=> "/opt/pkg/bin/bmake" ["-C", "/data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-scipy", "configure", "PYTHON_VERSION_REQD=315", "BATCH=1", "DEPENDS_TARGET=/nonexistent"] => Checksum BLAKE2s OK for scipy-1.18.1.tar.gz => Checksum SHA512 OK for scipy-1.18.1.tar.gz ===> Installing dependencies for py315-scipy-1.18.1 ========================================================================== The supported build options for py315-scipy are: suitesparse You can select which build options to use by setting PKG_DEFAULT_OPTIONS or the following variable. Its current value is shown: PKG_OPTIONS.scipy (not defined) ========================================================================== ========================================================================== The following variables will affect the build process of this package, py315-scipy-1.18.1. Their current value is shown below: * PKGSRC_BLAS_TYPES = netlib openblas openblas_pthread openblas_openmp * PYTHON_VERSION_DEFAULT = 313 Based on these variables, the following variables have been set: * BLAS_INCLUDES = -I/opt/pkg/include/netlib * BLAS_LIBS = -lblas * BLAS_PC = blas * BLAS_TYPE = netlib * CBLAS_LIBS = -lcblas -lblas * CBLAS_PC = cblas * LAPACKE_LIBS = -llapacke -llapack -lblas * LAPACKE_PC = lapacke * LAPACK_LIBS = -llapack -lblas * LAPACK_PC = lapack * PYPACKAGE = python315 You may want to abort the process now with CTRL-C and change the value of variables in the first group before continuing. Be sure to run `/opt/pkg/bin/bmake clean' after the changes. ========================================================================== => Tool dependency py315-cython>=3.0.8: found py315-cython-3.3.0nb1 => Tool dependency meson>=1.5.0: found meson-1.12.1 => Tool dependency py315-meson_python>=0.15.0: found py315-meson_python-0.22.1 => Tool dependency py315-wheel-[0-9]*: found py315-wheel-0.48.0 => Tool dependency py315-pythran>=0.14.0: found py315-pythran-0.19.0 => Tool dependency py315-build>=0: found py315-build-1.6.1 => Tool dependency py315-installer>=0.7.0nb1: found py315-installer-1.0.1 => Tool dependency pkgconf-[0-9]*: found pkgconf-3.0.8 => Tool dependency cwrappers>=20150314: found cwrappers-20220403 => Tool dependency checkperms>=1.1: found checkperms-1.12 => Build dependency py315-pybind11>=2.5.0: found py315-pybind11-3.1.0 => Build dependency py315-pythran>=0.10.0: found py315-pythran-0.19.0 => Full dependency cblas>=3.9.1nb1: found cblas-3.12.1 => Full dependency fftw>=3.3.10nb1: found fftw-3.3.11 => Full dependency lapack>=3.9.0nb1: found lapack-3.12.1 => Full dependency lapacke>=3.9.1nb2: found lapacke-3.12.1 => Full dependency py315-cython>=0.12.1: found py315-cython-3.3.0nb1 => Full dependency py315-numpy>=2.0.0: found py315-numpy-2.5.4 => Build dependency python315>=3.15.0: found python315-3.15.0 => Full dependency blas>=3.9.0: found blas-3.12.1 ===> Overriding tools for py315-scipy-1.18.1 ===> Extracting for py315-scipy-1.18.1 ===> Patching for py315-scipy-1.18.1 => Applying pkgsrc patches for py315-scipy-1.18.1 => Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-scipy/patches/patch-scipy_ndimage_src___rank__filter__1d.cpp => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-scipy/patches/patch-scipy_ndimage_src___rank__filter__1d.cpp Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-scipy_ndimage_src___rank__filter__1d.cpp,v 1.2 2026/01/11 08:15:05 adam Exp $ | |Avoid WRAP conflict from sys/termios.h on illumos. | |--- scipy/ndimage/src/_rank_filter_1d.cpp.orig 2026-01-10 17:57:13.000000000 +0000 |+++ scipy/ndimage/src/_rank_filter_1d.cpp -------------------------- Patching file scipy/ndimage/src/_rank_filter_1d.cpp using Plan A... Hunk #1 succeeded at 48. done => Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-scipy/patches/patch-scipy_spatial___ckdtree.pyx => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-scipy/patches/patch-scipy_spatial___ckdtree.pyx Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-scipy_spatial___ckdtree.pyx,v 1.5 2026/06/30 09:57:45 adam Exp $ | |Fix missing isnan/isinf. |Build breaks on at least NetBSD-10.99.4-aarch64 without this: | |scipy/spatial/_ckdtree.cxx: In function 'PyObject* __pyx_pf_5scipy_7spatial_8_ckdtree_7cKDTree_16count_neighbors(__pyx_obj_5scipy_7spatial_8_ckdtree_cKDTree*, __pyx_obj_5scipy_7spatial_8_ckdtree_cKDTree*, PyObject*, __pyx_t_5numpy_float64_t, PyObject*, int)': |scipy/spatial/_ckdtree.cxx:13392:19: error: 'isinf' was not declared in this scope; did you mean 'std::isinf'? | |--- scipy/spatial/_ckdtree.pyx.orig 2026-06-19 03:00:59.000000000 +0000 |+++ scipy/spatial/_ckdtree.pyx -------------------------- Patching file scipy/spatial/_ckdtree.pyx using Plan A... Hunk #1 succeeded at 17. done => Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-scipy/patches/patch-scipy_special_boost__special__functions.h => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-scipy/patches/patch-scipy_special_boost__special__functions.h Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-scipy_special_boost__special__functions.h,v 1.3 2026/01/11 08:15:05 adam Exp $ | |Fix build. | |--- scipy/special/boost_special_functions.h.orig 2026-01-10 17:57:13.000000000 +0000 |+++ scipy/special/boost_special_functions.h -------------------------- Patching file scipy/special/boost_special_functions.h using Plan A... Hunk #1 succeeded at 48 (offset 1 line). done => Verifying /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-scipy/patches/patch-scipy_special_wright.hh => Applying pkgsrc patch /data/jenkins/workspace/pkgsrc-upstream-trunk/math/py-scipy/patches/patch-scipy_special_wright.hh Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-scipy_special_wright.hh,v 1.1 2023/05/08 20:39:18 tnn Exp $ | |Fix missing isnan/isinf. | |--- scipy/special/wright.hh.orig 1970-01-01 00:00:00.000000000 +0000 |+++ scipy/special/wright.hh -------------------------- Patching file scipy/special/wright.hh using Plan A... Hunk #1 succeeded at 2. done ===> Creating toolchain wrappers for py315-scipy-1.18.1 /usr/bin/ln -s /opt/pkg/lib/python3.15/site-packages/numpy/_core/lib/pkgconfig/numpy.pc /home/pbuild/work/math/py-scipy/work/.buildlink/lib/pkgconfig/numpy.pc ===> Configuring for py315-scipy-1.18.1 /usr/bin/ln -sf /opt/pkg/bin/pybind11-config-3.15 /home/pbuild/work/math/py-scipy/work/.buildlink/bin/pybind11-config => Fixing cython binary name. => Fixing f2py binary name. => Fixing pythran binary name. /usr/bin/ln -sf /opt/pkg/bin/f2py-3.15 /home/pbuild/work/math/py-scipy/work/.buildlink/bin/f2py => Checking for portability problems in extracted files