBER; | ^~ RSDTD.c:638:3: warning: 'c2' is deprecated [-Wdeprecated-declarations] 638 | ptr = vals->c2; | ^~~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/tree.h:433:32: note: declared here 433 | struct _xmlElementContent *c2 XML_DEPRECATED_MEMBER; | ^~ RSDTD.c:642:5: warning: 'c1' is deprecated [-Wdeprecated-declarations] 642 | deep = (ptr->c1 != NULL && ptr->type == XML_ELEMENT_CONTENT_SEQ ); | ^~~~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/tree.h:431:32: note: declared here 431 | struct _xmlElementContent *c1 XML_DEPRECATED_MEMBER; | ^~ RSDTD.c:642:5: warning: 'type' is deprecated [-Wdeprecated-declarations] 642 | deep = (ptr->c1 != NULL && ptr->type == XML_ELEMENT_CONTENT_SEQ ); | ^~~~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/tree.h:425:31: note: declared here 425 | xmlElementContentType type XML_DEPRECATED_MEMBER; | ^~~~ RSDTD.c:643:5: warning: 'c1' is deprecated [-Wdeprecated-declarations] 643 | tmp = RS_XML(createDTDElementContents)( deep ? ptr->c1 : ptr, el, deep); | ^~~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/tree.h:431:32: note: declared here 431 | struct _xmlElementContent *c1 XML_DEPRECATED_MEMBER; | ^~ RSDTD.c:645:5: warning: 'type' is deprecated [-Wdeprecated-declarations] 645 | ok = (ptr->type == XML_ELEMENT_CONTENT_SEQ); | ^~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/tree.h:425:31: note: declared here 425 | xmlElementContentType type XML_DEPRECATED_MEMBER; | ^~~~ RSDTD.c:646:5: warning: 'c2' is deprecated [-Wdeprecated-declarations] 646 | ptr = ptr->c2; | ^~~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/tree.h:433:32: note: declared here 433 | struct _xmlElementContent *c2 XML_DEPRECATED_MEMBER; | ^~ RSDTD.c: In function 'RS_XML_createDTDAttribute': RSDTD.c:745:4: warning: 'tree' is deprecated [-Wdeprecated-declarations] 745 | SET_VECTOR_ELT(ans, DTD_ATTRIBUTE_DEFAULT_VALUE_SLOT, RS_XML(AttributeEnumerationList)(val->tree, val, el)); | ^~~~~~~~~~~~~~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/tree.h:386:29: note: declared here 386 | xmlEnumeration *tree XML_DEPRECATED_MEMBER; | ^~~~ RSDTD.c: In function 'RS_XML_AttributeEnumerationList': RSDTD.c:777:5: warning: 'next' is deprecated [-Wdeprecated-declarations] 777 | tmp = tmp->next; | ^~~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/tree.h:343:32: note: declared here 343 | struct _xmlEnumeration *next XML_DEPRECATED_MEMBER; | ^~~~ RSDTD.c:786:7: warning: 'name' is deprecated [-Wdeprecated-declarations] 786 | SET_STRING_ELT(ans, i, COPY_TO_USER_STRING(XMLCHAR_TO_CHAR(tmp->name))); | ^~~~~~~~~~~~~~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/tree.h:345:31: note: declared here 345 | const xmlChar *name XML_DEPRECATED_MEMBER; | ^~~~ RSDTD.c:787:7: warning: 'next' is deprecated [-Wdeprecated-declarations] 787 | tmp = tmp->next; | ^~~ /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/tree.h:343:32: note: declared here 343 | struct _xmlEnumeration *next XML_DEPRECATED_MEMBER; | ^~~~ gcc -I"/opt/pkg/lib/R/include" -DNDEBUG -DLIBXML -I/opt/pkg/include/libxml2 -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DNO_CHECKED_ENTITY_FIELD=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/opt/pkg/include -I/opt/pkg/include/glib-2.0 -I/opt/pkg/include/gio-unix-2.0 -I/opt/pkg/lib/glib-2.0/include -I/usr/include -I/opt/pkg/include/freetype2 -I/opt/pkg/include/harfbuzz -I/opt/pkg/include/ncurses -I/opt/pkg/include/libxml2 -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/pkg/include -I/opt/pkg/include/glib-2.0 -I/opt/pkg/include/gio-unix-2.0 -I/opt/pkg/lib/glib-2.0/include -I/usr/include -I/opt/pkg/include/freetype2 -I/opt/pkg/include/harfbuzz -I/opt/pkg/include/ncurses -I/opt/pkg/include/libxml2 -c RUtils.c -o RUtils.o RUtils.c: In function 'RS_XML_invokeFunction': RUtils.c:35:42: error: implicit declaration of function 'OBJECT' [-Wimplicit-function-declaration] 35 | if(context && TYPEOF(fun) == CLOSXP && OBJECT(fun) && R_isInstanceOf(fun, XML_PARSE_CONTEXT_FUNCTION)) | ^~~~~~ RUtils.c: In function 'RS_XML_SubstituteEntitiesDefault': RUtils.c:142:5: warning: 'xmlSubstituteEntitiesDefault' is deprecated: See https://gnome.pages.gitlab.gnome.org/libxml2/html/deprecated.html [-Wdeprecated-declarations] 142 | value = xmlSubstituteEntitiesDefault(LOGICAL_DATA(replaceEntities)[0]); | ^~~~~ In file included from Utils.h:17, from RUtils.c:1: /home/pbulk/work/math/R-XML/work/.buildlink/include/libxml2/libxml/parser.h:1415:17: note: declared here 1415 | xmlSubstituteEntitiesDefault(int val); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ *** Error code 1 Stop. make: stopped making "all" in /home/pbulk/work/math/R-XML/work/XML/src ERROR: compilation failed for package 'XML' * removing '/home/pbulk/work/math/R-XML/work/.destdir/opt/pkg/lib/R/library/XML' *** Error code 1 Stop. bmake[1]: stopped making "stage-install" in /data/jenkins/workspace/pkgsrc-upstream-trunk/math/R-XML *** Error code 1 Stop. bmake: stopped making "stage-install" in /data/jenkins/workspace/pkgsrc-upstream-trunk/math/R-XML