=> "/opt/pkg/bin/bmake" ["-C", "/data/jenkins/workspace/pkgsrc-upstream-trunk/biology/openbabel", "configure", "BATCH=1", "DEPENDS_TARGET=/nonexistent"]
=> Checksum BLAKE2s OK for openbabel-3.2.0.tar.gz
=> Checksum SHA512 OK for openbabel-3.2.0.tar.gz
===> Installing dependencies for openbabel-3.2.0
==========================================================================
The supported build options for openbabel are:

	wxwidgets

You can select which build options to use by setting PKG_DEFAULT_OPTIONS
or the following variable.  Its current value is shown:

	PKG_OPTIONS.openbabel (not defined)

==========================================================================
=> Tool dependency cmake>=0: found cmake-4.4.2
=> Tool dependency glib2-tools-[0-9]*: found glib2-tools-2.88.3
=> Tool dependency perl>=5.0: found perl-5.44.0
=> Tool dependency pkgconf-[0-9]*: found pkgconf-3.0.5
=> Tool dependency cwrappers>=20150314: found cwrappers-20220403
=> Tool dependency checkperms>=1.1: found checkperms-1.12
=> Build dependency boost-headers-1.91.*: found boost-headers-1.91.0
=> Build dependency eigen3>=3.1.2: found eigen3-3.4.0nb1
=> Build dependency rapidjson>=1.1.0: found rapidjson-1.1.0.20250205
=> Full dependency boost-libs-1.91.*: found boost-libs-1.91.0
=> Full dependency boost-libs>=1.91.0: found boost-libs-1.91.0
=> Full dependency cairo>=1.18.4nb3: found cairo-1.18.4nb3
=> Full dependency coordgenlibs>=1.4.2nb11: found coordgenlibs-1.4.2nb11
=> Full dependency libxml2>=2.14.6nb2: found libxml2-2.15.1
=> Full dependency maeparser>=1.3.2nb2: found maeparser-1.3.2nb2
=> Full dependency zlib>=1.2.3: found zlib-1.3.1
=> Build dependency xcb-proto>=1.4: found xcb-proto-1.17.0nb6
=> Build dependency xorgproto>=2016.1: found xorgproto-2025.1
=> Full dependency brotli>=1.0.1: found brotli-1.2.0
=> Full dependency bzip2>=1.0.1: found bzip2-1.0.8
=> Full dependency expat>=1.95.7: found expat-2.8.2
=> Full dependency fontconfig>=2.11.91: found fontconfig-2.18.2
=> Full dependency freetype2>=2.13.0: found freetype2-2.14.3
=> Full dependency gettext-lib>=0.22: found gettext-lib-1.0
=> Full dependency glib2>=2.4.0: found glib2-2.88.3
=> Full dependency libiconv>=1.9.1: found libiconv-1.19
=> Full dependency libX11>=1.1: found libX11-1.8.13
=> Full dependency libXau>=1.0: found libXau-1.0.12
=> Full dependency libXdmcp>=0.99: found libXdmcp-1.1.5
=> Full dependency libXext>=0.99.0: found libXext-1.3.7
=> Full dependency libXrender>=0.9.2: found libXrender-0.9.12
=> Full dependency libffi>=1.20: found libffi-3.7.1
=> Full dependency libxcb>=1.6: found libxcb-1.17.0
=> Full dependency lzo>=2.01: found lzo-2.10
=> Full dependency pcre2>=10.21: found pcre2-10.47
=> Full dependency pixman>=0.40.0: found pixman-0.46.4
=> Full dependency png>=1.2.4: found png-1.6.58nb1
===> Overriding tools for openbabel-3.2.0
===> Extracting for openbabel-3.2.0
===> Patching for openbabel-3.2.0
=> Applying pkgsrc patches for openbabel-3.2.0
=> Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/openbabel/patches/patch-CMakeLists.txt
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/openbabel/patches/patch-CMakeLists.txt
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-CMakeLists.txt,v 1.3 2026/06/22 13:20:21 pin Exp $
|
|Remove obsolete variable.
|
|--- CMakeLists.txt.orig	2026-06-22 05:11:30.535235428 +0000
|+++ CMakeLists.txt
--------------------------
Patching file CMakeLists.txt using Plan A...
Hunk #1 succeeded at 318.
Hunk #2 succeeded at 482.
done
=> Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/openbabel/patches/patch-tools_CMakeLists.txt
=> Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/biology/openbabel/patches/patch-tools_CMakeLists.txt
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-tools_CMakeLists.txt,v 1.2 2026/06/22 13:20:21 pin Exp $
|
|Remove obsolete variable.
|
|--- tools/CMakeLists.txt.orig	2026-06-22 05:15:09.677983564 +0000
|+++ tools/CMakeLists.txt
--------------------------
Patching file tools/CMakeLists.txt using Plan A...
Hunk #1 succeeded at 5.
done
===> Creating toolchain wrappers for openbabel-3.2.0
===> Configuring for openbabel-3.2.0
=> Adding run-time search paths to pkg-config files.
=> Checking for portability problems in extracted files
-- The C compiler identification is GNU 14.3.0
-- The CXX compiler identification is GNU 14.3.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /tmp/work/biology/openbabel/work/.cwrapper/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /tmp/work/biology/openbabel/work/.cwrapper/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Using included inchi library.
-- Found LibXml2: /tmp/work/biology/openbabel/work/.buildlink/lib/libxml2.so (found version "2.15.1")
-- Found ZLIB: /tmp/work/biology/openbabel/work/.buildlink/lib/libz.so (found version "1.3.1")
-- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) 
-- Looking for conio.h
-- Looking for conio.h - not found
-- Looking for sys/time.h
-- Looking for sys/time.h - found
-- Looking for time.h
-- Looking for time.h - found
-- Looking for strings.h
-- Looking for strings.h - found
-- Looking for regex.h
-- Looking for regex.h - found
-- Looking for C++ include sstream
-- Looking for C++ include sstream - found
-- Looking for rint
-- Looking for rint - not found
-- Looking for snprintf
-- Looking for snprintf - found
-- Looking for sranddev
-- Looking for sranddev - not found
-- Looking for strcasecmp
-- Looking for strcasecmp - found
-- Looking for strncasecmp
-- Looking for strncasecmp - found
-- Looking for xdrstdio_create
-- Looking for xdrstdio_create - not found
-- Looking for dlopen in dl
-- Looking for dlopen in dl - found
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of clock_t
-- Check size of clock_t - done
-- Performing Test SCANDIR_NEEDS_CONST
-- Performing Test SCANDIR_NEEDS_CONST - Failed
-- Performing Test HAVE_GCC_VISIBILITY
-- Performing Test HAVE_GCC_VISIBILITY - Success
Using built-in specs.
COLLECT_GCC=/tmp/work/biology/openbabel/work/.gcc/bin/gcc
COLLECT_LTO_WRAPPER=/opt/tools/gcc14/libexec/gcc/x86_64-sun-solaris2.11/14.3.0/lto-wrapper
Target: x86_64-sun-solaris2.11
Configured with: ../gcc-ef82a73d9c34b24d5e041872d56c844313bca2a5/configure --with-local-prefix=/opt/tools/gcc14 --enable-languages=c,c++,fortran,objc,lto --enable-__cxa_atexit --enable-initfini-array --disable-nls --disable-libitm --with-gnu-as --with-as=/opt/tools/bin/gas --without-gnu-ld --with-ld=/bin/ld --with-zstd=no --prefix=/opt/tools/gcc14 --build=x86_64-sun-solaris2.11 --host=x86_64-sun-solaris2.11 --infodir=/opt/tools/gcc14/info --mandir=/opt/tools/gcc14/man
Thread model: posix
Supported LTO compression algorithms: zlib
gcc version 14.3.0 (GCC) 
CMake Warning (policy) at CMakeLists.txt:319 (find_package):
  Policy CMP0167 is not set: The FindBoost module is removed.  Run "cmake
  --help-policy CMP0167" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.
This warning is for project developers.  Use -Wno-author or -Wno-policy to
suppress it.

-- Found Boost: /tmp/work/biology/openbabel/work/.buildlink/lib/cmake/Boost-1.91.0/BoostConfig.cmake (found version "1.91.0") found components: program_options iostreams
CMake Warning (policy) at CMakeLists.txt:483 (find_package):
  Policy CMP0167 is not set: The FindBoost module is removed.  Run "cmake
  --help-policy CMP0167" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.
This warning is for project developers.  Use -Wno-author or -Wno-policy to
suppress it.

-- Found Boost: /tmp/work/biology/openbabel/work/.buildlink/lib/cmake/Boost-1.91.0/BoostConfig.cmake (found version "1.91.0") found components: filesystem iostreams unit_test_framework
-- maeparser include dir set as '/tmp/work/biology/openbabel/work/.buildlink/include'
-- maeparser libraries set as '/tmp/work/biology/openbabel/work/.buildlink/lib/libmaeparser.so'
-- Maestro formats will be supported. Using MaeParser libraries at /tmp/work/biology/openbabel/work/.buildlink/lib/libmaeparser.so.
-- coordgen include dir set as /tmp/work/biology/openbabel/work/.buildlink/include
-- coordgen libraries set as '/tmp/work/biology/openbabel/work/.buildlink/lib/libcoordgen.so'
-- Coordinate generation with Coordgen will be supported. Using Coordgen libraries at /tmp/work/biology/openbabel/work/.buildlink/lib/libcoordgen.so.
-- Found PkgConfig: /tmp/work/biology/openbabel/work/.tools/bin/pkg-config (found version "3.0.5")
-- Found RapidJSON: /tmp/work/biology/openbabel/work/.buildlink/include (found suitable version "1.1.0", minimum required is "1.1.0")
-- JSON formats will be supported. Using RapidJSON 1.1.0 at /tmp/work/biology/openbabel/work/.buildlink/include
-- Checking for module 'cairo'
--   Found cairo, version 1.18.4
-- Found Cairo: /tmp/work/biology/openbabel/work/.buildlink/lib/libcairo.so
-- Cairo found. PNG output will be supported.
-- Found Perl: /tmp/work/biology/openbabel/work/.tools/bin/perl (found version "5.44.0")
CMake Warning (policy) at src/CMakeLists.txt:6 (find_package):
  Policy CMP0167 is not set: The FindBoost module is removed.  Run "cmake
  --help-policy CMP0167" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.
This warning is for project developers.  Use -Wno-author or -Wno-policy to
suppress it.

-- Could NOT find Boost: missing: system (found /tmp/work/biology/openbabel/work/.buildlink/lib/cmake/Boost-1.91.0/BoostConfig.cmake (found suitable version "1.91.0", minimum required is "1.45.0"))
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
CMake Warning (policy) at tools/CMakeLists.txt:6 (find_package):
  Policy CMP0167 is not set: The FindBoost module is removed.  Run "cmake
  --help-policy CMP0167" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.
This warning is for project developers.  Use -Wno-author or -Wno-policy to
suppress it.

-- Found Boost: /tmp/work/biology/openbabel/work/.buildlink/lib/cmake/Boost-1.91.0/BoostConfig.cmake (found version "1.91.0") found components: program_options iostreams
-- Looking for getopt
-- Looking for getopt - found
-- GUI will not be built
-- Found Python: /opt/pkg/bin/python3.13 (found version "3.13.14") found components: Interpreter
-- Configuring done (13.0s)
-- Generating done (1.7s)
CMake Warning (unused-cli):
  Manually-specified variables were not used by the project:

    FETCHCONTENT_FULLY_DISCONNECTED
    LLVM_CONFIG


-- Build files have been written to: /tmp/work/biology/openbabel/work/openbabel-openbabel-3-2-0/cmake-pkgsrc-build