=> "/opt/pkg/bin/bmake" ["-C", "/data/jenkins/workspace/pkgsrc-upstream-trunk/math/R-igraph", "stage-install", "BATCH=1", "DEPENDS_TARGET=/nonexistent"] ===> Installing for R-igraph-2.1.4nb2 => Generating pre-install file lists => Creating installation directories * installing *source* package 'igraph' ... ** this is package 'igraph' version '2.1.4' file 'src/vendor/cigraph/vendor/plfit/hzeta.c' has the wrong MD5 checksum ** using staged installation libxml2 include directories: -I/opt/pkg/include/libxml2 libxml2 library link flags: -Wl,-R/opt/pkg/lib -L/opt/pkg/lib -R/opt/pkg/lib -lxml2 -L/opt/pkg/lib -R/opt/pkg/lib -lz -L/opt/pkg/lib -lm Using vendored GLPK ** libs using C compiler: 'gcc (GCC) 15.2.0' using C++ compiler: 'g++ (GCC) 15.2.0' g++ -std=gnu++20 -I"/opt/pkg/lib/R/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/opt/pkg/include/libxml2 -DHAVE_LIBXML -Ivendor/cigraph/vendor/glpk -Ivendor/cigraph/vendor/glpk/env -Ivendor/cigraph/vendor/glpk/minisat -Ivendor/cigraph/vendor/glpk/misc -Ivendor/cigraph/vendor/glpk/draft -Ivendor/cigraph/vendor/glpk/npp -Ivendor/cigraph/vendor/glpk/api -Ivendor/cigraph/vendor/glpk/mpl -Ivendor/cigraph/vendor/glpk/bflib -Ivendor/cigraph/vendor/glpk/amd -Ivendor/cigraph/vendor/glpk/simplex -Ivendor/cigraph/vendor/glpk/colamd -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/opt/pkg/lib/R/library/cpp11/include' -I/opt/pkg/include -I/opt/pkg/include/glib-2.0 -I/opt/pkg/include/gio-unix-2.0 -I/opt/pkg/lib/glib-2.0/include -I/usr/include -I/opt/pkg/include/freetype2 -I/opt/pkg/include/harfbuzz -I/opt/pkg/include/ncurses -I/opt/pkg/include/libxml2 -fvisibility=hidden -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/pkg/include -I/opt/pkg/include/glib-2.0 -I/opt/pkg/include/gio-unix-2.0 -I/opt/pkg/lib/glib-2.0/include -I/usr/include -I/opt/pkg/include/freetype2 -I/opt/pkg/include/harfbuzz -I/opt/pkg/include/ncurses -I/opt/pkg/include/libxml2 -c cpp11.cpp -o cpp11.o g++ -std=gnu++20 -I"/opt/pkg/lib/R/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/opt/pkg/include/libxml2 -DHAVE_LIBXML -Ivendor/cigraph/vendor/glpk -Ivendor/cigraph/vendor/glpk/env -Ivendor/cigraph/vendor/glpk/minisat -Ivendor/cigraph/vendor/glpk/misc -Ivendor/cigraph/vendor/glpk/draft -Ivendor/cigraph/vendor/glpk/npp -Ivendor/cigraph/vendor/glpk/api -Ivendor/cigraph/vendor/glpk/mpl -Ivendor/cigraph/vendor/glpk/bflib -Ivendor/cigraph/vendor/glpk/amd -Ivendor/cigraph/vendor/glpk/simplex -Ivendor/cigraph/vendor/glpk/colamd -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/opt/pkg/lib/R/library/cpp11/include' -I/opt/pkg/include -I/opt/pkg/include/glib-2.0 -I/opt/pkg/include/gio-unix-2.0 -I/opt/pkg/lib/glib-2.0/include -I/usr/include -I/opt/pkg/include/freetype2 -I/opt/pkg/include/harfbuzz -I/opt/pkg/include/ncurses -I/opt/pkg/include/libxml2 -fvisibility=hidden -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/pkg/include -I/opt/pkg/include/glib-2.0 -I/opt/pkg/include/gio-unix-2.0 -I/opt/pkg/lib/glib-2.0/include -I/usr/include -I/opt/pkg/include/freetype2 -I/opt/pkg/include/harfbuzz -I/opt/pkg/include/ncurses -I/opt/pkg/include/libxml2 -c cpprinterface.cpp -o cpprinterface.o g++ -std=gnu++20 -I"/opt/pkg/lib/R/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/opt/pkg/include/libxml2 -DHAVE_LIBXML -Ivendor/cigraph/vendor/glpk -Ivendor/cigraph/vendor/glpk/env -Ivendor/cigraph/vendor/glpk/minisat -Ivendor/cigraph/vendor/glpk/misc -Ivendor/cigraph/vendor/glpk/draft -Ivendor/cigraph/vendor/glpk/npp -Ivendor/cigraph/vendor/glpk/api -Ivendor/cigraph/vendor/glpk/mpl -Ivendor/cigraph/vendor/glpk/bflib -Ivendor/cigraph/vendor/glpk/amd -Ivendor/cigraph/vendor/glpk/simplex -Ivendor/cigraph/vendor/glpk/colamd -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/opt/pkg/lib/R/library/cpp11/include' -I/opt/pkg/include -I/opt/pkg/include/glib-2.0 -I/opt/pkg/include/gio-unix-2.0 -I/opt/pkg/lib/glib-2.0/include -I/usr/include -I/opt/pkg/include/freetype2 -I/opt/pkg/include/harfbuzz -I/opt/pkg/include/ncurses -I/opt/pkg/include/libxml2 -fvisibility=hidden -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/pkg/include -I/opt/pkg/include/glib-2.0 -I/opt/pkg/include/gio-unix-2.0 -I/opt/pkg/lib/glib-2.0/include -I/usr/include -I/opt/pkg/include/freetype2 -I/opt/pkg/include/harfbuzz -I/opt/pkg/include/ncurses -I/opt/pkg/include/libxml2 -c init.cpp -o init.o gcc -I"/opt/pkg/lib/R/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/opt/pkg/include/libxml2 -DHAVE_LIBXML -Ivendor/cigraph/vendor/glpk -Ivendor/cigraph/vendor/glpk/env -Ivendor/cigraph/vendor/glpk/minisat -Ivendor/cigraph/vendor/glpk/misc -Ivendor/cigraph/vendor/glpk/draft -Ivendor/cigraph/vendor/glpk/npp -Ivendor/cigraph/vendor/glpk/api -Ivendor/cigraph/vendor/glpk/mpl -Ivendor/cigraph/vendor/glpk/bflib -Ivendor/cigraph/vendor/glpk/amd -Ivendor/cigraph/vendor/glpk/simplex -Ivendor/cigraph/vendor/glpk/colamd -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/opt/pkg/lib/R/library/cpp11/include' -I/opt/pkg/include -I/opt/pkg/include/glib-2.0 -I/opt/pkg/include/gio-unix-2.0 -I/opt/pkg/lib/glib-2.0/include -I/usr/include -I/opt/pkg/include/freetype2 -I/opt/pkg/include/harfbuzz -I/opt/pkg/include/ncurses -I/opt/pkg/include/libxml2 -fvisibility=hidden -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/pkg/include -I/opt/pkg/include/glib-2.0 -I/opt/pkg/include/gio-unix-2.0 -I/opt/pkg/lib/glib-2.0/include -I/usr/include -I/opt/pkg/include/freetype2 -I/opt/pkg/include/harfbuzz -I/opt/pkg/include/ncurses -I/opt/pkg/include/libxml2 -c rinterface.c -o rinterface.o gcc -I"/opt/pkg/lib/R/include" -DNDEBUG -DUSING_R -I. -Ivendor -Ivendor/cigraph/src -Ivendor/cigraph/include -Ivendor/cigraph/vendor -Ivendor/io/parsers -I/opt/pkg/include/libxml2 -DHAVE_LIBXML -Ivendor/cigraph/vendor/glpk -Ivendor/cigraph/vendor/glpk/env -Ivendor/cigraph/vendor/glpk/minisat -Ivendor/cigraph/vendor/glpk/misc -Ivendor/cigraph/vendor/glpk/draft -Ivendor/cigraph/vendor/glpk/npp -Ivendor/cigraph/vendor/glpk/api -Ivendor/cigraph/vendor/glpk/mpl -Ivendor/cigraph/vendor/glpk/bflib -Ivendor/cigraph/vendor/glpk/amd -Ivendor/cigraph/vendor/glpk/simplex -Ivendor/cigraph/vendor/glpk/colamd -DNDEBUG -DNTIMER -DNPRINT -DIGRAPH_THREAD_LOCAL= -DPRPACK_IGRAPH_SUPPORT -DHAVE_GFORTRAN=1 -D_GNU_SOURCE=1 -I'/opt/pkg/lib/R/library/cpp11/include' -I/opt/pkg/include -I/opt/pkg/include/glib-2.0 -I/opt/pkg/include/gio-unix-2.0 -I/opt/pkg/lib/glib-2.0/include -I/usr/include -I/opt/pkg/include/freetype2 -I/opt/pkg/include/harfbuzz -I/opt/pkg/include/ncurses -I/opt/pkg/include/libxml2 -fvisibility=hidden -fPIC -pipe -O2 -msave-args -fno-aggressive-loop-optimizations -pthread -I/opt/pkg/include -I/opt/pkg/include/glib-2.0 -I/opt/pkg/include/gio-unix-2.0 -I/opt/pkg/lib/glib-2.0/include -I/usr/include -I/opt/pkg/include/freetype2 -I/opt/pkg/include/harfbuzz -I/opt/pkg/include/ncurses -I/opt/pkg/include/libxml2 -c rinterface_extra.c -o rinterface_extra.o rinterface_extra.c: In function 'R_igraph_altrep_length': rinterface_extra.c:2411:11: error: implicit declaration of function 'Rf_findVar'; did you mean 'Rf_findFun'? [-Wimplicit-function-declaration] 2411 | SEXP xp=Rf_findVar(Rf_install("igraph"), R_altrep_data1(vec)); | ^~~~~~~~~~ | Rf_findFun rinterface_extra.c:2411:11: error: initialization of 'SEXP' {aka 'struct SEXPREC *'} from 'int' makes pointer from integer without a cast [-Wint-conversion] rinterface_extra.c: In function 'R_igraph_altrep_from': rinterface_extra.c:2420:13: error: initialization of 'SEXP' {aka 'struct SEXPREC *'} from 'int' makes pointer from integer without a cast [-Wint-conversion] 2420 | SEXP xp=Rf_findVar(Rf_install("igraph"), R_altrep_data1(vec)); | ^~~~~~~~~~ rinterface_extra.c: In function 'R_igraph_altrep_to': rinterface_extra.c:2435:13: error: initialization of 'SEXP' {aka 'struct SEXPREC *'} from 'int' makes pointer from integer without a cast [-Wint-conversion] 2435 | SEXP xp=Rf_findVar(Rf_install("igraph"), R_altrep_data1(vec)); | ^~~~~~~~~~ rinterface_extra.c: In function 'R_igraph_get_pointer': rinterface_extra.c:2868:11: error: initialization of 'SEXP' {aka 'struct SEXPREC *'} from 'int' makes pointer from integer without a cast [-Wint-conversion] 2868 | SEXP xp=Rf_findVar(Rf_install("igraph"), R_igraph_graph_env(graph)); | ^~~~~~~~~~ rinterface_extra.c:2871:7: error: assignment to 'SEXP' {aka 'struct SEXPREC *'} from 'int' makes pointer from integer without a cast [-Wint-conversion] 2871 | xp=Rf_findVar(Rf_install("igraph"), R_igraph_graph_env(graph)); | ^ rinterface_extra.c:2878:7: error: assignment to 'SEXP' {aka 'struct SEXPREC *'} from 'int' makes pointer from integer without a cast [-Wint-conversion] 2878 | xp=Rf_findVar(Rf_install("igraph"), R_igraph_graph_env(graph)); | ^ rinterface_extra.c: In function 'R_igraph_graph_version': rinterface_extra.c:8654:14: error: initialization of 'SEXP' {aka 'struct SEXPREC *'} from 'int' makes pointer from integer without a cast [-Wint-conversion] 8654 | SEXP ver = Rf_findVar(Rf_install(R_IGRAPH_VERSION_VAR), R_igraph_graph_env(graph)); | ^~~~~~~~~~ rinterface_extra.c: In function 'R_igraph_add_env': rinterface_extra.c:8701:5: error: implicit declaration of function 'SET_ATTRIB'; did you mean 'SET_ATTR'? [-Wimplicit-function-declaration] 8701 | SET_ATTRIB(result, Rf_duplicate(ATTRIB(graph))); | ^~~~~~~~~~ | SET_ATTR rinterface_extra.c:8701:37: error: implicit declaration of function 'ATTRIB' [-Wimplicit-function-declaration] 8701 | SET_ATTRIB(result, Rf_duplicate(ATTRIB(graph))); | ^~~~~~ rinterface_extra.c:8701:37: error: passing argument 1 of 'Rf_duplicate' makes pointer from integer without a cast [-Wint-conversion] 8701 | SET_ATTRIB(result, Rf_duplicate(ATTRIB(graph))); | ^~~~~~~~~~~~~ | | | int In file included from rinterface.h:30, from rinterface_extra.c:24: /tmp/work/math/R-igraph/work/.buildlink/lib/R/include/Rinternals.h:489:19: note: expected 'SEXP' {aka 'struct SEXPREC *'} but argument is of type 'int' 489 | SEXP Rf_duplicate(SEXP); | ^~~~ rinterface_extra.c:8705:44: error: implicit declaration of function 'Rf_allocSExp'; did you mean 'Rf_allocList'? [-Wimplicit-function-declaration] 8705 | SET_VECTOR_ELT(result, igraph_t_idx_env, Rf_allocSExp(ENVSXP)); | ^~~~~~~~~~~~ | Rf_allocList rinterface_extra.c:8705:44: error: passing argument 3 of 'SET_VECTOR_ELT' makes pointer from integer without a cast [-Wint-conversion] 8705 | SET_VECTOR_ELT(result, igraph_t_idx_env, Rf_allocSExp(ENVSXP)); | ^~~~~~~~~~~~~~~~~~~~ | | | int /tmp/work/math/R-igraph/work/.buildlink/lib/R/include/Rinternals.h:287:46: note: expected 'SEXP' {aka 'struct SEXPREC *'} but argument is of type 'int' 287 | SEXP SET_VECTOR_ELT(SEXP x, R_xlen_t i, SEXP v); | ~~~~~^ rinterface_extra.c: In function 'R_igraph_get_graph_id': rinterface_extra.c:8727:10: error: returning 'int' from a function with return type 'SEXP' {aka 'struct SEXPREC *'} makes pointer from integer without a cast [-Wint-conversion] 8727 | return Rf_findVar(Rf_install("myid"), R_igraph_graph_env(graph)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ *** Error code 1 Stop. make: stopped making "all" in /tmp/work/math/R-igraph/work/igraph/src ERROR: compilation failed for package 'igraph' * removing '/tmp/work/math/R-igraph/work/.destdir/opt/pkg/lib/R/library/igraph' *** Error code 1 Stop. bmake[1]: stopped making "stage-install" in /data/jenkins/workspace/pkgsrc-upstream-trunk/math/R-igraph *** Error code 1 Stop. bmake: stopped making "stage-install" in /data/jenkins/workspace/pkgsrc-upstream-trunk/math/R-igraph